Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 6.2e-162 574.3 348 100.0
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 1.1e-131 473.8 333 82.9
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 2.0e-131 473.0 363 77.4
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 3.3e-131 472.2 337 81.3
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 4.4e-131 471.9 353 80.5
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 7.5e-131 471.1 349 82.5
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 3.7e-130 468.8 353 80.2
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 2.4e-129 466.1 348 79.0
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.6e-128 463.4 344 79.7
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 1.3e-127 460.3 239 93.7
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 1.3e-127 460.3 239 93.7
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 2.2e-127 459.5 315 88.3
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 2.2e-127 459.5 315 88.3
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 6.5e-127 458.0 332 84.3
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 8.5e-127 457.6 335 82.7
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 1.9e-126 456.4 240 94.6
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 5.5e-126 454.9 239 92.9
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 5.5e-126 454.9 333 82.0
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 7.2e-126 454.5 347 77.8
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 9.4e-126 454.1 349 80.5
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 9.4e-126 454.1 239 92.9
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.6e-125 453.4 347 77.8
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 1.6e-125 453.4 239 92.5
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 1.6e-125 453.4 334 83.5
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 1.6e-125 453.4 349 82.2
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 2.1e-125 453.0 351 81.5
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 2.1e-125 453.0 239 92.9
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 2.7e-125 452.6 339 78.2
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 6.1e-125 451.4 361 78.1
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 8.0e-125 451.1 352 81.2
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 8.0e-125 451.1 343 78.4
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 1.4e-124 450.3 239 91.2
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 1.8e-124 449.9 239 91.6
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 1.8e-124 449.9 239 91.6
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 1.8e-124 449.9 239 91.2
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 2.3e-124 449.5 239 91.2
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 3.0e-124 449.1 240 91.7
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 3.0e-124 449.1 333 83.2
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 4.0e-124 448.7 239 91.2
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 5.2e-124 448.4 333 83.5
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 6.8e-124 448.0 239 91.6
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 2.0e-123 446.4 343 78.1
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 2.6e-123 446.0 239 92.5
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 3.4e-123 445.7 240 91.2
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 3.4e-123 445.7 350 82.3
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 7.5e-123 444.5 239 90.0
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 7.5e-123 444.5 349 79.7
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 9.8e-123 444.1 239 90.8
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 9.8e-123 444.1 237 91.6
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 2.2e-122 443.0 239 91.6
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 2.8e-122 442.6 349 82.8
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 2.8e-122 442.6 350 72.3
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 3.7e-122 442.2 342 81.6
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 3.7e-122 442.2 342 75.7
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 3.7e-122 442.2 241 90.9
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 1.4e-121 440.3 235 91.9
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 1.8e-121 439.9 347 76.9
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 4.1e-121 438.7 231 92.6
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 1.2e-120 437.2 334 77.5
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.6e-120 436.8 242 90.9
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.6e-120 436.8 242 90.9
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 5.9e-120 434.9 241 90.0
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 1.0e-119 434.1 241 89.6
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 1.7e-119 433.3 348 77.9
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 3.8e-119 432.2 239 88.7
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 6.5e-119 431.4 333 81.1
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 8.5e-119 431.0 235 91.1
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 1.9e-118 429.9 341 79.2
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 3.2e-118 429.1 339 79.1
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 1.2e-117 427.2 361 75.6
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 1.2e-117 427.2 361 75.6
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 2.1e-117 426.4 348 77.6
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 3.6e-117 425.6 353 79.3
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 1.0e-116 424.1 361 75.3
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 1.4e-116 423.7 400 68.8
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 1.8e-116 423.3 228 89.9
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 1.8e-116 423.3 228 90.8
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 2.3e-116 422.9 412 64.8
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 8.8e-116 421.0 220 93.2
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 8.8e-116 421.0 348 76.7
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 3.4e-115 419.1 235 88.1
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 2.8e-114 416.0 220 90.9
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 1.8e-113 413.3 220 91.4
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 5.4e-113 411.8 228 87.7
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 2.7e-112 409.5 228 87.3
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 2.7e-112 409.5 228 87.3
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 5.9e-112 408.3 232 87.1
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 6.6e-111 404.8 224 87.5
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 8.6e-111 404.4 241 83.0
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 1.5e-110 403.7 331 73.4
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 1.9e-110 403.3 228 85.1
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 1.9e-110 403.3 228 85.1
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 2.5e-110 402.9 228 85.1
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 2.5e-110 402.9 228 85.1
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 1.2e-109 400.6 228 86.0
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.0e-108 397.5 233 85.0
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 2.3e-108 396.4 232 85.3
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 9.8e-107 391.0 241 80.9
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 2.2e-106 389.8 224 84.8
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 7.0e-105 384.8 208 91.3
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 9.2e-105 384.4 241 79.7
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 1.0e-103 380.9 224 81.7
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 1.3e-103 380.6 238 80.3
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 3.9e-103 379.0 239 79.5
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 8.0e-101 371.3 286 80.4
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 7.3e-94 348.2 241 74.3
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 2.4e-89 333.2 181 90.1
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 4.6e-88 328.9 342 54.7
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 2.3e-87 326.6 175 91.4
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 5.1e-87 325.5 228 73.7
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 9.5e-86 321.2 235 69.4
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 3.1e-84 316.2 567 39.0
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 4.0e-84 315.8 236 66.9
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 7.1e-81 305.1 237 67.5
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 1.2e-77 294.3 175 83.4
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 1.1e-76 291.2 219 65.3
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 1.1e-76 291.2 247 66.0
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 9.3e-73 278.1 189 73.5
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 9.3e-73 278.1 207 71.0
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 1.3e-71 274.2 150 88.7
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 5.4e-65 252.3 243 74.5
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 3.3e-62 243.0 132 90.2
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 4.8e-61 239.2 224 58.0
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 4.0e-60 236.1 219 79.9
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 9.3e-57 224.9 241 68.0
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 3.5e-56 223.0 195 62.1
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 3.3e-54 216.5 136 80.1
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 1.1e-52 211.5 106 97.2
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 4.0e-52 209.5 106 97.2
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 9.0e-52 208.4 108 90.7
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 1.5e-51 207.6 108 94.4
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 8.4e-50 201.8 106 90.6
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 4.6e-48 196.1 106 89.6
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 6.0e-48 195.7 106 92.5
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 1.1e-46 191.4 108 88.0
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 1.8e-44 184.1 92 95.7
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 2.9e-42 176.8 95 91.6
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 2.5e-41 173.7 91 90.1
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 2.5e-41 173.7 95 90.5
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 6.1e-40 169.1 200 59.5
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.1e-38 164.9 133 66.2
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 1.2e-32 144.8 83 81.9
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 2.1e-32 144.1 71 95.8
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 2.1e-32 144.1 71 95.8
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 5.9e-27 125.9 90 74.4
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 9.4e-25 118.6 169 69.2
MSTRG.5777 Avicennia marina HOM05D004689 ORTHO05D023802 1.7e-21 107.8 146 67.1
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 1.4e-20 104.8 58 86.2
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 3.5e-19 100.1 132 51.5
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 4.1e-12 76.6 169 68.0
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 7.7e-11 72.4 103 48.5
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 5.0e-10 69.7 38 89.5
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 8.5e-10 68.9 38 86.8
Haze_08645 Corylus avellana HOM05D004689 ORTHO05D023802 1.9e-09 67.8 37 89.2
Haze_05345 Corylus avellana HOM05D004689 ORTHO05D023802 5.5e-09 66.2 147 56.5
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 5.2e-07 59.7 45 64.4


User provided reference genes

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