Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 1.6e-208 729.2 378 100.0
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 1.4e-178 629.8 375 87.2
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 5.5e-172 607.8 378 83.6
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 8.0e-171 604.0 375 83.2
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 1.1e-167 593.6 396 79.8
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 2.5e-164 582.4 374 81.3
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 7.3e-164 580.9 358 82.7
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 9.5e-164 580.5 357 83.2
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 5.2e-162 574.7 382 79.8
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 7.0e-159 564.3 371 77.6
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 3.5e-158 562.0 367 79.3
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 5.9e-158 561.2 372 77.2
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 1.7e-157 559.7 365 79.5
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.5e-156 556.6 371 76.8
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 8.0e-155 550.8 361 78.9
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 3.1e-154 548.9 355 78.3
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 3.1e-154 548.9 355 78.3
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 4.0e-154 548.5 374 77.5
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 4.0e-154 548.5 355 78.3
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 1.5e-153 546.6 375 76.0
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 1.5e-153 546.6 346 81.2
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 1.5e-153 546.6 355 78.0
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 2.6e-153 545.8 356 78.4
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 2.6e-153 545.8 355 79.7
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 5.8e-153 544.7 346 80.6
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 5.8e-153 544.7 378 76.5
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 7.5e-153 544.3 365 77.8
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.7e-152 543.1 349 80.8
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.7e-152 543.1 362 78.5
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 2.2e-152 542.7 325 85.5
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 3.7e-152 542.0 323 84.2
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 4.9e-152 541.6 376 76.9
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 6.4e-152 541.2 381 74.8
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 6.4e-152 541.2 355 76.9
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 6.4e-152 541.2 371 76.0
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 6.4e-152 541.2 359 77.4
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 8.3e-152 540.8 354 79.7
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 8.3e-152 540.8 350 78.3
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 8.3e-152 540.8 369 77.0
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.1e-151 540.4 369 76.4
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.9e-151 539.7 383 74.7
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.9e-151 539.7 368 75.5
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 2.4e-151 539.3 373 76.1
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 3.2e-151 538.9 376 76.3
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.4e-151 538.1 358 78.5
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 1.2e-150 537.0 382 73.8
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 1.6e-150 536.6 360 78.1
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 1.6e-150 536.6 337 80.1
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 2.0e-150 536.2 354 78.8
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 2.7e-150 535.8 369 76.4
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 4.6e-150 535.0 378 74.6
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.6e-150 535.0 358 77.9
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 1.0e-149 533.9 383 73.4
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.0e-149 533.9 352 78.1
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 1.3e-149 533.5 383 74.2
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 1.3e-149 533.5 378 74.6
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.3e-149 533.5 348 79.3
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.3e-149 532.7 370 72.4
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.3e-149 532.7 370 72.4
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 3.0e-149 532.3 367 77.1
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 3.9e-149 531.9 373 75.3
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 5.0e-149 531.6 369 75.6
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 5.0e-149 531.6 339 79.9
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 6.6e-149 531.2 366 76.0
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 8.6e-149 530.8 352 77.6
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 8.6e-149 530.8 349 77.9
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 8.6e-149 530.8 324 83.3
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 1.1e-148 530.4 354 78.2
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.1e-148 530.4 352 77.6
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 1.1e-148 530.4 331 81.6
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 1.5e-148 530.0 369 75.6
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.5e-148 530.0 369 75.6
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.5e-148 530.0 323 82.4
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 1.9e-148 529.6 355 77.2
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 3.3e-148 528.9 374 75.4
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 7.3e-148 527.7 361 75.3
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 7.3e-148 527.7 361 75.3
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 9.5e-148 527.3 349 78.8
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.2e-147 526.9 366 75.7
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 1.6e-147 526.6 354 77.1
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 1.6e-147 526.6 354 77.1
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 1.6e-147 526.6 379 74.4
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 2.1e-147 526.2 370 74.1
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.8e-147 525.8 349 77.1
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 2.8e-147 525.8 325 81.8
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 4.7e-147 525.0 359 74.9
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 4.7e-147 525.0 352 77.0
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 4.7e-147 525.0 357 76.8
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 4.7e-147 525.0 366 76.2
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 8.1e-147 524.2 377 73.2
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 8.1e-147 524.2 354 76.6
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 8.1e-147 524.2 369 74.0
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 1.1e-146 523.9 336 80.1
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 1.4e-146 523.5 348 77.9
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 1.4e-146 523.5 354 76.6
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 1.4e-146 523.5 354 76.6
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 1.4e-146 523.5 348 78.4
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.8e-146 523.1 366 75.1
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.8e-146 523.1 339 78.2
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.0e-146 521.9 349 76.2
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 4.0e-146 521.9 330 80.3
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.2e-146 521.5 385 70.9
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 5.2e-146 521.5 464 62.5
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 8.9e-146 520.8 349 77.4
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 1.2e-145 520.4 356 75.6
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 1.5e-145 520.0 365 74.0
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 2.6e-145 519.2 356 75.6
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 2.6e-145 519.2 351 76.4
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 2.6e-145 519.2 325 81.5
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 1.7e-144 516.5 351 74.6
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 2.9e-144 515.8 333 78.4
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 3.7e-144 515.4 357 74.5
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 4.9e-144 515.0 358 75.7
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 8.3e-144 514.2 380 72.4
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.4e-143 513.5 368 73.4
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.4e-143 513.5 368 73.4
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 4.1e-143 511.9 348 75.0
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 7.1e-143 511.1 355 72.7
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 9.2e-143 510.8 349 75.9
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 1.6e-142 510.0 306 84.3
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.6e-142 510.0 300 83.7
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.1e-142 509.6 347 75.8
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 6.0e-142 508.1 355 72.4
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 1.3e-141 506.9 447 63.8
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 2.3e-141 506.1 349 75.1
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 2.3e-141 506.1 368 71.5
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 3.0e-141 505.8 360 72.5
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.9e-140 503.1 365 71.5
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 1.2e-139 500.4 282 88.7
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 1.6e-139 500.0 436 64.0
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 8.9e-138 494.2 324 77.8
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 2.2e-136 489.6 355 72.4
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 2.4e-135 486.1 359 70.8
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.2e-135 485.7 282 85.1
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 2.3e-133 479.6 324 73.5
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 5.1e-133 478.4 340 71.5
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 6.6e-133 478.0 344 74.1
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 6.6e-133 478.0 313 76.7
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 4.3e-132 475.3 327 73.1
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 4.3e-132 475.3 336 72.9
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.8e-131 472.6 340 71.2
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 4.0e-130 468.8 356 69.9
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 6.4e-128 461.5 300 76.0
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 3.2e-127 459.1 319 73.4
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 7.1e-127 458.0 299 75.6
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 1.6e-126 456.8 309 74.8
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 2.7e-126 456.1 331 70.7
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 3.4e-113 412.5 330 65.2
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 1.7e-112 410.2 276 79.7
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 6.2e-107 391.7 250 80.8
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 8.1e-107 391.3 307 65.8
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 1.9e-103 380.2 255 78.0
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.6e-94 350.5 289 61.2
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 1.9e-92 343.6 256 72.3
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 9.1e-74 281.6 271 59.0
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 8.5e-72 275.0 209 68.9
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 8.8e-69 265.0 201 72.1
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 2.6e-68 263.5 308 50.3
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 3.5e-65 253.1 374 43.9
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 3.3e-47 193.4 113 81.4
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 7.5e-44 182.2 113 78.8
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 1.2e-41 174.9 189 58.7
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 1.2e-41 174.9 170 61.2
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 1.2e-41 174.9 170 61.2
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 6.0e-33 146.0 101 69.3
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 7.8e-33 145.6 326 32.8
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 1.1e-31 141.7 99 69.7
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 1.1e-31 141.7 99 69.7
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 7.3e-31 139.0 99 68.7
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 9.5e-31 138.7 98 68.4
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 2.1e-30 137.5 103 66.0
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 6.8e-29 132.5 104 61.5
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 9.9e-28 128.6 103 61.2
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 2.4e-18 97.4 64 73.4
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 2.3e-16 90.9 61 82.0
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 3.0e-16 90.5 49 89.8
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 3.3e-15 87.0 67 68.7
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 3.0e-08 63.9 35 74.3
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 2.5e-07 60.8 37 67.6


User provided reference genes

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