Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 6.8e-190 667.2 333 100.0
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 3.0e-153 545.4 288 92.7
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 1.2e-151 540.0 291 90.4
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 1.2e-151 540.0 299 89.3
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 2.6e-149 532.3 289 88.6
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 2.6e-149 532.3 288 88.9
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 7.6e-149 530.8 307 83.4
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.3e-148 530.0 288 88.9
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 2.2e-148 529.3 289 88.6
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 2.9e-148 528.9 288 87.5
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 3.8e-148 528.5 289 87.5
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 3.2e-147 525.4 288 87.2
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 3.2e-147 525.4 289 87.5
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 9.3e-147 523.9 289 86.9
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 9.3e-147 523.9 289 87.2
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 1.6e-146 523.1 288 86.8
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 2.1e-146 522.7 288 87.5
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 2.1e-146 522.7 278 91.4
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 3.5e-146 521.9 288 86.8
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 4.6e-146 521.5 288 86.8
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 4.6e-146 521.5 288 86.5
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 6.0e-146 521.2 288 86.8
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 6.0e-146 521.2 288 86.8
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 7.8e-146 520.8 288 85.4
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 7.8e-146 520.8 289 87.2
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 1.3e-145 520.0 291 85.6
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.3e-145 520.0 288 86.5
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 3.0e-145 518.8 288 85.1
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 3.0e-145 518.8 287 86.8
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 5.1e-145 518.1 289 86.5
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 5.1e-145 518.1 287 86.8
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 5.1e-145 518.1 288 85.8
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 5.1e-145 518.1 287 86.8
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 6.6e-145 517.7 288 86.1
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 6.6e-145 517.7 288 86.1
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 6.6e-145 517.7 288 85.4
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 8.7e-145 517.3 288 85.8
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 1.9e-144 516.2 288 85.4
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 2.5e-144 515.8 288 85.1
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 3.3e-144 515.4 285 87.0
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 3.3e-144 515.4 287 85.4
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 4.3e-144 515.0 288 85.4
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 4.3e-144 515.0 288 85.4
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 4.3e-144 515.0 285 87.4
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 4.3e-144 515.0 288 84.7
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 5.6e-144 514.6 286 85.7
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 5.6e-144 514.6 288 84.7
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 9.6e-144 513.8 288 83.7
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 9.6e-144 513.8 288 83.7
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 9.6e-144 513.8 285 87.0
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 9.6e-144 513.8 288 84.7
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 1.6e-143 513.1 286 85.0
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 2.1e-143 512.7 288 85.1
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 2.1e-143 512.7 285 87.0
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 2.1e-143 512.7 288 84.4
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 2.8e-143 512.3 285 85.3
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 2.8e-143 512.3 316 80.1
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 3.6e-143 511.9 288 84.7
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 6.2e-143 511.1 289 83.4
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 6.2e-143 511.1 288 84.7
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 6.2e-143 511.1 288 84.4
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 8.1e-143 510.8 286 86.0
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 1.1e-142 510.4 288 84.4
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 1.4e-142 510.0 289 83.4
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 1.4e-142 510.0 289 84.4
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 1.4e-142 510.0 286 86.0
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 1.8e-142 509.6 288 83.7
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 1.8e-142 509.6 288 84.0
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 2.4e-142 509.2 288 84.4
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 2.4e-142 509.2 288 84.0
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 2.4e-142 509.2 288 85.4
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 3.1e-142 508.8 288 84.4
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 4.0e-142 508.4 288 83.7
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 5.3e-142 508.1 288 84.7
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 9.0e-142 507.3 286 83.9
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 1.2e-141 506.9 295 81.7
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 2.0e-141 506.1 288 84.0
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 2.0e-141 506.1 288 84.0
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 2.6e-141 505.8 309 79.9
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 4.5e-141 505.0 288 84.4
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 5.8e-141 504.6 288 83.3
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 5.8e-141 504.6 288 83.3
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 7.6e-141 504.2 278 88.1
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 9.9e-141 503.8 288 83.7
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 1.1e-139 500.4 287 83.3
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 1.1e-139 500.4 288 83.3
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 3.2e-139 498.8 289 83.4
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 5.4e-139 498.0 287 82.6
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 7.1e-139 497.7 289 83.0
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 7.1e-139 497.7 286 84.6
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 1.2e-138 496.9 292 82.5
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 7.9e-138 494.2 298 82.9
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 7.9e-138 494.2 298 82.9
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 1.0e-137 493.8 287 83.6
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 1.0e-137 493.8 288 82.3
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 1.3e-137 493.4 288 83.7
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 5.1e-137 491.5 272 85.7
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 5.1e-137 491.5 360 70.3
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 6.7e-137 491.1 293 82.3
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 6.7e-137 491.1 288 83.0
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 1.5e-136 490.0 288 82.6
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 1.9e-136 489.6 288 82.3
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 2.5e-136 489.2 272 86.0
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 2.5e-136 489.2 282 84.0
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 2.1e-135 486.1 272 85.7
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 2.8e-135 485.7 273 83.5
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 6.2e-135 484.6 270 85.6
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 2.4e-134 482.6 272 84.2
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 3.1e-134 482.3 272 85.3
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 4.0e-134 481.9 279 84.9
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 6.9e-134 481.1 288 80.2
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 1.2e-133 480.3 272 84.6
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.5e-133 479.9 259 89.2
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 4.5e-133 478.4 286 80.8
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 1.3e-132 476.9 309 77.7
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 4.9e-132 474.9 298 78.5
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 8.4e-132 474.2 290 81.0
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 2.3e-129 466.1 255 88.6
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 3.9e-129 465.3 274 83.6
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 6.7e-129 464.5 324 73.5
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 1.1e-128 463.8 272 83.8
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 1.1e-128 463.8 272 83.5
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 7.4e-128 461.1 284 79.2
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 7.4e-128 461.1 288 78.8
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 1.1e-126 457.2 288 78.1
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 2.4e-126 456.1 253 86.6
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 6.9e-126 454.5 253 86.2
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 6.9e-126 454.5 268 81.3
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 7.6e-125 451.1 280 76.4
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 1.1e-123 447.2 246 87.0
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 1.9e-123 446.4 311 73.6
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 5.5e-123 444.9 281 74.7
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 3.3e-120 435.6 238 87.0
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 7.4e-120 434.5 242 87.2
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 2.8e-119 432.6 254 81.1
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 7.9e-114 414.5 288 72.6
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 9.7e-112 407.5 391 58.1
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 1.3e-111 407.1 287 69.3
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 1.2e-106 390.6 217 85.3
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 2.7e-106 389.4 275 71.3
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 6.7e-97 358.2 198 85.9
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 2.4e-94 349.7 191 84.3
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 1.0e-92 344.4 275 64.0
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 3.0e-89 332.8 173 91.3
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 2.0e-85 320.1 271 61.6
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 7.7e-85 318.2 288 60.4
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 1.9e-83 313.5 287 57.5
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 6.1e-74 282.0 244 61.9
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-73 279.6 169 76.3
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 2.0e-69 266.9 261 50.6
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 6.8e-65 251.9 194 65.5
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 4.4e-48 196.1 193 55.4
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 9.9e-48 194.9 133 69.9
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 9.9e-48 194.9 133 69.9
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 3.3e-35 153.3 171 49.7
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 9.9e-32 141.7 129 62.0
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 2.9e-23 113.6 91 62.6
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.4e-22 111.3 100 58.0
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 3.2e-22 110.2 72 66.7
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 5.4e-22 109.4 64 82.8
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 1.8e-20 104.4 88 61.4
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.8e-20 104.4 88 61.4
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 3.4e-16 90.1 48 83.3
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 5.5e-14 82.8 46 82.6
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 3.9e-12 76.6 45 75.6
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 6.2e-10 69.3 90 45.6
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 6.2e-10 69.3 90 45.6
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.2e-08 65.1 40 80.0
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 5.8e-08 62.8 45 64.4
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 2.2e-07 60.8 49 67.3


User provided reference genes

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