Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 1.7e-251 872.1 416 100.0
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 2.0e-199 699.1 416 79.1
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 1.3e-195 686.4 402 79.4
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 1.3e-185 653.3 411 73.2
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 2.2e-185 652.5 416 73.1
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 1.2e-183 646.7 459 67.1
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 4.5e-183 644.8 396 74.7
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 1.3e-182 643.3 418 72.7
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 3.8e-182 641.7 411 71.8
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 1.1e-181 640.2 386 75.4
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 6.1e-180 634.4 411 71.3
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 2.3e-179 632.5 410 69.8
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 9.7e-178 627.1 387 73.6
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 2.8e-177 625.5 406 70.9
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 8.2e-177 624.0 417 70.0
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 1.4e-176 623.2 413 70.7
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 1.4e-176 623.2 412 70.1
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 1.8e-176 622.9 404 71.5
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 9.1e-176 620.5 414 68.4
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 9.1e-176 620.5 382 74.1
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 1.2e-175 620.2 413 69.5
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 2.6e-175 619.0 401 70.1
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 7.7e-175 617.5 414 68.6
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 7.7e-175 617.5 462 64.3
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 1.3e-174 616.7 415 68.0
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 2.9e-174 615.5 415 67.7
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 5.0e-174 614.8 415 67.5
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 6.5e-174 614.4 417 68.3
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 5.5e-173 611.3 401 70.8
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 3.6e-172 608.6 406 69.2
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 3.6e-172 608.6 414 68.1
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 6.7e-171 604.4 368 76.9
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 1.1e-170 603.6 417 69.3
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.5e-170 603.2 368 76.9
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 2.0e-170 602.8 342 79.8
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 3.3e-170 602.1 371 73.3
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 5.7e-170 601.3 416 67.1
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 4.8e-169 598.2 410 67.3
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 6.3e-169 597.8 415 67.0
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 7.0e-168 594.3 415 67.2
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 9.1e-168 594.0 409 67.0
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 1.6e-167 593.2 413 67.8
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 1.6e-167 593.2 347 77.5
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 7.7e-167 590.9 380 71.8
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 7.7e-167 590.9 419 65.9
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.7e-166 589.7 409 68.2
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 5.0e-166 588.2 419 66.1
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 1.1e-165 587.0 417 66.7
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 1.5e-165 586.6 406 66.0
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 1.9e-165 586.3 417 65.7
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 7.2e-165 584.3 415 64.8
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 4.7e-164 581.6 410 64.4
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 1.0e-163 580.5 403 67.0
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 6.8e-163 577.8 412 63.3
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 8.8e-163 577.4 413 65.6
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 5.7e-162 574.7 416 63.2
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.7e-161 573.2 411 66.4
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 8.3e-161 570.9 419 64.2
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 1.8e-160 569.7 415 65.3
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 4.1e-160 568.5 409 64.3
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 7.0e-160 567.8 409 63.1
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 1.6e-159 566.6 407 64.4
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 1.0e-158 563.9 420 63.1
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 1.7e-158 563.1 411 61.8
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 1.7e-158 563.1 415 64.8
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 1.7e-158 563.1 415 63.4
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.7e-158 563.1 410 63.9
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 2.9e-158 562.4 401 64.8
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 2.9e-158 562.4 382 69.1
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 5.0e-158 561.6 382 66.2
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 8.5e-158 560.8 411 65.0
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 1.5e-157 560.1 411 62.5
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 1.9e-157 559.7 413 61.7
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 3.2e-157 558.9 407 63.4
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 4.2e-157 558.5 410 62.0
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 2.7e-156 555.8 385 67.3
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 3.6e-156 555.4 417 60.7
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 4.7e-156 555.1 404 62.9
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 6.1e-156 554.7 410 61.2
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 4.0e-155 552.0 411 61.8
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 1.5e-154 550.1 400 63.5
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 1.3e-153 547.0 412 62.1
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 1.3e-153 547.0 401 61.8
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 2.8e-153 545.8 437 59.0
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 2.7e-151 539.3 339 71.7
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 5.0e-150 535.0 416 60.6
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 2.8e-148 529.3 415 60.7
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 1.8e-147 526.6 415 62.7
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 2.3e-147 526.2 409 63.6
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 4.1e-144 515.4 373 65.4
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 2.7e-143 512.7 375 62.4
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 2.1e-140 503.1 303 72.6
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 3.6e-140 502.3 320 74.1
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 1.4e-139 500.4 348 66.7
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 5.2e-139 498.4 369 65.0
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 9.8e-138 494.2 411 56.7
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 3.6e-132 475.7 418 55.3
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 1.4e-131 473.8 442 53.8
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 1.2e-127 460.7 373 58.7
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 1.0e-126 457.6 419 53.5
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 1.3e-126 457.2 423 53.9
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.9e-125 453.4 370 57.0
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.1e-123 447.6 368 56.5
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 6.4e-121 438.3 355 60.3
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-120 437.6 412 53.9
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.2e-120 434.5 354 58.8
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.1e-119 433.3 355 60.0
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 2.3e-118 429.9 393 55.7
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 8.6e-118 427.9 307 64.8
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 6.2e-116 421.8 321 61.7
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.6e-114 416.4 410 51.2
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 9.6e-109 397.9 352 56.0
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 2.8e-108 396.4 444 47.5
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 4.8e-108 395.6 274 69.0
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.9e-106 387.9 247 69.6
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 9.9e-106 387.9 199 87.9
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 5.4e-104 382.1 200 86.0
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 7.9e-103 378.3 283 59.0
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 4.3e-101 372.5 413 46.2
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.6e-101 371.3 416 48.1
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 4.0e-99 365.9 251 68.1
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 1.9e-88 330.5 267 59.6
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.3e-88 328.2 345 51.0
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-86 324.7 271 57.9
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.3e-80 301.6 208 67.3
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-79 300.8 208 65.9
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.3e-76 291.2 404 41.6
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.2e-76 288.5 217 62.2
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 2.1e-71 273.9 167 71.3
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 7.9e-71 271.9 296 42.9
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 3.4e-66 256.5 165 71.5
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-55 221.5 150 68.0
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-55 221.5 150 68.0
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-55 221.5 150 68.0
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-54 218.0 150 67.3
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.3e-54 217.2 194 55.7
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-51 208.0 157 62.4
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 1.1e-48 198.4 249 44.6
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 5.7e-45 186.0 116 71.6
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.7e-44 183.3 189 48.1
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 5.0e-41 172.9 86 90.7
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.1e-39 167.5 96 75.0
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 2.2e-36 157.5 108 67.6
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 9.2e-35 152.1 100 63.0
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 2.7e-26 124.0 84 63.1
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.6e-23 113.6 75 69.3
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.4e-21 107.1 62 71.0
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.8e-14 84.7 43 83.7
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 1.3e-12 78.6 107 42.1
Dinv44900 Davidia involucrata HOM05D004741 ORTHO05D005454 2.2e-12 77.8 88 48.9
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 1.1e-11 75.5 48 64.6
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 2.1e-10 71.2 77 44.2
Gohir.A08G000024 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.3e-09 67.8 110 42.7
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 8.6e-09 65.9 36 77.8
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 2.5e-08 64.3 238 27.3
Gohir.A13G000601 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.4e-06 57.8 54 48.1


User provided reference genes

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