Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C030524.2 Cucumis melo HOM05D000104 ORTHO05D004881 2.0e-40 168.7 90 100.0
MELO3C014569.2 Cucumis melo HOM05D000104 ORTHO05D004881 2.4e-20 102.1 63 85.7
ClCG02G022980 Citrullus lanatus HOM05D000104 ORTHO05D004881 1.2e-19 99.8 63 84.1
CsaV3_6G039100 Cucumis sativus L. HOM05D000104 ORTHO05D004881 3.4e-19 98.2 63 84.1
Actinidia16360 Actinidia chinensis HOM05D000104 ORTHO05D004881 1.4e-17 92.8 55 83.6
CSS0013867 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004881 1.4e-17 92.8 55 85.5
CiPaw.13G152700 Carya illinoinensis HOM05D000104 ORTHO05D004881 1.4e-17 92.8 55 85.5
Sed0002979 Sechium edule HOM05D000104 ORTHO05D004881 1.4e-17 92.8 63 77.8
Cfa009834 Carpinus fangiana HOM05D000104 ORTHO05D004881 1.9e-17 92.4 55 85.5
Haze_23201 Corylus avellana HOM05D000104 ORTHO05D004881 1.9e-17 92.4 55 85.5
FvH4_3g28110 Fragaria vesca HOM05D000104 ORTHO05D004881 1.9e-17 92.4 55 87.3
FAN11G2466 Fragaria x ananassa HOM05D000104 ORTHO05D004881 1.9e-17 92.4 55 87.3
FAN16G0103 Fragaria x ananassa HOM05D000104 ORTHO05D004881 1.9e-17 92.4 55 87.3
FAN16G2830 Fragaria x ananassa HOM05D000104 ORTHO05D004881 1.9e-17 92.4 55 87.3
FAN21G2988 Fragaria x ananassa HOM05D000104 ORTHO05D004881 1.9e-17 92.4 55 87.3
FAN25G0427 Fragaria x ananassa HOM05D000104 ORTHO05D004881 1.9e-17 92.4 55 87.3
Potri.009G047800 Populus trichocarpa HOM05D000104 ORTHO05D004881 1.9e-17 92.4 55 85.5
Prupe.4G258700 Prunus persica HOM05D000104 ORTHO05D004881 1.9e-17 92.4 55 87.3
QL01p017715 Quercus lobata HOM05D000104 ORTHO05D004881 1.9e-17 92.4 55 85.5
RcHm_v2.0_Chr5g0050791 Rosa chinensis HOM05D000104 ORTHO05D004881 1.9e-17 92.4 55 87.3
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 1.9e-17 92.4 55 85.5
DCAR_002093 Daucus carota HOM05D000104 ORTHO05D004881 3.2e-17 91.7 63 74.6
Psat5g195080 Pisum sativum HOM05D000104 ORTHO05D004881 3.2e-17 91.7 58 81.0
Potri.001G253400 Populus trichocarpa HOM05D000104 ORTHO05D004881 3.2e-17 91.7 63 76.2
arahy.Tifrunner.gnm1.ann1.F2KJX5 Arachis hypogaea HOM05D000104 ORTHO05D004881 4.2e-17 91.3 55 83.6
arahy.Tifrunner.gnm1.ann1.Q1C604 Arachis hypogaea HOM05D000104 ORTHO05D004881 4.2e-17 91.3 55 83.6
CSS0005534 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004881 4.2e-17 91.3 63 74.6
COL.COLO4_07230 Corchorus olitorius HOM05D000104 ORTHO05D004881 4.2e-17 91.3 55 85.5
Manes.01G181800 Manihot esculenta HOM05D000104 ORTHO05D004881 4.2e-17 91.3 55 83.6
TAR636G3192 Trochodendron aralioides HOM05D000104 ORTHO05D004881 4.2e-17 91.3 55 85.5
CAN.G484.5 Capsicum annuum HOM05D000104 ORTHO05D004881 5.4e-17 90.9 55 85.5
Lj1C295T5 Lonicera japonica HOM05D000104 ORTHO05D004881 5.4e-17 90.9 54 83.3
Lj1C304T4 Lonicera japonica HOM05D000104 ORTHO05D004881 5.4e-17 90.9 54 83.3
Solyc12g099910.2 Solanum lycopersicum HOM05D000104 ORTHO05D004881 5.4e-17 90.9 55 85.5
Sopen12g034530 Solanum pennellii HOM05D000104 ORTHO05D004881 5.4e-17 90.9 55 85.5
TPR.G26010 Trifolium pratense HOM05D000104 ORTHO05D004881 5.4e-17 90.9 55 85.5
EL10Ac4g10173 Beta vulgaris HOM05D000104 ORTHO05D004881 7.1e-17 90.5 62 77.4
Eucgr.J00717 Eucalyptus grandis HOM05D000104 ORTHO05D004881 7.1e-17 90.5 55 83.6
PGR119G1457 Punica granatum HOM05D000104 ORTHO05D004881 7.1e-17 90.5 55 83.6
SEGI_37148 Sequoiadendron giganteum HOM05D000104 ORTHO05D004881 7.1e-17 90.5 55 83.6
Migut.N02364 Erythranthe guttata HOM05D000104 ORTHO05D004881 9.2e-17 90.1 63 76.2
Glyma.14G033600 Glycine max HOM05D000104 ORTHO05D004881 9.2e-17 90.1 55 83.6
PSO384G4411 Papaver somniferum HOM05D000104 ORTHO05D004881 9.2e-17 90.1 63 74.6
unitig_699.g19140 Utricularia gibba HOM05D000104 ORTHO05D004881 9.2e-17 90.1 63 74.6
LjContig00049g0001527 Lotus japonicus HOM05D000104 ORTHO05D004881 1.2e-16 89.7 55 81.8
Manes.02G141700 Manihot esculenta HOM05D000104 ORTHO05D004881 1.6e-16 89.4 55 81.8
Atru.chr3.2807 Acer truncatum HOM05D000104 ORTHO05D004881 2.1e-16 89.0 55 83.6
Cc01_g05810 Coffea canephora HOM05D000104 ORTHO05D004881 2.1e-16 89.0 63 74.6
MBI13_g29528_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004881 2.1e-16 89.0 55 83.6
Nitab4.5_0001925g0220 Nicotiana tabacum HOM05D000104 ORTHO05D004881 2.1e-16 89.0 55 83.6
Nitab4.5_0011766g0020 Nicotiana tabacum HOM05D000104 ORTHO05D004881 2.1e-16 89.0 55 83.6
Psat2g019640 Pisum sativum HOM05D000104 ORTHO05D004881 2.1e-16 89.0 55 83.6
Rhsim13G0216000 Rhododendron simsii HOM05D000104 ORTHO05D004881 2.1e-16 89.0 54 85.2
TWI75G1602 Tripterygium wilfordii HOM05D000104 ORTHO05D004881 2.1e-16 89.0 53 83.0
Gohir.A13G217600 Gossypium hirsutum HOM05D000104 ORTHO05D004881 2.7e-16 88.6 55 81.8
Gohir.D13G221200 Gossypium hirsutum HOM05D000104 ORTHO05D004881 2.7e-16 88.6 55 81.8
Thecc.09G243900 Theobroma cacao HOM05D000104 ORTHO05D004881 2.7e-16 88.6 55 81.8
Medtr3g053910 Medicago truncatula HOM05D000104 ORTHO05D004881 3.5e-16 88.2 55 81.8
Nn7g36507 Nelumbo nucifera HOM05D000104 ORTHO05D004881 3.5e-16 88.2 55 81.8
CANSAT54G1548 Cannabis sativa HOM05D000104 ORTHO05D004881 4.6e-16 87.8 55 81.8
Peaxi162Scf00062g00086 Petunia axillaris HOM05D000104 ORTHO05D004881 4.6e-16 87.8 55 81.8
HPP92_006715 Vanilla planifolia HOM05D000104 ORTHO05D004881 4.6e-16 87.8 55 80.0
HPP92_006720 Vanilla planifolia HOM05D000104 ORTHO05D004881 4.6e-16 87.8 55 80.0
GSVIVG01037235001 Vitis vinifera HOM05D000104 ORTHO05D004881 4.6e-16 87.8 55 80.0
CDE08G1000 Ceratophyllum demersum HOM05D000104 ORTHO05D004881 6.0e-16 87.4 63 69.8
Ciclev10014019m.g Citrus clementina HOM05D000104 ORTHO05D004881 6.0e-16 87.4 55 80.0
Dinv08770 Davidia involucrata HOM05D000104 ORTHO05D004881 6.0e-16 87.4 55 80.0
PSO339G0098 Papaver somniferum HOM05D000104 ORTHO05D004881 6.0e-16 87.4 63 73.0
Glyma.02G281000 Glycine max HOM05D000104 ORTHO05D004881 7.8e-16 87.0 55 80.0
Gohir.A09G111200 Gossypium hirsutum HOM05D000104 ORTHO05D004881 7.8e-16 87.0 55 80.0
Gorai.013G252300 Gossypium raimondii HOM05D000104 ORTHO05D004881 7.8e-16 87.0 55 80.0
Medtr5g090090 Medicago truncatula HOM05D000104 ORTHO05D004881 7.8e-16 87.0 55 81.8
Hund07450 Selenicereus undatus HOM05D000104 ORTHO05D004881 7.8e-16 87.0 55 81.8
THA.LOC104826485 Tarenaya hassleriana HOM05D000104 ORTHO05D004881 1.0e-15 86.7 55 80.0
SGA_v2.0_scaffold3G01470 Striga asiatica HOM05D000104 ORTHO05D004881 1.3e-15 86.3 63 73.0
AagrBONN_evm.TU.Sc2ySwM_344.3208 Anthoceros agrestis HOM05D000104 ORTHO05D004881 1.7e-15 85.9 63 71.4
Aa31sc426G10 Aethionema arabicum HOM05D000104 ORTHO05D004881 2.3e-15 85.5 63 69.8
Ca_06225_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004881 2.3e-15 85.5 55 80.0
Dinv36192 Davidia involucrata HOM05D000104 ORTHO05D004881 2.3e-15 85.5 55 80.0
Phvul.008G199800 Phaseolus vulgaris HOM05D000104 ORTHO05D004881 2.3e-15 85.5 56 82.1
VMungo0647G0770 Vigna mungo HOM05D000104 ORTHO05D004881 2.3e-15 85.5 64 73.4
TAR633G1573 Trochodendron aralioides HOM05D000104 ORTHO05D004881 3.0e-15 85.1 55 80.0
ECA233G4577 Erigeron canadensis HOM05D000104 ORTHO05D004881 3.9e-15 84.7 64 71.9
AUR62039837 Chenopodium quinoa HOM05D000104 ORTHO05D004881 5.1e-15 84.3 55 78.2
Gorai.006G125500 Gossypium raimondii HOM05D000104 ORTHO05D004881 5.1e-15 84.3 55 78.2
Lalb_Chr04g0249101 Lupinus albus HOM05D000104 ORTHO05D004881 5.1e-15 84.3 64 73.4
ATR0721G152 Amborella trichopoda HOM05D000104 ORTHO05D004881 6.6e-15 84.0 55 81.8
Aqoxy2G00308 Aquilegia oxysepala HOM05D000104 ORTHO05D004881 6.6e-15 84.0 55 80.0
Ah.06g194420 Amaranthus hybridus HOM05D000104 ORTHO05D004881 1.1e-14 83.2 55 78.2
CDE09G0540 Ceratophyllum demersum HOM05D000104 ORTHO05D004881 1.1e-14 83.2 63 66.7
Lsat_1_v5_gn_4_146300 Lactuca sativa HOM05D000104 ORTHO05D004881 1.1e-14 83.2 64 68.8
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 1.5e-14 82.8 65 69.2
HanXRQChr12g0357371 Helianthus annuus HOM05D000104 ORTHO05D004881 1.5e-14 82.8 64 68.8
Lsat_1_v5_gn_2_38240 Lactuca sativa HOM05D000104 ORTHO05D004881 1.5e-14 82.8 64 68.8
Sc09g0000930 Simmondsia chinensis HOM05D000104 ORTHO05D004881 1.5e-14 82.8 55 76.4
Pp3c5_19940 Physcomitrium patens HOM05D000104 ORTHO05D004881 2.5e-14 82.0 55 74.5
SMO117G0029 Selaginella moellendorffii HOM05D000104 ORTHO05D004881 2.5e-14 82.0 55 74.5
Gohir.D09G107800 Gossypium hirsutum HOM05D000104 ORTHO05D004881 3.3e-14 81.6 55 78.2
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 4.3e-14 81.3 83 59.0
AL3G45270 Arabidopsis lyrata HOM05D000104 ORTHO05D004881 7.3e-14 80.5 63 66.7
Carub.0003s2790 Capsella rubella HOM05D000104 ORTHO05D004881 7.3e-14 80.5 63 66.7
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 7.3e-14 80.5 52 80.8
Pp3c6_10390 Physcomitrium patens HOM05D000104 ORTHO05D004881 1.2e-13 79.7 55 70.9
AT2G13370 Arabidopsis thaliana HOM05D000104 ORTHO05D004881 1.6e-13 79.3 63 66.7
A09p10390 Brassica napus HOM05D000104 ORTHO05D004881 1.6e-13 79.3 63 65.1
BraA09t36683Z Brassica rapa HOM05D000104 ORTHO05D004881 1.6e-13 79.3 63 65.1
Thhalv10022519m.g Eutrema salsugineum HOM05D000104 ORTHO05D004881 1.6e-13 79.3 63 65.1
HanXRQChr14g0433041 Helianthus annuus HOM05D000104 ORTHO05D004881 2.1e-13 79.0 64 65.6
Sp3g26880 Schrenkiella parvula HOM05D000104 ORTHO05D004881 2.8e-13 78.6 63 63.5
SHI27490 Sapria himalayana HOM05D000104 ORTHO05D004881 3.6e-13 78.2 55 74.5
BcaB02g11515 Brassica carinata HOM05D000104 ORTHO05D004881 4.7e-13 77.8 63 63.5
BcaC04g23082 Brassica carinata HOM05D000104 ORTHO05D004881 4.7e-13 77.8 63 63.5
C09p12330 Brassica napus HOM05D000104 ORTHO05D004881 4.7e-13 77.8 63 63.5
BolC9t54126H Brassica oleracea HOM05D000104 ORTHO05D004881 4.7e-13 77.8 63 63.5
CARHR105150 Cardamine hirsuta HOM05D000104 ORTHO05D004881 4.7e-13 77.8 63 65.1
MD11G1194800 Malus domestica HOM05D000104 ORTHO05D004881 8.1e-13 77.0 50 80.0
Mapoly0005s0060 Marchantia polymorpha HOM05D000104 ORTHO05D004881 4.0e-12 74.7 54 70.4
Oeu061292.1 Olea europaea HOM05D000104 ORTHO05D004881 7.1e-09 63.9 30 96.7
vmacro04008 Vaccinium macrocarpon HOM05D000104 ORTHO05D004881 4.6e-08 61.2 115 40.0
MD03G1168800 Malus domestica HOM05D000104 ORTHO05D004881 7.3e-06 53.9 89 42.7


User provided reference genes

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