Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 0.0e+00 1097.8 558 100.0
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 1.2e-260 902.9 562 85.1
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 1.7e-233 812.8 563 76.0
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 2.9e-233 812.0 539 80.3
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 7.1e-192 674.5 559 64.8
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 1.6e-188 663.3 575 62.8
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 1.2e-186 657.1 587 61.3
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 1.9e-184 649.8 578 59.7
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 1.9e-184 649.8 573 61.1
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 1.2e-183 647.1 588 61.2
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 4.6e-183 645.2 580 61.2
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 1.3e-182 643.7 577 60.0
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 1.8e-182 643.3 583 60.2
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 3.0e-182 642.5 566 62.2
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 3.9e-182 642.1 577 60.7
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 1.1e-181 640.6 575 60.9
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 1.5e-181 640.2 576 60.9
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 2.5e-181 639.4 567 60.0
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 2.5e-181 639.4 566 61.1
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 3.7e-180 635.6 573 60.2
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 8.2e-180 634.4 581 60.1
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 1.8e-179 633.3 583 59.3
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 5.3e-179 631.7 602 58.3
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 1.2e-178 630.6 586 59.2
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 2.0e-178 629.8 579 59.2
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 3.4e-178 629.0 579 59.2
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 4.5e-178 628.6 570 60.0
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 1.0e-177 627.5 573 58.8
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 2.2e-177 626.3 577 58.6
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 5.0e-177 625.2 574 59.1
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 5.0e-177 625.2 585 58.8
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 1.4e-176 623.6 566 60.6
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 1.9e-176 623.2 598 57.0
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 1.9e-176 623.2 578 59.7
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 7.1e-176 621.3 581 57.8
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 7.1e-176 621.3 578 59.5
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 7.1e-176 621.3 590 59.0
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 9.3e-176 620.9 577 59.1
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 1.6e-175 620.2 567 59.6
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 4.6e-175 618.6 567 58.9
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 6.1e-175 618.2 575 58.3
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 6.1e-175 618.2 586 58.5
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 7.9e-175 617.8 571 58.3
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 7.9e-175 617.8 590 57.6
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 1.8e-174 616.7 570 58.1
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 1.8e-174 616.7 570 58.1
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 2.3e-174 616.3 588 56.5
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 2.3e-174 616.3 568 59.2
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 2.3e-174 616.3 568 60.6
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 3.0e-174 615.9 574 58.5
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 3.0e-174 615.9 567 58.7
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 1.5e-173 613.6 583 58.3
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 1.9e-173 613.2 570 58.2
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 4.3e-173 612.1 562 59.6
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 2.2e-172 609.8 565 59.1
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 2.8e-172 609.4 551 60.8
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 1.1e-171 607.4 577 57.7
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 2.4e-171 606.3 588 56.5
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 4.1e-171 605.5 577 57.2
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 4.1e-171 605.5 594 56.4
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 6.9e-171 604.7 604 56.8
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 3.4e-170 602.4 588 56.6
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 7.7e-170 601.3 576 57.3
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 2.2e-169 599.7 589 57.0
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 6.5e-169 598.2 592 56.8
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 1.1e-168 597.4 565 57.7
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 4.6e-167 592.0 561 58.5
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 1.8e-166 590.1 589 56.4
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 2.3e-166 589.7 565 57.5
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 3.9e-166 589.0 615 55.3
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 2.0e-165 586.6 557 57.6
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 2.0e-165 586.6 634 53.0
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 2.5e-165 586.3 592 55.2
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 1.7e-164 583.6 600 54.3
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 2.2e-164 583.2 556 58.1
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 6.3e-164 581.6 680 51.5
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 2.2e-161 573.2 583 55.1
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 2.2e-161 573.2 578 55.9
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 1.4e-160 570.5 576 54.9
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 5.7e-157 558.5 575 55.0
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 2.2e-153 546.6 606 51.7
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 2.9e-153 546.2 576 53.0
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 3.9e-150 535.8 553 53.7
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 5.7e-149 531.9 528 54.9
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 7.4e-149 531.6 594 51.5
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 8.2e-148 528.1 576 53.8
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 1.4e-147 527.3 485 58.4
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 7.7e-146 521.5 518 56.4
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 6.5e-145 518.5 545 55.4
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 3.2e-144 516.2 424 64.9
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 4.7e-143 512.3 600 50.7
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.5e-141 507.3 535 55.3
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 3.4e-141 506.1 541 54.2
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 4.8e-140 502.3 456 59.6
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 8.3e-140 501.5 537 54.4
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 4.1e-139 499.2 527 53.9
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 6.5e-137 491.9 597 46.7
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 1.5e-136 490.7 493 54.4
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 6.6e-129 465.3 450 56.4
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 9.8e-117 424.9 558 47.1
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 1.9e-115 420.6 565 43.7
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 2.6e-109 400.2 316 64.9
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 4.1e-107 392.9 393 56.2
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 3.9e-105 386.3 315 62.9
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 3.3e-104 383.3 588 40.0
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 8.9e-102 375.2 377 53.3
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 4.3e-96 356.3 379 49.1
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 2.6e-93 347.1 369 53.4
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 9.6e-88 328.6 552 39.9
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 1.3e-87 328.2 421 48.0
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 2.9e-84 317.0 360 45.6
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.0e-81 308.5 371 50.9
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.7e-74 283.9 283 56.2
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 6.0e-74 282.7 271 57.9
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 3.8e-68 263.5 257 53.3
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 3.8e-68 263.5 200 66.5
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 1.4e-67 261.5 569 30.8
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 8.7e-65 252.3 200 65.0
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 5.7e-64 249.6 259 55.2
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 1.1e-62 245.4 272 52.6
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 7.6e-61 239.2 545 33.0
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 1.6e-58 231.5 270 50.7
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 8.7e-57 225.7 561 29.2
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 3.3e-56 223.8 350 36.0
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 5.9e-53 213.0 180 61.1
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 2.2e-52 211.1 282 47.2
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 6.5e-52 209.5 353 35.1
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 6.5e-52 209.5 175 58.9
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 2.6e-40 171.0 96 83.3
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 4.8e-39 166.8 85 89.4
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 9.7e-32 142.5 82 79.3
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 5.0e-28 130.2 394 27.4
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 1.4e-25 122.1 67 85.1
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 2.8e-23 114.4 409 22.5
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 9.1e-22 109.4 141 47.5
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 2.9e-20 104.4 62 75.8
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 2.5e-19 101.3 600 22.8
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 7.5e-16 89.7 127 44.1
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 9.2e-14 82.8 210 27.1
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 1.0e-12 79.3 41 87.8


User provided reference genes

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