Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C032537.2 Cucumis melo HOM05D001816 ORTHO05D002001 2.7e-32 141.4 69 100.0
MELO3C000425.2 Cucumis melo HOM05D001816 ORTHO05D002001 3.0e-31 137.9 69 97.1
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 3.5e-08 61.2 29 100.0
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 3.5e-08 61.2 29 100.0
Cpa.g.sc1758.1 Carica papaya HOM05D001816 ORTHO05D002001 7.9e-08 60.1 29 96.6
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 7.9e-08 60.1 29 96.6
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 7.9e-08 60.1 29 96.6
Cfa015943 Carpinus fangiana HOM05D001816 ORTHO05D002001 1.0e-07 59.7 29 96.6
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 1.0e-07 59.7 29 96.6
Lj8C169G8 Lonicera japonica HOM05D001816 ORTHO05D002001 1.0e-07 59.7 29 93.1
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 1.0e-07 59.7 29 93.1
Nitab4.5_0009278g0020 Nicotiana tabacum HOM05D001816 ORTHO05D002001 1.0e-07 59.7 29 93.1
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 1.0e-07 59.7 29 93.1
Peaxi162Scf00516g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 1.0e-07 59.7 29 93.1
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 1.0e-07 59.7 29 96.6
Prupe.1G345900 Prunus persica HOM05D001816 ORTHO05D002001 1.0e-07 59.7 29 96.6
QL03p043876 Quercus lobata HOM05D001816 ORTHO05D002001 1.0e-07 59.7 29 96.6
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 1.0e-07 59.7 29 96.6
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 1.0e-07 59.7 29 93.1
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 1.0e-07 59.7 29 93.1
Atru.chr9.1432 Acer truncatum HOM05D001816 ORTHO05D002001 1.3e-07 59.3 29 93.1
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 1.3e-07 59.3 29 93.1
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 1.3e-07 59.3 29 93.1
MD16G1000800 Malus domestica HOM05D001816 ORTHO05D002001 1.3e-07 59.3 29 93.1
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 1.3e-07 59.3 29 93.1
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 1.3e-07 59.3 29 93.1
VMungo1127G1305 Vigna mungo HOM05D001816 ORTHO05D002001 1.3e-07 59.3 29 93.1
Aa31LG10G3980 Aethionema arabicum HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
Ah.15g091020 Amaranthus hybridus HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 89.7
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
BcaB07g33474 Brassica carinata HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
BcaC05g27449 Brassica carinata HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
BcaC08g43202 Brassica carinata HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
A06p03300 Brassica napus HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
C05p34040 Brassica napus HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
C06p05260 Brassica napus HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
BolC3t21267H Brassica oleracea HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
BolC5t32139H Brassica oleracea HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
BolC6t35631H Brassica oleracea HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
BolC6t35636H Brassica oleracea HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
BraA06t23540Z Brassica rapa HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
Migut.F00930 Erythranthe guttata HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 89.7
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 93.1
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 89.7
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 1.8e-07 58.9 29 96.6
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 2.3e-07 58.5 29 89.7
CAN.G732.34 Capsicum annuum HOM05D001816 ORTHO05D002001 2.3e-07 58.5 29 89.7
CAN.G899.11 Capsicum annuum HOM05D001816 ORTHO05D002001 2.3e-07 58.5 29 89.7
AUR62015043 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.3e-07 58.5 29 89.7
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.3e-07 58.5 29 89.7
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.3e-07 58.5 29 89.7
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.3e-07 58.5 29 89.7
Cc11_g00060 Coffea canephora HOM05D001816 ORTHO05D002001 2.3e-07 58.5 29 93.1
MSTRG.3 Avicennia marina HOM05D001816 ORTHO05D002001 3.0e-07 58.2 29 89.7
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 3.0e-07 58.2 29 93.1
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 3.0e-07 58.2 29 89.7
ECA246G0614 Erigeron canadensis HOM05D001816 ORTHO05D002001 3.0e-07 58.2 29 89.7
FvH4_4g36780 Fragaria vesca HOM05D001816 ORTHO05D002001 3.0e-07 58.2 28 96.4
FAN07G1183 Fragaria x ananassa HOM05D001816 ORTHO05D002001 3.0e-07 58.2 28 96.4
FAN12G0939 Fragaria x ananassa HOM05D001816 ORTHO05D002001 3.0e-07 58.2 28 96.4
FAN17G1219 Fragaria x ananassa HOM05D001816 ORTHO05D002001 3.0e-07 58.2 28 96.4
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 3.0e-07 58.2 29 93.1
Sabra05G0078100 Salix brachista HOM05D001816 ORTHO05D002001 3.0e-07 58.2 29 93.1
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 3.0e-07 58.2 29 93.1
TPR.G32335 Trifolium pratense HOM05D001816 ORTHO05D002001 3.0e-07 58.2 29 93.1
MELO3C027271.2 Cucumis melo HOM05D001816 ORTHO05D026252 3.9e-07 57.8 36 75.0
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 3.9e-07 57.8 29 93.1
TWI77G0632 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 3.9e-07 57.8 29 89.7
TAR629G2582 Trochodendron aralioides HOM05D001816 ORTHO05D002001 3.9e-07 57.8 29 89.7
Ah.08g210750 Amaranthus hybridus HOM05D001816 ORTHO05D002001 5.1e-07 57.4 29 86.2
Aqoxy7G03361 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 5.1e-07 57.4 29 89.7
Lsat_1_v5_gn_7_108581 Lactuca sativa HOM05D001816 ORTHO05D002001 5.1e-07 57.4 29 86.2
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 6.7e-07 57.0 29 86.2
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 6.7e-07 57.0 29 86.2
HanXRQChr11g0337711 Helianthus annuus HOM05D001816 ORTHO05D002001 6.7e-07 57.0 29 89.7
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 6.7e-07 57.0 29 89.7
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 6.7e-07 57.0 29 89.7
Lalb_Chr03g0024831 Lupinus albus HOM05D001816 ORTHO05D002001 6.7e-07 57.0 29 89.7
Sc06g0002420 Simmondsia chinensis HOM05D001816 ORTHO05D002001 6.7e-07 57.0 29 89.7
SGA_v2.0_scaffold59G20731 Striga asiatica HOM05D001816 ORTHO05D002001 6.7e-07 57.0 29 86.2
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea HOM05D001816 ORTHO05D002001 8.7e-07 56.6 27 96.3
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 8.7e-07 56.6 27 96.3
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 8.7e-07 56.6 29 93.1
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 8.7e-07 56.6 29 86.2
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 8.7e-07 56.6 29 93.1
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 8.7e-07 56.6 28 89.3
ATR0019G036 Amborella trichopoda HOM05D001816 ORTHO05D002001 1.1e-06 56.2 29 89.7
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 1.1e-06 56.2 29 86.2
CDE05G2317 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 1.1e-06 56.2 29 86.2
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 1.1e-06 56.2 29 89.7
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 1.1e-06 56.2 29 89.7
Hund19354 Selenicereus undatus HOM05D001816 ORTHO05D002001 1.1e-06 56.2 29 86.2
TAR185G0001 Trochodendron aralioides HOM05D001816 ORTHO05D002001 1.1e-06 56.2 28 89.3
TAR624G0546 Trochodendron aralioides HOM05D001816 ORTHO05D002001 1.1e-06 56.2 28 89.3
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 1.5e-06 55.8 29 89.7
Os10g0182000 Oryza sativa ssp. japonica HOM05D001816 ORTHO05D002001 1.5e-06 55.8 28 89.3
PSO063G5047 Papaver somniferum HOM05D001816 ORTHO05D002001 1.5e-06 55.8 29 89.7
PSO063G5328 Papaver somniferum HOM05D001816 ORTHO05D002001 1.5e-06 55.8 29 89.7
PSO111G0090 Papaver somniferum HOM05D001816 ORTHO05D002001 1.5e-06 55.8 29 89.7
PSO782G0984 Papaver somniferum HOM05D001816 ORTHO05D002001 1.5e-06 55.8 29 89.7
HPP92_007958 Vanilla planifolia HOM05D001816 ORTHO05D002001 1.5e-06 55.8 28 89.3
GSVIVG01012030001 Vitis vinifera HOM05D001816 ORTHO05D002001 1.5e-06 55.8 29 86.2
Duzib052G1218 Durio zibethinus HOM05D001816 ORTHO05D002001 1.9e-06 55.5 28 89.3
Duzib248G0227 Durio zibethinus HOM05D001816 ORTHO05D002001 1.9e-06 55.5 28 89.3
Eucgr.J00856 Eucalyptus grandis HOM05D001816 ORTHO05D002001 1.9e-06 55.5 28 89.3
Gohir.A03G164100 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.9e-06 55.5 28 89.3
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.9e-06 55.5 28 89.3
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 1.9e-06 55.5 28 89.3
Hma1.2p1_0061F.1_g034040 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 1.9e-06 55.5 28 85.7
Lalb_Chr01g0001481 Lupinus albus HOM05D001816 ORTHO05D002001 1.9e-06 55.5 29 86.2
SEGI_12349 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 1.9e-06 55.5 29 79.3
Thecc.02G161500 Theobroma cacao HOM05D001816 ORTHO05D002001 1.9e-06 55.5 28 89.3
TWI74G1422 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 1.9e-06 55.5 29 82.8
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 1.9e-06 55.5 28 85.7
Glyma.11G102100 Glycine max HOM05D001816 ORTHO05D002001 2.5e-06 55.1 29 82.8
Phvul.011G031100 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 2.5e-06 55.1 29 82.8
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 2.5e-06 55.1 27 88.9
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 2.5e-06 55.1 29 86.2
Gohir.A12G134600 Gossypium hirsutum HOM05D001816 ORTHO05D002001 3.3e-06 54.7 28 89.3
Gohir.D12G138232 Gossypium hirsutum HOM05D001816 ORTHO05D002001 3.3e-06 54.7 28 89.3
Gorai.008G149700 Gossypium raimondii HOM05D001816 ORTHO05D002001 3.3e-06 54.7 28 89.3
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 3.3e-06 54.7 29 86.2
Oeu028987.2 Olea europaea HOM05D001816 ORTHO05D002001 3.3e-06 54.7 29 86.2
unitig_62.g23836 Utricularia gibba HOM05D001816 ORTHO05D002001 4.3e-06 54.3 29 82.8
COL.COLO4_03690 Corchorus olitorius HOM05D001816 ORTHO05D002001 7.4e-06 53.5 28 85.7
Sp3g25110 Schrenkiella parvula HOM05D001816 ORTHO05D002001 7.4e-06 53.5 29 86.2
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 9.6e-06 53.1 29 82.8
Glyma.12G027850 Glycine max HOM05D001816 ORTHO05D002001 9.6e-06 53.1 29 82.8
Medtr4g074670 Medicago truncatula HOM05D001816 ORTHO05D002001 9.6e-06 53.1 29 82.8
MCO03G183 Micromonas commoda HOM05D001816 ORTHO05D002001 9.6e-06 53.1 27 88.9


User provided reference genes

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