Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 4.0e-306 1053.9 513 100.0
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 3.3e-228 795.0 472 81.1
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 1.1e-223 780.0 523 74.4
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 2.1e-222 775.8 463 78.4
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 1.6e-214 749.6 501 72.3
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 2.1e-214 749.2 509 71.1
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 3.3e-212 741.9 477 72.1
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 2.8e-211 738.8 474 73.4
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 8.2e-211 737.3 490 73.1
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 1.4e-210 736.5 471 73.2
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 4.1e-210 734.9 471 72.6
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 5.3e-210 734.6 516 68.8
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 2.0e-209 732.6 511 68.5
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 2.0e-209 732.6 482 71.0
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 5.9e-209 731.1 464 74.4
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 2.2e-208 729.2 462 73.2
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 2.9e-208 728.8 464 74.1
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 6.5e-208 727.6 494 69.8
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 2.1e-206 722.6 482 71.2
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 2.7e-206 722.2 458 74.0
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 4.7e-206 721.5 503 68.2
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 6.1e-206 721.1 501 69.5
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 3.9e-205 718.4 469 71.2
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 5.2e-205 718.0 476 72.5
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 8.8e-205 717.2 463 72.6
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 8.8e-205 717.2 512 68.6
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 1.1e-204 716.8 478 71.1
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 1.5e-204 716.5 437 76.4
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 1.5e-204 716.5 472 75.2
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 1.3e-203 713.4 465 71.4
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 2.2e-203 712.6 503 66.6
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 3.7e-203 711.8 503 66.8
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 6.3e-203 711.1 490 69.6
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 1.4e-202 709.9 471 70.5
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 7.0e-202 707.6 469 70.8
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 1.6e-201 706.4 461 71.8
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 7.7e-201 704.1 459 72.5
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 1.0e-200 703.7 502 68.3
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 1.7e-200 703.0 458 72.5
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 1.7e-200 703.0 463 72.1
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 2.2e-200 702.6 465 71.2
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 2.9e-200 702.2 491 70.3
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 3.8e-200 701.8 535 65.6
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 1.1e-199 700.3 448 73.2
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 1.1e-199 700.3 448 73.2
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 1.9e-199 699.5 476 68.9
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 2.5e-199 699.1 499 66.9
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 5.5e-199 698.0 502 67.3
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 3.6e-198 695.3 507 65.5
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 1.4e-197 693.3 524 65.3
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 3.0e-197 692.2 465 71.2
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 2.0e-196 689.5 452 70.8
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 7.5e-196 687.6 464 70.7
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 9.8e-196 687.2 464 70.5
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 9.8e-196 687.2 459 69.3
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 3.7e-195 685.3 498 68.3
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 1.1e-194 683.7 478 68.4
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 1.4e-194 683.3 492 67.3
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 3.1e-194 682.2 498 66.5
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 3.1e-194 682.2 482 68.9
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 1.2e-193 680.2 489 67.1
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.2e-193 680.2 471 69.0
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 2.7e-193 679.1 486 66.7
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 2.7e-193 679.1 470 68.1
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 3.5e-193 678.7 492 66.7
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 5.9e-193 677.9 489 67.1
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 1.3e-192 676.8 488 67.6
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 1.1e-191 673.7 495 66.9
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 1.1e-191 673.7 491 67.2
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 1.1e-191 673.7 465 69.0
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 5.5e-191 671.4 462 69.3
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.7e-187 659.8 520 63.1
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 8.3e-187 657.5 494 65.0
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 1.4e-186 656.8 493 64.3
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 4.1e-186 655.2 506 64.0
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 7.7e-185 651.0 450 70.4
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 1.0e-184 650.6 464 67.2
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 9.8e-180 634.0 462 65.8
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 8.3e-179 630.9 486 64.2
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 3.2e-178 629.0 490 63.3
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 1.2e-172 610.5 413 69.2
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 2.6e-172 609.4 405 70.6
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 8.3e-171 604.4 462 60.8
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 3.5e-169 599.0 504 58.7
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 4.6e-169 598.6 490 61.6
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 4.6e-169 598.6 484 60.5
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 3.5e-161 572.4 499 57.5
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 3.8e-147 525.8 478 52.5
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 5.4e-146 521.9 465 58.3
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 7.8e-145 518.1 476 52.7
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 3.1e-141 506.1 337 72.4
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 2.4e-138 496.5 314 75.2
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 7.1e-138 495.0 443 51.7
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.6e-137 493.8 361 68.1
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 2.0e-132 476.9 320 71.9
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 9.0e-125 451.4 405 57.0
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 2.5e-122 443.4 342 64.6
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 2.6e-116 423.3 389 51.4
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 2.1e-113 413.7 269 75.1
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 1.9e-106 390.6 300 60.3
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 7.2e-106 388.7 383 50.9
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 4.7e-97 359.4 407 49.1
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 1.1e-95 354.8 297 60.9
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 3.7e-94 349.7 242 65.3
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 1.7e-83 314.3 282 57.1
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 1.1e-82 311.6 478 40.0
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 7.2e-82 308.9 228 64.0
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 7.2e-74 282.3 225 64.0
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 1.7e-70 271.2 515 34.8
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 9.2e-53 212.2 123 71.5
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 9.5e-42 175.6 125 64.0
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 6.4e-38 162.9 463 30.0
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 5.1e-27 126.7 92 68.5
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 5.6e-26 123.2 388 27.6
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 2.6e-23 114.4 378 26.7
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 1.8e-19 101.7 92 56.5
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 2.3e-19 101.3 171 32.7
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 4.3e-18 97.1 73 54.8
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 9.6e-18 95.9 101 50.5
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.6e-17 95.1 65 67.7
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 1.7e-14 85.1 75 57.3
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 4.9e-14 83.6 75 53.3
GSVIVG01006789001 Vitis vinifera HOM05D005888 ORTHO05D007791 3.9e-11 73.9 78 53.8
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 8.7e-11 72.8 40 72.5
MCO09G155 Micromonas commoda HOM05D005216 ORTHO05D006453 3.7e-09 67.4 408 26.0
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.8e-08 65.1 101 38.6
Sabra01G0143000 Salix brachista HOM05D005216 ORTHO05D006453 9.0e-08 62.8 310 23.5
CANSAT56G3252 Cannabis sativa HOM05D005216 ORTHO05D006453 2.0e-07 61.6 341 24.6
Os01g0193600 Oryza sativa ssp. japonica HOM05D005216 ORTHO05D006453 2.0e-07 61.6 267 27.0
C05p42210 Brassica napus HOM05D005216 ORTHO05D006453 3.4e-07 60.8 309 23.9
A05p27300 Brassica napus HOM05D005216 ORTHO05D006453 4.5e-07 60.5 309 23.9
FAN18G4156 Fragaria x ananassa HOM05D005888 ORTHO05D045398 4.5e-07 60.5 37 67.6
Solyc03g121260.3 Solanum lycopersicum HOM05D005216 ORTHO05D006453 4.5e-07 60.5 308 22.4
Sopen03g040070 Solanum pennellii HOM05D005216 ORTHO05D006453 4.5e-07 60.5 308 22.4
BraA05t21622Z Brassica rapa HOM05D005216 ORTHO05D006453 7.6e-07 59.7 309 23.6
arahy.Tifrunner.gnm1.ann1.3FLP3Q Arachis hypogaea HOM05D005888 ORTHO05D007791 1.0e-06 59.3 36 69.4
BolC5t32949H Brassica oleracea HOM05D005216 ORTHO05D006453 1.0e-06 59.3 309 23.9
Sp3g19360 Schrenkiella parvula HOM05D005216 ORTHO05D006453 4.9e-06 57.0 309 23.6
PGSC0003DMG400002513 Solanum tuberosum HOM05D005216 ORTHO05D006453 4.9e-06 57.0 269 23.4
Carub.0003s2133 Capsella rubella HOM05D005216 ORTHO05D006453 6.5e-06 56.6 268 24.6
Thecc.06G105100 Theobroma cacao HOM05D005216 ORTHO05D006453 6.5e-06 56.6 187 29.4


User provided reference genes

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