Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 0.0e+00 2268.0 1132 100.0
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 0.0e+00 1545.4 1145 70.5
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 0.0e+00 1368.2 1143 64.6
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 0.0e+00 1273.8 1142 63.4
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 0.0e+00 1273.8 1142 63.4
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 0.0e+00 1124.8 1143 55.6
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 1.7e-309 1066.2 1178 52.8
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 1.4e-308 1063.1 1150 52.3
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 1.0e-306 1057.0 1168 50.8
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 3.0e-306 1055.4 1181 51.6
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 1.3e-301 1040.0 1163 51.2
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 7.9e-299 1030.8 1152 51.5
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 2.2e-296 1022.7 1167 51.2
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 7.0e-295 1017.7 1167 50.0
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 3.4e-294 1015.4 1174 51.0
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 3.2e-292 1008.8 1162 50.5
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 2.1e-291 1006.1 1180 50.5
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 1.6e-286 989.9 1224 48.0
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 1.0e-285 987.3 1124 49.8
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.2e-283 980.3 1160 49.7
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 5.7e-281 971.5 1163 49.7
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 6.3e-280 968.0 1172 49.8
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 1.7e-277 959.9 1191 48.9
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 5.0e-277 958.4 1166 48.7
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 3.2e-276 955.7 1169 48.3
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 4.2e-276 955.3 1177 48.9
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 1.0e-274 950.7 1215 47.2
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 8.8e-274 947.6 1148 48.6
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 1.4e-271 940.3 1217 47.2
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 1.9e-268 929.9 1089 50.0
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 1.2e-267 927.2 1177 47.2
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 1.6e-267 926.8 1159 46.7
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 4.7e-267 925.2 1006 52.1
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 8.0e-267 924.5 1160 46.6
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 3.0e-266 922.5 1164 46.6
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 4.0e-266 922.2 1008 52.1
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 1.8e-263 913.3 1086 48.8
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 1.8e-263 913.3 1253 44.4
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 1.2e-262 910.6 1152 46.6
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 8.6e-261 904.4 1192 45.8
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 1.1e-260 904.0 1209 44.8
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 4.7e-259 898.7 1180 45.3
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 6.8e-258 894.8 1158 46.3
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 7.5e-257 891.3 1184 45.0
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 3.2e-255 885.9 1163 45.9
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 1.7e-253 880.2 1161 46.5
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 7.3e-252 874.8 1174 44.3
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 3.6e-251 872.5 1154 44.8
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 8.0e-251 871.3 1260 43.0
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 1.1e-250 870.9 1132 45.3
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 1.5e-249 867.1 1116 47.5
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.3e-248 864.0 1258 43.9
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 4.9e-248 862.1 1196 43.6
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 8.3e-248 861.3 1113 45.5
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 3.2e-247 859.4 1176 44.2
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 5.4e-247 858.6 1161 44.2
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 1.6e-246 857.1 1287 42.6
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 1.6e-246 857.1 1012 48.2
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 3.3e-244 849.4 1179 43.7
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 5.6e-244 848.6 1278 41.5
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 3.6e-243 845.9 1129 45.2
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 4.0e-242 842.4 1028 47.9
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 5.2e-242 842.0 1138 44.4
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 1.7e-240 837.0 1273 43.3
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 6.4e-240 835.1 1322 41.3
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 1.9e-239 833.6 1222 42.0
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 1.9e-239 833.6 1163 43.5
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 2.4e-239 833.2 1174 43.4
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 2.4e-239 833.2 1129 44.7
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 3.5e-238 829.3 1115 45.1
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 2.5e-236 823.2 1136 44.2
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 2.5e-236 823.2 938 49.6
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 6.2e-235 818.5 1029 46.9
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 8.1e-235 818.1 1185 42.3
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 1.5e-233 813.9 707 63.1
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 3.4e-233 812.8 1235 40.3
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 4.9e-232 808.9 1086 46.3
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 2.3e-229 800.0 1275 42.7
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 5.6e-228 795.4 1141 42.8
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 3.6e-227 792.7 1170 42.4
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 1.7e-224 783.9 1252 40.2
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 1.6e-222 777.3 1154 41.9
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 1.6e-222 777.3 1178 43.0
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 6.0e-222 775.4 1167 42.3
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 7.8e-222 775.0 1253 41.8
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 2.3e-221 773.5 1151 43.2
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 1.3e-219 767.7 1181 42.0
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 6.2e-219 765.4 646 59.9
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 9.0e-218 761.5 1155 42.5
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 1.3e-216 757.7 1141 42.3
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 1.7e-216 757.3 1173 41.3
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 6.0e-214 748.8 1158 41.5
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 8.7e-213 745.0 1158 41.4
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 8.4e-208 728.4 1105 41.3
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 1.3e-203 714.5 1016 43.9
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 6.5e-200 702.2 1059 41.4
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 3.9e-197 693.0 682 52.1
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 1.5e-196 691.0 635 55.9
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 4.3e-196 689.5 1000 43.2
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 4.5e-193 679.5 1101 39.5
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 6.1e-190 669.1 814 49.5
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 6.7e-189 665.6 639 53.5
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 1.1e-183 648.3 1082 40.5
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 5.1e-181 639.4 1115 38.1
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 1.7e-179 634.4 846 45.4
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 1.1e-175 621.7 936 43.6
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 2.7e-174 617.1 1052 37.5
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 2.9e-160 570.5 1079 38.8
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 2.7e-158 563.9 633 49.1
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 4.0e-149 533.5 761 43.4
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 9.5e-143 512.3 688 45.8
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.1e-138 498.8 516 53.7
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 5.8e-132 476.5 426 56.6
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 1.1e-117 429.1 309 68.9
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.5e-111 407.9 774 39.5
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 4.4e-108 397.1 1097 30.9
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 2.8e-102 377.9 641 38.5
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.4e-100 370.9 801 34.8
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.2e-97 362.5 341 55.1
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 9.3e-90 336.3 958 31.5
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 1.3e-88 332.4 962 31.5
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 2.2e-83 315.1 302 54.3
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.2e-81 309.3 293 53.6
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 1.4e-72 279.3 269 51.3
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.9e-66 258.8 355 40.3
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 2.2e-62 245.4 406 35.7
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 5.4e-45 187.6 492 35.2
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 3.2e-42 178.3 622 30.1
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 8.9e-32 143.7 561 26.0
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 1.1e-26 126.7 300 30.3
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 4.0e-24 118.2 287 31.0
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 2.0e-23 115.9 271 32.5
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 2.6e-15 89.0 306 30.4
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 8.9e-08 63.9 46 65.2
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 6.4e-06 57.8 140 35.0


User provided reference genes

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