Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C029574.2 Cucumis melo HOM05D001978 ORTHO05D003036 2.4e-145 518.8 266 100.0
MELO3C029961.2 Cucumis melo HOM05D001978 ORTHO05D006669 1.1e-20 104.8 108 59.3
MELO3C035543.2 Cucumis melo HOM05D007786 ORTHO05D009980 1.8e-15 87.4 67 71.6
ClCG10G012130 Citrullus lanatus HOM05D001978 ORTHO05D003036 5.2e-15 85.9 48 93.8
MELO3C024002.2 Cucumis melo HOM05D001978 ORTHO05D003036 5.2e-15 85.9 48 93.8
CsaV3_3G031890 Cucumis sativus L. HOM05D001978 ORTHO05D003036 5.2e-15 85.9 48 93.8
Sed0016255 Sechium edule HOM05D001978 ORTHO05D003036 5.2e-15 85.9 48 93.8
Sed0014499 Sechium edule HOM05D001978 ORTHO05D003036 1.5e-14 84.3 48 91.7
Duzib133G0356 Durio zibethinus HOM05D001978 ORTHO05D003036 2.2e-13 80.5 119 43.7
TWI73G0465 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 4.8e-13 79.3 56 73.2
CiPaw.14G004000 Carya illinoinensis HOM05D001978 ORTHO05D003036 8.2e-13 78.6 48 83.3
Ca_26319_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 8.2e-13 78.6 48 83.3
Ca_29948_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 8.2e-13 78.6 48 83.3
COL.COLO4_12328 Corchorus olitorius HOM05D001978 ORTHO05D003036 8.2e-13 78.6 48 83.3
Duzib138G1653 Durio zibethinus HOM05D001978 ORTHO05D003036 8.2e-13 78.6 48 83.3
Glyma.12G010300 Glycine max HOM05D001978 ORTHO05D003036 8.2e-13 78.6 48 83.3
Gohir.A08G141300 Gossypium hirsutum HOM05D001978 ORTHO05D003036 8.2e-13 78.6 48 83.3
Gohir.D08G162400 Gossypium hirsutum HOM05D001978 ORTHO05D003036 8.2e-13 78.6 48 83.3
Lj3g0007867 Lotus japonicus HOM05D001978 ORTHO05D003036 8.2e-13 78.6 48 83.3
Phvul.011G010400 Phaseolus vulgaris HOM05D001978 ORTHO05D003036 8.2e-13 78.6 48 83.3
Psat6g024720 Pisum sativum HOM05D001978 ORTHO05D003036 8.2e-13 78.6 48 83.3
TPR.G4596 Trifolium pratense HOM05D001978 ORTHO05D003036 8.2e-13 78.6 62 66.1
VMungo1127G0961 Vigna mungo HOM05D001978 ORTHO05D003036 8.2e-13 78.6 48 83.3
Cfa022633 Carpinus fangiana HOM05D001978 ORTHO05D003036 1.1e-12 78.2 48 83.3
Ciclev10030570m.g Citrus clementina HOM05D001978 ORTHO05D003036 1.1e-12 78.2 48 83.3
Haze_03128 Corylus avellana HOM05D001978 ORTHO05D003036 1.1e-12 78.2 48 83.3
Haze_03129 Corylus avellana HOM05D001978 ORTHO05D003036 1.1e-12 78.2 48 83.3
ECA234G3788 Erigeron canadensis HOM05D001978 ORTHO05D003036 1.1e-12 78.2 48 81.2
FAN10G1732 Fragaria x ananassa HOM05D001978 ORTHO05D003036 1.1e-12 78.2 48 81.2
HanXRQChr16g0524831 Helianthus annuus HOM05D001978 ORTHO05D003036 1.1e-12 78.2 48 81.2
Lsat_1_v5_gn_4_32040 Lactuca sativa HOM05D001978 ORTHO05D003036 1.1e-12 78.2 48 81.2
QL04p000034 Quercus lobata HOM05D001978 ORTHO05D003036 1.1e-12 78.2 48 81.2
FvH4_7g01850 Fragaria vesca HOM05D001978 ORTHO05D003036 1.4e-12 77.8 48 83.3
FAN03G2968 Fragaria x ananassa HOM05D001978 ORTHO05D003036 1.4e-12 77.8 48 83.3
FAN06G2210 Fragaria x ananassa HOM05D001978 ORTHO05D003036 1.4e-12 77.8 48 83.3
Lj9A642G52 Lonicera japonica HOM05D001978 ORTHO05D003036 1.8e-12 77.4 48 81.2
Medtr4g045577 Medicago truncatula HOM05D001978 ORTHO05D003036 1.8e-12 77.4 106 47.2
QL04p003183 Quercus lobata HOM05D001978 ORTHO05D003036 1.8e-12 77.4 48 81.2
QL06p019642 Quercus lobata HOM05D001978 ORTHO05D003036 1.8e-12 77.4 48 81.2
Rhsim01G0124800 Rhododendron simsii HOM05D001978 ORTHO05D003036 1.8e-12 77.4 78 56.4
Thecc.01G404200 Theobroma cacao HOM05D001978 ORTHO05D003036 1.8e-12 77.4 104 49.0
Atru.chr11.2543 Acer truncatum HOM05D001978 ORTHO05D003036 2.4e-12 77.0 48 81.2
arahy.Tifrunner.gnm1.ann1.18AW2L Arachis hypogaea HOM05D001978 ORTHO05D003036 2.4e-12 77.0 48 81.2
arahy.Tifrunner.gnm1.ann1.T8W0FC Arachis hypogaea HOM05D001978 ORTHO05D003036 2.4e-12 77.0 48 81.2
CSS0022031 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 2.4e-12 77.0 48 81.2
Dinv07425 Davidia involucrata HOM05D001978 ORTHO05D003036 2.4e-12 77.0 48 81.2
Glyma.09G226400 Glycine max HOM05D001978 ORTHO05D003036 2.4e-12 77.0 48 81.2
Gorai.004G168700 Gossypium raimondii HOM05D001978 ORTHO05D003036 2.4e-12 77.0 48 81.2
Hma1.2p1_0685F.1_g203310 Hydrangea macrophylla HOM05D001978 ORTHO05D003036 2.4e-12 77.0 48 81.2
Manes.07G011900 Manihot esculenta HOM05D001978 ORTHO05D003036 2.4e-12 77.0 48 81.2
Manes.10G135100 Manihot esculenta HOM05D001978 ORTHO05D003036 2.4e-12 77.0 48 81.2
Oeu014599.1 Olea europaea HOM05D001978 ORTHO05D003036 2.4e-12 77.0 48 81.2
Psat7g158440 Pisum sativum HOM05D001978 ORTHO05D003036 2.4e-12 77.0 108 49.1
QL04p010499 Quercus lobata HOM05D001978 ORTHO05D003036 2.4e-12 77.0 48 81.2
RcHm_v2.0_Chr1g0318481 Rosa chinensis HOM05D001978 ORTHO05D003036 2.4e-12 77.0 48 81.2
TWI53G0392 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 3.1e-12 76.6 48 79.2
MD07G1024900 Malus domestica HOM05D001978 ORTHO05D003036 4.1e-12 76.3 48 81.2
Potri.001G260900 Populus trichocarpa HOM05D001978 ORTHO05D003036 4.1e-12 76.3 48 81.2
Potri.009G055400 Populus trichocarpa HOM05D001978 ORTHO05D003036 4.1e-12 76.3 48 81.2
Sabra09G0040500 Salix brachista HOM05D001978 ORTHO05D003036 4.1e-12 76.3 48 81.2
Sc14g0004930 Simmondsia chinensis HOM05D001978 ORTHO05D003036 4.1e-12 76.3 48 79.2
Actinidia06286 Actinidia chinensis HOM05D001978 ORTHO05D003036 5.3e-12 75.9 48 77.1
Ah.16g100700 Amaranthus hybridus HOM05D001978 ORTHO05D003036 5.3e-12 75.9 80 55.0
MSTRG.20555 Avicennia marina HOM05D001978 ORTHO05D003036 5.3e-12 75.9 78 57.7
CAN.G909.18 Capsicum annuum HOM05D001978 ORTHO05D003036 5.3e-12 75.9 48 79.2
Lsat_1_v5_gn_1_101701 Lactuca sativa HOM05D001978 ORTHO05D003036 5.3e-12 75.9 48 79.2
Lj7C575G6 Lonicera japonica HOM05D001978 ORTHO05D003036 5.3e-12 75.9 48 79.2
Nitab4.5_0002888g0010 Nicotiana tabacum HOM05D001978 ORTHO05D003036 5.3e-12 75.9 48 79.2
Nitab4.5_0006695g0020 Nicotiana tabacum HOM05D001978 ORTHO05D003036 5.3e-12 75.9 48 79.2
Peaxi162Scf01108g00213 Petunia axillaris HOM05D001978 ORTHO05D003036 5.3e-12 75.9 48 79.2
Solyc01g088020.3 Solanum lycopersicum HOM05D001978 ORTHO05D003036 5.3e-12 75.9 48 79.2
Sopen01g034910 Solanum pennellii HOM05D001978 ORTHO05D003036 5.3e-12 75.9 48 79.2
CSS0034960 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 7.0e-12 75.5 48 79.2
FAN01G0983 Fragaria x ananassa HOM05D001978 ORTHO05D003036 7.0e-12 75.5 48 79.2
MD02G1300000 Malus domestica HOM05D001978 ORTHO05D003036 7.0e-12 75.5 48 79.2
Prupe.2G024600 Prunus persica HOM05D001978 ORTHO05D003036 7.0e-12 75.5 48 79.2
Hund16631 Selenicereus undatus HOM05D001978 ORTHO05D003036 7.0e-12 75.5 48 79.2
SGA_v2.0_scaffold119G32768 Striga asiatica HOM05D001978 ORTHO05D003036 7.0e-12 75.5 78 57.7
SGA_v2.0_scaffold4G02473 Striga asiatica HOM05D001978 ORTHO05D003036 7.0e-12 75.5 78 57.7
TWI09G1049 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 7.0e-12 75.5 48 79.2
ECA236G3334 Erigeron canadensis HOM05D001978 ORTHO05D003036 9.1e-12 75.1 48 75.0
Gohir.D12G103000 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.2e-11 74.7 48 77.1
Gorai.008G112200 Gossypium raimondii HOM05D001978 ORTHO05D003036 1.2e-11 74.7 48 77.1
Oeu006547.2 Olea europaea HOM05D001978 ORTHO05D003036 1.2e-11 74.7 48 79.2
MSTRG.17003 Avicennia marina HOM05D001978 ORTHO05D003036 1.6e-11 74.3 48 77.1
COL.COLO4_03678 Corchorus olitorius HOM05D001978 ORTHO05D003036 1.6e-11 74.3 94 46.8
Duzib268G1826 Durio zibethinus HOM05D001978 ORTHO05D003036 1.6e-11 74.3 47 80.9
Migut.B01256 Erythranthe guttata HOM05D001978 ORTHO05D003036 1.6e-11 74.3 78 56.4
HanXRQChr01g0015661 Helianthus annuus HOM05D001978 ORTHO05D003036 1.6e-11 74.3 48 75.0
PGR031G1837 Punica granatum HOM05D001978 ORTHO05D003036 1.6e-11 74.3 48 77.1
Sabra16G0159500 Salix brachista HOM05D001978 ORTHO05D003036 1.6e-11 74.3 48 79.2
DCAR_031813 Daucus carota HOM05D001978 ORTHO05D003036 2.0e-11 73.9 46 78.3
vmacro21140 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 2.0e-11 73.9 78 56.4
CANSAT80G0138 Cannabis sativa HOM05D001978 ORTHO05D003036 2.6e-11 73.6 48 77.1
Cpa.g.sc125.59 Carica papaya HOM05D001978 ORTHO05D003036 2.6e-11 73.6 46 80.4
Gohir.A08G055600 Gossypium hirsutum HOM05D001978 ORTHO05D003036 2.6e-11 73.6 48 77.1
Gohir.A11G073600 Gossypium hirsutum HOM05D001978 ORTHO05D003036 2.6e-11 73.6 48 77.1
Gohir.D08G064900 Gossypium hirsutum HOM05D001978 ORTHO05D003036 2.6e-11 73.6 48 77.1
Gorai.004G067200 Gossypium raimondii HOM05D001978 ORTHO05D003036 2.6e-11 73.6 48 77.1
EL10Ac2g04382 Beta vulgaris HOM05D001978 ORTHO05D003036 3.5e-11 73.2 48 77.1
Eucgr.G03281 Eucalyptus grandis HOM05D001978 ORTHO05D003036 3.5e-11 73.2 48 75.0
TAR369G0424 Trochodendron aralioides HOM05D001978 ORTHO05D003036 3.5e-11 73.2 70 60.0
Ah.10g038540 Amaranthus hybridus HOM05D001978 ORTHO05D003036 4.5e-11 72.8 47 78.7
Gohir.A12G100200 Gossypium hirsutum HOM05D001978 ORTHO05D003036 4.5e-11 72.8 48 75.0
HanXRQChr06g0183381 Helianthus annuus HOM05D001978 ORTHO05D003036 4.5e-11 72.8 48 75.0
Lalb_Chr03g0024131 Lupinus albus HOM05D001978 ORTHO05D003036 4.5e-11 72.8 48 79.2
SalBow5G1268 Salvia bowleyana HOM05D001978 ORTHO05D003036 4.5e-11 72.8 48 77.1
SalBow5G4104 Salvia bowleyana HOM05D001978 ORTHO05D003036 4.5e-11 72.8 48 77.1
CiPaw.13G008500 Carya illinoinensis HOM05D001978 ORTHO05D003036 1.3e-10 71.2 48 77.1
Gorai.007G083600 Gossypium raimondii HOM05D001978 ORTHO05D003036 1.3e-10 71.2 48 77.1
Lalb_Chr01g0000521 Lupinus albus HOM05D001978 ORTHO05D003036 1.3e-10 71.2 48 77.1
Lalb_Chr19g0140221 Lupinus albus HOM05D001978 ORTHO05D003036 1.3e-10 71.2 48 77.1
Aa31LG10G17320 Aethionema arabicum HOM05D001978 ORTHO05D003036 1.7e-10 70.9 48 72.9
Carub.0005s3007 Capsella rubella HOM05D001978 ORTHO05D003036 1.7e-10 70.9 48 72.9
CARHR291510 Cardamine hirsuta HOM05D001978 ORTHO05D003036 1.7e-10 70.9 48 72.9
Thhalv10005758m.g Eutrema salsugineum HOM05D001978 ORTHO05D003036 1.7e-10 70.9 48 72.9
GSVIVG01001441001 Vitis vinifera HOM05D001978 ORTHO05D003036 1.7e-10 70.9 48 77.1
ATR0057G059 Amborella trichopoda HOM05D001978 ORTHO05D003036 2.9e-10 70.1 78 52.6
Actinidia21535 Actinidia chinensis HOM05D001978 ORTHO05D003036 3.8e-10 69.7 48 70.8
AL5G46320 Arabidopsis lyrata HOM05D001978 ORTHO05D003036 3.8e-10 69.7 48 70.8
AT3G63460 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 3.8e-10 69.7 48 70.8
BcaB02g08058 Brassica carinata HOM05D001978 ORTHO05D003036 3.8e-10 69.7 48 70.8
BcaC07g40813 Brassica carinata HOM05D001978 ORTHO05D003036 3.8e-10 69.7 48 70.8
A09p55130 Brassica napus HOM05D001978 ORTHO05D003036 3.8e-10 69.7 48 70.8
A09p55140 Brassica napus HOM05D001978 ORTHO05D003036 3.8e-10 69.7 48 70.8
C04p29860 Brassica napus HOM05D001978 ORTHO05D003036 3.8e-10 69.7 48 70.8
C08p38070 Brassica napus HOM05D001978 ORTHO05D003036 3.8e-10 69.7 48 70.8
BolC4t24517H Brassica oleracea HOM05D001978 ORTHO05D003036 3.8e-10 69.7 48 70.8
BolC8t51381H Brassica oleracea HOM05D001978 ORTHO05D003036 3.8e-10 69.7 48 70.8
BraA09t40920Z Brassica rapa HOM05D001978 ORTHO05D003036 3.8e-10 69.7 48 70.8
BraA09t40921Z Brassica rapa HOM05D001978 ORTHO05D003036 3.8e-10 69.7 48 70.8
Cc00_g06050 Coffea canephora HOM05D001978 ORTHO05D003036 3.8e-10 69.7 48 70.8
Sp5g00090 Schrenkiella parvula HOM05D001978 ORTHO05D003036 3.8e-10 69.7 48 70.8
AUR62023105 Chenopodium quinoa HOM05D001978 ORTHO05D003036 5.0e-10 69.3 46 76.1
Sc11g0009020 Simmondsia chinensis HOM05D001978 ORTHO05D003036 5.0e-10 69.3 48 75.0
Gohir.D11G078201 Gossypium hirsutum HOM05D001978 ORTHO05D003036 8.5e-10 68.6 48 75.0
SGA_v2.0_scaffold5G02944 Striga asiatica HOM05D001978 ORTHO05D003036 8.5e-10 68.6 48 68.8
C06p28640 Brassica napus HOM05D001978 ORTHO05D003036 1.1e-09 68.2 48 68.8
BolC6t38032H Brassica oleracea HOM05D001978 ORTHO05D003036 1.1e-09 68.2 48 68.8
Nn7g36348 Nelumbo nucifera HOM05D001978 ORTHO05D003036 1.1e-09 68.2 48 72.9
SalBow6G2677 Salvia bowleyana HOM05D001978 ORTHO05D003036 1.1e-09 68.2 48 75.0
Nn2g15171 Nelumbo nucifera HOM05D001978 ORTHO05D003036 1.5e-09 67.8 48 70.8
PSO675G4117 Papaver somniferum HOM05D001978 ORTHO05D003036 1.5e-09 67.8 48 70.8
PSO732G0135 Papaver somniferum HOM05D001978 ORTHO05D003036 1.5e-09 67.8 48 70.8
Zm00001eb110650 Zea mays HOM05D001978 ORTHO05D003036 1.5e-09 67.8 48 70.8
ECA248G1610 Erigeron canadensis HOM05D001978 ORTHO05D003036 1.9e-09 67.4 48 68.8
TPR.G1017 Trifolium pratense HOM05D001978 ORTHO05D003036 1.9e-09 67.4 40 87.5
COL.COLO4_11232 Corchorus olitorius HOM05D001978 ORTHO05D018189 3.2e-09 66.6 48 72.9
MBI19_g16674_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 4.2e-09 66.2 47 70.2
Rhsim07G0059400 Rhododendron simsii HOM05D001978 ORTHO05D003036 4.2e-09 66.2 48 70.8
THA.LOC104823030 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 4.2e-09 66.2 48 68.8
Ah.03g145440 Amaranthus hybridus HOM05D001978 ORTHO05D003036 5.5e-09 65.9 49 67.3
A07p26260 Brassica napus HOM05D001978 ORTHO05D003036 7.2e-09 65.5 48 66.7
BraA07t30269Z Brassica rapa HOM05D001978 ORTHO05D003036 7.2e-09 65.5 48 66.7
Zm00001eb329590 Zea mays HOM05D001978 ORTHO05D003036 7.2e-09 65.5 48 70.8
TAR633G0096 Trochodendron aralioides HOM05D001978 ORTHO05D003036 9.4e-09 65.1 78 51.3
vmacro13704 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 9.4e-09 65.1 48 68.8
Aqoxy2G04178 Aquilegia oxysepala HOM05D001978 ORTHO05D003036 1.6e-08 64.3 107 37.4
BcaC08g45262 Brassica carinata HOM05D001978 ORTHO05D003036 2.1e-08 63.9 48 64.6
Os07g0657200 Oryza sativa ssp. japonica HOM05D001978 ORTHO05D003036 2.1e-08 63.9 48 68.8
vmacro10496 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 2.1e-08 63.9 48 70.8
HPP92_001385 Vanilla planifolia HOM05D001978 ORTHO05D003036 2.1e-08 63.9 48 66.7
MBI13_g11939_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 2.7e-08 63.5 48 68.8
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 4.7e-08 62.8 35 91.4
TPR.G3047 Trifolium pratense HOM05D001978 ORTHO05D003036 4.7e-08 62.8 108 43.5
THA.LOC104801971 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 1.0e-07 61.6 48 62.5
TPR.G8350 Trifolium pratense HOM05D001978 ORTHO05D003036 1.0e-07 61.6 38 78.9
CBR_g4546 Chara braunii HOM05D001978 ORTHO05D003036 2.3e-07 60.5 78 46.2
A08p30170 Brassica napus HOM05D001978 ORTHO05D003036 3.0e-07 60.1 48 66.7
BraA08t34951Z Brassica rapa HOM05D001978 ORTHO05D003036 3.0e-07 60.1 48 66.7
CARHR040110 Cardamine hirsuta HOM05D001978 ORTHO05D003036 3.0e-07 60.1 77 48.1
BcaB03g12953 Brassica carinata HOM05D001978 ORTHO05D003036 4.0e-07 59.7 78 48.7
BcaC07g38951 Brassica carinata HOM05D001978 ORTHO05D003036 6.7e-07 58.9 48 64.6
C08p18950 Brassica napus HOM05D001978 ORTHO05D003036 6.7e-07 58.9 48 64.6
BolC8t49521H Brassica oleracea HOM05D001978 ORTHO05D003036 6.7e-07 58.9 48 64.6
TPR.G3035 Trifolium pratense HOM05D001978 ORTHO05D003036 6.7e-07 58.9 38 71.1
TPR.G35927 Trifolium pratense HOM05D001978 ORTHO05D003036 6.7e-07 58.9 34 88.2
Carub.0001s1846 Capsella rubella HOM05D001978 ORTHO05D003036 8.8e-07 58.5 47 63.8
CDE02G0774 Ceratophyllum demersum HOM05D001978 ORTHO05D003036 8.8e-07 58.5 48 58.3
CDE09G0202 Ceratophyllum demersum HOM05D001978 ORTHO05D003036 8.8e-07 58.5 48 58.3
AL1G31350 Arabidopsis lyrata HOM05D001978 ORTHO05D003036 2.0e-06 57.4 52 57.7
AT1G18830 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 2.0e-06 57.4 78 46.2
DCAR_022370 Daucus carota HOM05D001978 ORTHO05D003036 3.3e-06 56.6 45 66.7
Pp3c2_17710 Physcomitrium patens HOM05D001978 ORTHO05D003036 3.3e-06 56.6 48 60.4
TPR.G10129 Trifolium pratense HOM05D001978 ORTHO05D003036 4.4e-06 56.2 39 71.8
Rhsim02G0201000 Rhododendron simsii HOM05D001978 ORTHO05D003036 7.5e-06 55.5 48 64.6
Pp3c1_29660 Physcomitrium patens HOM05D001978 ORTHO05D003036 9.7e-06 55.1 48 58.3


User provided reference genes

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