Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 1.2e-63 246.1 111 100.0
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 3.6e-55 218.0 112 87.5
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 4.1e-51 204.5 111 82.0
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 2.4e-43 178.7 111 68.5
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.0e-41 173.3 113 69.0
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.0e-41 173.3 113 69.0
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.0e-41 173.3 113 69.0
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.0e-41 173.3 113 69.0
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 1.1e-40 169.9 111 66.7
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 2.5e-40 168.7 113 69.0
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 5.6e-40 167.5 111 64.9
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 7.3e-40 167.2 111 66.7
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 7.3e-40 167.2 111 64.9
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 1.3e-39 166.4 111 65.8
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 1.3e-39 166.4 113 66.4
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 2.1e-39 165.6 111 64.0
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 2.1e-39 165.6 111 64.0
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 2.1e-39 165.6 113 69.0
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 2.8e-39 165.2 111 65.8
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 3.6e-39 164.9 111 66.7
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 3.6e-39 164.9 111 64.0
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 6.2e-39 164.1 111 66.7
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 2.4e-38 162.2 113 63.7
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 5.3e-38 161.0 113 67.3
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 9.0e-38 160.2 111 62.2
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 1.5e-37 159.5 113 67.3
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 5.8e-37 157.5 113 65.5
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 1.3e-36 156.4 113 61.1
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 2.9e-36 155.2 113 62.8
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 2.9e-36 155.2 113 62.8
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 3.8e-36 154.8 113 61.1
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 1.9e-35 152.5 111 62.2
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 3.2e-35 151.8 113 62.8
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 5.4e-35 151.0 113 58.4
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 5.4e-35 151.0 113 61.9
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 7.1e-35 150.6 111 61.3
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 2.1e-34 149.1 113 60.2
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 3.5e-34 148.3 113 64.6
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 7.9e-34 147.1 113 57.5
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 1.3e-33 146.4 113 58.4
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 1.3e-33 146.4 102 63.7
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 1.8e-33 146.0 113 58.4
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 3.0e-33 145.2 113 57.5
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 6.7e-33 144.1 105 60.0
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 1.1e-32 143.3 113 58.4
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 1.1e-32 143.3 113 58.4
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 1.9e-32 142.5 113 57.5
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 1.9e-32 142.5 113 57.5
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 2.5e-32 142.1 113 58.4
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 2.5e-32 142.1 100 62.0
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 1.6e-31 139.4 113 55.8
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 1.6e-31 139.4 113 55.8
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 2.1e-31 139.0 113 57.5
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 4.8e-31 137.9 113 57.5
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 4.8e-31 137.9 113 56.6
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 1.8e-30 136.0 113 55.8
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 1.8e-30 136.0 113 54.0
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 4.0e-30 134.8 113 54.9
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 4.0e-30 134.8 113 55.8
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 4.0e-30 134.8 113 54.0
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 5.3e-30 134.4 111 60.4
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 1.2e-29 133.3 111 56.8
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 2.0e-29 132.5 113 54.0
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 5.8e-29 131.0 111 59.5
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 7.6e-29 130.6 113 56.6
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 9.9e-29 130.2 96 63.5
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 1.7e-28 129.4 114 54.4
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 4.9e-28 127.9 111 53.2
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 4.9e-28 127.9 118 50.0
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 6.4e-28 127.5 113 55.8
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 1.1e-27 126.7 111 53.2
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 1.4e-27 126.3 111 55.0
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 2.4e-27 125.6 115 51.3
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 9.3e-27 123.6 111 53.2
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 9.3e-27 123.6 111 53.2
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 9.3e-27 123.6 111 53.2
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 1.6e-26 122.9 111 55.9
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 4.6e-26 121.3 137 48.2
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 4.6e-26 121.3 111 55.0
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 6.0e-26 120.9 111 53.2
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 1.0e-25 120.2 111 54.1
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.0e-25 120.2 111 54.1
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.0e-25 120.2 111 54.1
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.0e-25 120.2 111 54.1
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.0e-25 120.2 111 54.1
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.0e-25 120.2 111 54.1
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.0e-25 120.2 111 54.1
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 1.3e-25 119.8 94 55.3
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 3.9e-25 118.2 113 53.1
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 8.7e-25 117.1 113 51.3
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 2.5e-24 115.5 111 51.4
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 4.3e-24 114.8 86 58.1
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 7.4e-24 114.0 111 50.5
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 9.6e-24 113.6 113 51.3
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 1.3e-23 113.2 111 49.5
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 1.3e-23 113.2 111 49.5
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 1.3e-23 113.2 111 49.5
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 1.3e-23 113.2 111 49.5
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 1.3e-23 113.2 111 49.5
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 1.3e-23 113.2 111 49.5
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 1.3e-23 113.2 111 49.5
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 1.3e-23 113.2 111 49.5
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 1.3e-23 113.2 114 51.8
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 1.6e-23 112.8 111 49.5
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 3.7e-23 111.7 111 50.5
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 4.8e-23 111.3 111 50.5
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 6.2e-23 110.9 111 48.6
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 6.2e-23 110.9 69 65.2
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.1e-22 110.2 111 49.5
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 1.1e-22 110.2 111 48.6
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 1.8e-22 109.4 111 46.8
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 6.9e-22 107.5 111 48.6
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 9.0e-22 107.1 110 46.4
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 2.6e-21 105.5 114 47.4
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 1.4e-19 99.8 71 54.9
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 3.2e-19 98.6 112 42.9
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 5.5e-19 97.8 71 64.8
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 1.6e-18 96.3 114 45.6
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 7.9e-18 94.0 55 72.7
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 7.9e-18 94.0 114 46.5
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 3.9e-17 91.7 113 43.4
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 2.5e-16 89.0 67 64.2
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 2.2e-15 85.9 92 50.0
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 4.8e-15 84.7 76 56.6
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 4.8e-15 84.7 63 65.1
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 1.2e-13 80.1 80 51.2
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 2.0e-13 79.3 80 52.5
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 1.1e-11 73.6 114 40.4
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 1.9e-11 72.8 113 37.2
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 1.2e-10 70.1 113 35.4
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 3.6e-10 68.6 113 35.4
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 7.9e-10 67.4 110 37.3
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 7.9e-10 67.4 113 32.7
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 7.9e-10 67.4 113 35.4
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 2.3e-09 65.9 74 45.9
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 3.9e-09 65.1 92 39.1
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 5.1e-09 64.7 122 36.9
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 1.1e-08 63.5 116 33.6
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 5.7e-08 61.2 122 36.9
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 9.7e-08 60.5 110 34.5
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 9.7e-08 60.5 122 36.9
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 9.7e-08 60.5 122 30.3
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 1.7e-07 59.7 113 33.6
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 2.8e-07 58.9 119 29.4
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 3.7e-07 58.5 122 28.7
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 4.8e-07 58.2 118 31.4
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 6.3e-07 57.8 120 32.5
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 8.2e-07 57.4 119 31.1
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 8.2e-07 57.4 119 31.1
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 1.1e-06 57.0 121 32.2
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.1e-06 57.0 120 32.5
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 1.1e-06 57.0 113 32.7
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 1.4e-06 56.6 122 35.2
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 1.4e-06 56.6 119 28.6
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 1.4e-06 56.6 119 30.3
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 1.4e-06 56.6 119 30.3
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 1.8e-06 56.2 120 32.5
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 1.8e-06 56.2 110 35.5
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 2.4e-06 55.8 124 34.7
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 2.4e-06 55.8 110 35.5
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 2.4e-06 55.8 123 35.0
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 2.4e-06 55.8 120 34.2
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.4e-06 55.8 122 28.7
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 3.1e-06 55.5 116 31.9
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 3.1e-06 55.5 110 33.6
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 3.1e-06 55.5 113 31.0
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 3.1e-06 55.5 122 32.0
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 4.1e-06 55.1 124 33.1
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 4.1e-06 55.1 111 33.3
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 5.3e-06 54.7 119 29.4
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 5.3e-06 54.7 116 32.8
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 5.3e-06 54.7 113 31.0
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 5.3e-06 54.7 54 46.3
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 5.3e-06 54.7 117 27.4
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 6.9e-06 54.3 115 30.4
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 6.9e-06 54.3 113 26.5
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 6.9e-06 54.3 115 30.4
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 6.9e-06 54.3 113 31.0
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 6.9e-06 54.3 119 30.3
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 6.9e-06 54.3 119 30.3
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 9.1e-06 53.9 121 30.6
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 9.1e-06 53.9 124 32.3
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 9.1e-06 53.9 112 29.5


User provided reference genes

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