Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 4.0e-176 621.3 314 100.0
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 2.6e-127 459.1 311 75.6
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 4.5e-127 458.4 304 76.0
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 1.1e-125 453.8 308 76.3
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 2.7e-124 449.1 309 76.1
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 1.0e-123 447.2 308 74.4
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 1.4e-123 446.8 317 73.5
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.4e-123 446.8 309 73.1
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.8e-123 446.4 309 73.1
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 8.8e-123 444.1 309 71.8
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.1e-122 443.7 309 73.1
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 1.1e-122 443.7 309 74.4
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 1.5e-122 443.4 309 72.8
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 2.0e-119 433.0 327 69.7
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 2.2e-118 429.5 309 72.2
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 2.9e-118 429.1 316 70.3
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 5.0e-118 428.3 314 71.0
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 5.0e-118 428.3 309 72.2
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 6.5e-118 427.9 316 69.6
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 1.1e-117 427.2 316 69.0
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 1.5e-117 426.8 315 70.8
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 1.9e-117 426.4 308 70.5
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 1.9e-117 426.4 309 72.2
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 7.2e-117 424.5 316 69.0
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 1.6e-116 423.3 308 71.4
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 1.6e-116 423.3 316 68.7
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 1.6e-116 423.3 315 67.3
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 2.1e-116 422.9 311 71.4
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 2.1e-116 422.9 308 68.2
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 3.6e-116 422.2 313 70.3
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 4.7e-116 421.8 310 71.9
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 6.1e-116 421.4 309 68.3
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 8.0e-116 421.0 317 69.1
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 8.0e-116 421.0 317 69.1
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.0e-115 420.6 309 71.8
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.0e-115 420.6 310 70.6
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.0e-115 420.6 309 71.8
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.0e-115 420.6 310 70.6
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.8e-115 419.9 310 71.3
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 2.3e-115 419.5 323 67.8
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 4.0e-115 418.7 311 70.4
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 5.2e-115 418.3 307 71.3
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 2.0e-114 416.4 317 68.1
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 2.0e-114 416.4 310 70.3
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.0e-114 416.4 312 69.2
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 5.7e-114 414.8 308 69.5
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 9.8e-114 414.1 323 68.4
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 9.8e-114 414.1 307 69.7
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 1.3e-113 413.7 315 68.9
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.7e-113 413.3 310 68.4
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 2.2e-113 412.9 309 69.6
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 1.1e-112 410.6 307 69.7
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 1.4e-112 410.2 308 69.8
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 1.4e-112 410.2 310 69.7
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 1.4e-112 410.2 311 67.5
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 3.1e-112 409.1 307 68.1
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 3.1e-112 409.1 308 68.5
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 5.4e-112 408.3 308 69.5
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 1.6e-111 406.8 311 67.8
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 1.6e-111 406.8 313 68.4
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.6e-111 406.8 312 70.5
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 2.0e-111 406.4 311 67.8
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 2.0e-111 406.4 337 65.9
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 2.7e-111 406.0 309 68.6
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 1.7e-110 403.3 313 66.1
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 2.9e-110 402.5 309 67.6
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 2.9e-110 402.5 309 67.6
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 3.8e-110 402.1 316 66.8
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 3.8e-110 402.1 309 68.3
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 5.0e-110 401.7 351 61.5
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 5.0e-110 401.7 312 67.3
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 5.0e-110 401.7 307 68.7
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 5.0e-110 401.7 316 66.5
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 6.5e-110 401.4 348 62.9
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 6.5e-110 401.4 315 67.9
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 8.5e-110 401.0 307 68.7
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 8.5e-110 401.0 307 68.7
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 8.5e-110 401.0 307 68.7
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 1.1e-109 400.6 309 68.0
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 1.1e-109 400.6 309 68.0
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.1e-109 400.6 315 67.0
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 1.1e-109 400.6 312 65.1
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 1.9e-109 399.8 307 69.1
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 2.5e-109 399.4 310 65.5
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 4.2e-109 398.7 312 64.7
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 1.6e-108 396.7 307 67.4
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 2.1e-108 396.4 307 68.7
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 2.7e-108 396.0 310 64.5
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 2.7e-108 396.0 316 66.5
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 3.6e-108 395.6 311 66.9
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 8.0e-108 394.4 313 65.2
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 3.0e-107 392.5 310 68.4
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 5.2e-107 391.7 315 63.5
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 4.9e-105 385.2 268 75.0
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 7.7e-103 377.9 315 63.8
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 8.6e-102 374.4 221 84.2
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 1.1e-101 374.0 310 65.5
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 2.8e-100 369.4 271 69.7
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 2.8e-100 369.4 347 57.3
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 3.6e-100 369.0 339 58.7
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 3.0e-99 365.9 348 57.2
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 4.4e-98 362.1 260 71.2
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 2.2e-97 359.8 291 65.3
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 1.4e-96 357.1 283 65.7
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 1.7e-94 350.1 266 70.3
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 2.3e-91 339.7 322 55.9
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 8.9e-91 337.8 203 80.8
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 2.6e-90 336.3 317 56.2
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 7.5e-90 334.7 315 60.6
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 2.9e-89 332.8 211 79.1
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.4e-88 329.7 259 65.3
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.2e-87 327.4 272 63.2
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 1.4e-83 313.9 314 55.4
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 5.8e-82 308.5 257 64.2
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 5.8e-82 308.5 309 56.0
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 2.9e-81 306.2 309 55.3
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 1.1e-77 294.3 185 77.8
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 2.5e-69 266.5 198 71.7
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 1.2e-66 257.7 374 43.3
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 2.4e-64 250.0 298 51.0
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 4.6e-63 245.7 264 54.5
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 3.3e-61 239.6 250 57.2
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 4.0e-59 232.6 191 69.1
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 1.1e-48 198.0 189 59.3
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.0e-46 191.4 310 43.9
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 3.9e-46 189.5 227 46.3
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 5.1e-46 189.1 117 82.1
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 3.1e-43 179.9 220 45.0
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 4.0e-43 179.5 192 52.1
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 7.9e-39 165.2 155 58.1
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 7.4e-37 158.7 203 46.3
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 4.8e-36 156.0 95 82.1
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 9.0e-35 151.8 126 63.5
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 9.0e-35 151.8 126 63.5
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 1.5e-34 151.0 96 81.2
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.0e-33 148.3 122 64.8
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 5.5e-32 142.5 250 42.8
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 7.9e-31 138.7 93 77.4
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 2.3e-30 137.1 194 42.3
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.6e-26 123.6 80 75.0
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 3.4e-26 123.2 230 38.7
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 1.0e-22 111.7 137 46.7
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.1e-21 108.2 99 60.6
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.6e-15 87.8 62 72.6
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.8e-14 84.3 99 50.5
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 3.8e-09 66.6 128 35.9
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 1.1e-08 65.1 39 69.2
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 1.1e-08 65.1 43 69.8
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 3.6e-07 60.1 40 60.0
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 6.7e-06 55.8 62 51.6
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 6.7e-06 55.8 57 59.6


User provided reference genes

Program Settings