Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 4.9e-230 800.8 415 100.0
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 2.6e-215 751.9 415 92.5
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 3.9e-211 738.0 415 90.6
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 7.3e-210 733.8 415 90.4
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 4.2e-205 718.0 414 88.6
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 5.1e-203 711.1 415 88.7
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 3.7e-201 704.9 413 86.7
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 4.5e-199 698.0 413 84.5
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 7.6e-199 697.2 415 84.3
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 3.8e-198 694.9 413 85.2
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 8.4e-198 693.7 411 85.4
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 8.4e-198 693.7 413 84.5
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.1e-197 693.3 413 85.0
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 1.9e-197 692.6 409 86.1
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.9e-197 692.6 414 84.5
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 7.1e-197 690.6 414 84.8
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 9.3e-197 690.3 409 85.6
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 9.3e-197 690.3 413 85.2
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 9.3e-197 690.3 414 84.3
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 1.2e-196 689.9 429 82.3
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 2.7e-196 688.7 412 84.5
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 2.7e-196 688.7 413 85.0
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 4.6e-196 688.0 416 84.9
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 6.0e-196 687.6 413 84.3
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 1.8e-195 686.0 444 79.5
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.1e-194 683.3 413 83.5
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 1.1e-194 683.3 413 84.5
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.9e-194 682.6 413 83.5
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.9e-194 682.6 419 84.0
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 4.3e-194 681.4 413 83.5
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 5.7e-194 681.0 413 83.8
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 1.3e-193 679.9 413 82.8
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 2.8e-193 678.7 415 83.9
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 2.8e-193 678.7 415 82.2
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 1.4e-192 676.4 420 82.9
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 4.1e-192 674.9 413 82.8
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 6.9e-192 674.1 413 82.1
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 9.0e-192 673.7 413 82.6
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 9.0e-192 673.7 413 82.6
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 5.9e-191 671.0 413 81.8
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 7.6e-191 670.6 413 82.3
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 7.6e-191 670.6 413 81.8
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 1.7e-190 669.5 411 82.5
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 2.2e-190 669.1 411 82.0
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 8.4e-190 667.2 411 82.7
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 8.4e-190 667.2 413 81.6
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 1.4e-189 666.4 415 82.2
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 7.2e-189 664.1 413 81.4
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 9.3e-189 663.7 413 79.9
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 9.3e-189 663.7 413 80.9
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 2.7e-188 662.1 415 80.5
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 3.5e-188 661.8 413 80.9
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.5e-188 661.8 413 80.4
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 4.6e-188 661.4 413 81.1
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 4.6e-188 661.4 413 80.1
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 4.6e-188 661.4 413 80.9
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 1.8e-187 659.4 413 80.9
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 2.3e-187 659.1 413 80.4
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 3.0e-187 658.7 413 80.4
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 3.0e-187 658.7 413 80.4
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.1e-187 657.9 413 80.1
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.1e-187 657.9 413 79.9
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 5.1e-187 657.9 411 81.0
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 8.7e-187 657.1 413 80.4
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 8.7e-187 657.1 413 80.4
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.1e-186 656.8 413 79.9
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 3.3e-186 655.2 413 80.1
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 3.3e-186 655.2 413 79.4
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 7.4e-186 654.1 413 79.7
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.3e-185 653.3 409 80.9
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 1.6e-185 652.9 413 80.4
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 3.7e-185 651.7 413 79.9
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 1.8e-184 649.4 412 80.1
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 9.0e-184 647.1 413 78.9
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 3.4e-183 645.2 425 78.1
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 3.4e-183 645.2 425 78.1
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 5.9e-183 644.4 425 77.9
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 6.5e-182 641.0 413 78.0
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 1.9e-181 639.4 414 78.3
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 4.6e-180 634.8 413 78.5
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 1.4e-179 633.3 409 79.5
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.3e-177 626.7 410 78.5
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 2.8e-177 625.5 413 77.7
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 4.8e-177 624.8 437 74.4
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.2e-175 620.2 414 75.1
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 7.7e-175 617.5 414 74.2
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 1.3e-174 616.7 414 74.4
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 1.9e-173 612.8 415 72.0
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 4.2e-173 611.7 370 83.8
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.2e-172 610.1 374 82.6
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 1.5e-170 603.2 415 74.9
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 6.5e-166 587.8 405 75.1
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 2.7e-164 582.4 412 70.6
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 2.6e-162 575.9 410 73.2
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 4.1e-160 568.5 411 73.0
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 1.6e-159 566.6 370 79.5
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 4.5e-159 565.1 413 71.9
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 2.5e-157 559.3 323 87.6
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 9.8e-154 547.4 417 68.8
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 6.3e-153 544.7 403 67.0
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 1.3e-150 537.0 484 62.8
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 2.3e-147 526.2 398 65.8
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.7e-145 520.0 410 68.5
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 3.1e-144 515.8 412 62.9
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 6.1e-140 501.5 405 60.5
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 1.1e-133 480.7 303 78.9
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 7.3e-133 478.0 281 85.4
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.2e-132 477.2 281 85.4
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 8.0e-132 474.6 295 80.7
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.2e-129 466.5 257 91.1
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 1.6e-116 423.7 314 69.4
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 1.8e-115 420.2 256 80.9
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 2.9e-113 412.9 284 72.2
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 1.2e-108 397.5 313 67.7
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 9.0e-99 364.8 284 66.9
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 3.4e-98 362.8 402 48.5
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 2.9e-97 359.8 292 68.5
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 1.2e-87 327.8 200 85.5
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 4.8e-84 315.8 191 83.2
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.5e-77 293.5 238 63.9
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 1.6e-76 290.8 186 77.4
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.1e-75 286.6 173 82.7
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-69 267.7 199 67.3
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 3.6e-63 246.5 398 35.7
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.9e-63 245.4 204 65.2
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.2e-58 231.5 139 83.5
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 2.1e-55 220.7 400 32.8
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 1.8e-54 217.6 219 55.3
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 1.7e-52 211.1 318 36.5
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 8.5e-49 198.7 121 78.5
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.2e-48 196.8 198 59.6
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.2e-48 196.8 126 77.0
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 9.7e-45 185.3 160 64.4
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.0e-43 179.1 176 59.1
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 1.3e-41 174.9 102 82.4
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 6.8e-38 162.5 113 69.9
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 2.2e-36 157.5 413 31.0
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.3e-33 148.3 83 85.5
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.5e-32 144.8 107 64.5
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 8.0e-31 139.0 80 82.5
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.6e-26 124.8 115 61.7
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 2.7e-18 97.4 99 57.6
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 3.5e-18 97.1 153 42.5
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.6e-18 96.7 51 90.2
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 8.0e-15 85.9 127 47.2
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 1.8e-14 84.7 143 42.0
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 3.4e-13 80.5 59 76.3
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 1.7e-12 78.2 146 40.4
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.4e-12 76.3 50 74.0
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.8e-10 69.3 71 56.3
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 3.0e-09 67.4 55 65.5
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 1.5e-08 65.1 40 80.0
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 2.5e-08 64.3 101 41.6
Solyc12g070150.1 Solanum lycopersicum HOM05D004528 ORTHO05D005815 8.9e-06 55.8 43 62.8


User provided reference genes

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