Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 1.3e-230 802.7 413 100.0
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 6.7e-179 630.9 375 87.2
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 2.7e-172 609.0 381 84.5
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 8.7e-171 604.0 378 83.3
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 5.3e-168 594.7 374 83.2
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 1.4e-165 586.6 375 80.8
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 9.4e-165 583.9 378 81.2
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 1.0e-163 580.5 426 74.9
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 6.9e-160 567.8 382 80.4
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 3.4e-159 565.5 367 79.3
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 1.4e-157 560.1 375 78.4
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 3.2e-157 558.9 372 77.7
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 7.2e-157 557.8 354 80.8
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 2.1e-156 556.2 359 78.8
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 3.0e-155 552.4 376 76.6
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 8.8e-155 550.8 358 79.9
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 4.4e-154 548.5 358 79.3
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 5.7e-154 548.1 373 75.6
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.3e-153 547.0 350 81.1
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 3.7e-153 545.4 353 77.9
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 6.3e-153 544.7 326 84.0
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.8e-152 543.1 382 74.6
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 1.8e-152 543.1 327 84.4
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 2.4e-152 542.7 329 82.1
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 3.1e-152 542.3 372 76.9
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.1e-152 542.3 362 77.6
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 3.1e-152 542.3 353 77.6
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 4.1e-152 542.0 382 74.6
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 4.1e-152 542.0 353 77.6
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 9.1e-152 540.8 381 75.3
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 9.1e-152 540.8 368 77.4
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 9.1e-152 540.8 382 74.6
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 9.1e-152 540.8 356 78.7
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 1.2e-151 540.4 362 77.3
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 1.2e-151 540.4 357 78.4
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.6e-151 540.0 368 77.7
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.6e-151 540.0 329 82.7
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 2.0e-151 539.7 382 74.9
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 2.6e-151 539.3 366 78.4
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 3.5e-151 538.9 326 83.7
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 4.5e-151 538.5 363 76.9
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 4.5e-151 538.5 378 75.7
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 5.9e-151 538.1 330 83.3
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 7.7e-151 537.7 365 77.0
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 1.0e-150 537.3 327 82.9
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 1.3e-150 537.0 347 80.1
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.7e-150 536.6 355 77.7
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.9e-150 535.8 348 77.6
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 5.0e-150 535.0 329 82.7
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 5.0e-150 535.0 353 79.0
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 6.5e-150 534.6 337 81.3
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 6.5e-150 534.6 339 80.5
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.1e-149 533.9 338 81.1
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 1.5e-149 533.5 382 74.3
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 1.5e-149 533.5 382 74.3
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.5e-149 533.5 346 79.2
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.9e-149 533.1 358 75.7
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 1.9e-149 533.1 376 74.2
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 2.5e-149 532.7 377 75.1
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 2.5e-149 532.7 338 81.1
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.2e-149 531.9 325 82.5
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 4.2e-149 531.9 339 79.1
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 4.2e-149 531.9 359 75.2
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 4.2e-149 531.9 359 75.2
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 7.2e-149 531.2 324 83.3
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 7.2e-149 531.2 327 81.7
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 9.4e-149 530.8 382 74.1
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 2.7e-148 529.3 334 79.6
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 3.6e-148 528.9 382 73.6
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 6.1e-148 528.1 366 75.1
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 6.1e-148 528.1 371 75.2
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 6.1e-148 528.1 357 76.8
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 1.0e-147 527.3 358 77.9
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 1.0e-147 527.3 358 77.9
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 1.0e-147 527.3 351 77.2
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 1.4e-147 526.9 325 82.2
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 1.4e-147 526.9 376 73.9
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.4e-147 526.9 337 79.8
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 1.4e-147 526.9 334 80.5
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 1.8e-147 526.6 376 73.1
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.3e-147 526.2 325 81.5
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 3.0e-147 525.8 352 78.7
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 3.0e-147 525.8 382 73.8
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 3.0e-147 525.8 382 73.0
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 3.0e-147 525.8 325 81.5
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 3.0e-147 525.8 384 71.9
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 5.2e-147 525.0 356 76.4
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 5.2e-147 525.0 356 77.0
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 1.5e-146 523.5 340 80.0
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 1.5e-146 523.5 325 82.5
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 2.6e-146 522.7 388 71.1
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 3.3e-146 522.3 352 78.1
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 3.3e-146 522.3 335 80.6
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 3.3e-146 522.3 325 81.5
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.3e-146 522.3 343 78.7
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 5.7e-146 521.5 376 72.3
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.7e-146 521.5 376 72.3
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 5.7e-146 521.5 371 73.0
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 5.7e-146 521.5 463 62.2
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 7.5e-146 521.2 361 74.0
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 7.5e-146 521.2 323 81.4
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 9.7e-146 520.8 380 73.4
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 9.7e-146 520.8 366 73.5
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 9.7e-146 520.8 364 74.5
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 1.3e-145 520.4 352 77.8
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 1.3e-145 520.4 354 76.6
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 1.3e-145 520.4 352 77.8
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.7e-145 520.0 324 80.6
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 2.2e-145 519.6 317 83.3
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 2.8e-145 519.2 355 75.8
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 3.7e-145 518.8 328 80.2
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 6.3e-145 518.1 358 75.7
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 8.2e-145 517.7 380 72.9
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 1.1e-144 517.3 356 75.8
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 1.8e-144 516.5 351 76.4
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.8e-144 516.5 383 70.2
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 1.8e-144 516.5 322 81.7
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.1e-144 515.4 373 72.1
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.9e-141 506.5 313 81.5
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 3.2e-141 505.8 349 75.1
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.2e-140 503.8 375 70.4
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.2e-140 503.8 375 70.4
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.2e-140 503.8 330 75.8
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 3.6e-140 502.3 349 73.9
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 6.1e-140 501.5 326 77.9
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.1e-140 501.5 300 82.3
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 8.0e-140 501.1 354 72.0
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 6.8e-139 498.0 301 82.4
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 3.4e-138 495.7 354 71.2
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 7.5e-138 494.6 357 73.9
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 6.3e-137 491.5 283 86.2
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 2.4e-136 489.6 382 69.9
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 4.1e-136 488.8 301 81.1
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.8e-134 482.3 283 84.8
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 4.2e-133 478.8 316 78.8
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 7.2e-133 478.0 322 74.2
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 9.4e-133 477.6 330 73.3
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.2e-132 477.2 313 77.3
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.1e-132 476.5 314 76.8
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 3.6e-132 475.7 325 73.2
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 6.8e-131 471.5 380 68.4
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.0e-130 469.9 399 64.2
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 4.9e-129 465.3 332 71.7
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.0e-127 459.9 317 74.4
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 1.7e-126 456.8 327 73.1
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 2.3e-126 456.4 299 75.9
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 1.5e-125 453.8 300 75.3
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 1.8e-115 420.2 259 85.7
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 2.7e-111 406.4 297 70.0
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 3.1e-107 392.9 312 65.4
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 5.2e-107 392.1 250 80.4
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 3.0e-102 376.3 231 83.5
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 4.9e-97 359.0 290 63.4
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 1.5e-93 347.4 272 69.9
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 1.3e-73 281.2 284 58.1
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 1.0e-70 271.6 165 82.4
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 8.7e-70 268.5 309 50.8
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 2.1e-68 263.8 203 70.9
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 9.0e-67 258.5 375 44.3
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 4.6e-47 193.0 113 79.6
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 3.1e-43 180.3 113 78.8
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 2.9e-41 173.7 226 52.2
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 1.1e-40 171.8 200 55.5
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 1.1e-40 171.8 200 55.5
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 4.5e-34 149.8 380 31.8
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 2.9e-33 147.1 100 72.0
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 5.5e-32 142.9 99 71.7
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 5.5e-32 142.9 99 71.7
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 3.6e-31 140.2 99 70.7
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 4.7e-31 139.8 98 70.4
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 8.0e-31 139.0 103 68.0
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 1.2e-29 135.2 104 64.4
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.7e-28 131.3 103 64.1
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 3.1e-19 100.5 64 75.0
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 2.1e-15 87.8 49 85.7
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 2.1e-15 87.8 61 78.7
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 4.7e-15 86.7 67 68.7
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 1.2e-07 62.0 35 77.1
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 1.0e-06 58.9 37 70.3


User provided reference genes

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