Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 1.4e-62 242.7 112 100.0
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 1.4e-62 242.7 112 100.0
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 1.5e-61 239.2 112 98.2
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 1.3e-57 226.1 112 91.1
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 1.8e-54 215.7 112 88.4
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 1.3e-47 193.0 112 72.3
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 6.3e-47 190.7 112 71.4
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 3.4e-45 184.9 112 71.4
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 1.4e-43 179.5 110 71.8
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 1.9e-43 179.1 112 68.8
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 3.2e-43 178.3 110 70.0
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 3.2e-43 178.3 113 69.0
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 5.5e-43 177.6 112 67.9
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 5.5e-43 177.6 112 67.9
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 5.5e-43 177.6 115 71.3
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 7.2e-43 177.2 110 68.2
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 7.2e-43 177.2 113 68.1
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 7.2e-43 177.2 112 67.0
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 9.3e-43 176.8 112 68.8
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 9.3e-43 176.8 112 68.8
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 1.2e-42 176.4 112 67.0
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 2.1e-42 175.6 113 67.3
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 2.1e-42 175.6 113 67.3
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 3.6e-42 174.9 113 69.0
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 3.6e-42 174.9 113 67.3
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 3.6e-42 174.9 112 69.6
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 3.6e-42 174.9 112 69.6
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 1.0e-41 173.3 112 66.1
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 2.3e-41 172.2 113 65.5
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 3.9e-41 171.4 113 66.4
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 6.7e-41 170.6 113 65.5
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 6.7e-41 170.6 113 66.4
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 8.7e-41 170.2 113 65.5
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.5e-40 169.5 113 62.8
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.5e-40 169.5 113 62.8
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.5e-40 169.5 113 62.8
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.5e-40 169.5 113 62.8
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 2.5e-40 168.7 112 66.1
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 4.3e-40 167.9 97 73.2
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 5.7e-40 167.5 112 64.3
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 7.4e-40 167.2 113 64.6
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 1.1e-38 163.3 112 60.7
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 3.1e-38 161.8 112 60.7
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 3.1e-38 161.8 112 60.7
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 4.1e-38 161.4 112 58.9
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 4.1e-38 161.4 110 63.6
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 5.3e-38 161.0 112 59.8
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 6.9e-38 160.6 113 64.6
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 9.1e-38 160.2 108 64.8
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 2.6e-37 158.7 112 58.9
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 4.5e-37 157.9 113 63.7
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 1.3e-36 156.4 113 60.2
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 2.9e-36 155.2 110 60.9
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 1.1e-35 153.3 112 56.2
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 1.4e-35 152.9 95 71.6
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 2.5e-35 152.1 110 59.1
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 2.5e-35 152.1 108 61.1
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 3.2e-35 151.8 113 62.8
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 9.4e-35 150.2 113 61.9
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 4.7e-34 147.9 108 60.2
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 7.9e-34 147.1 102 57.8
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 1.0e-33 146.7 108 58.3
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.0e-33 146.7 108 58.3
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.0e-33 146.7 108 58.3
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.0e-33 146.7 108 58.3
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.0e-33 146.7 108 58.3
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.0e-33 146.7 108 58.3
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 1.0e-33 146.7 108 58.3
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 8.8e-33 143.7 113 57.5
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 1.1e-32 143.3 112 57.1
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 9.7e-32 140.2 110 56.4
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.3e-31 139.8 112 57.1
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 1.7e-31 139.4 81 71.6
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 2.8e-31 138.7 113 61.1
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 6.3e-31 137.5 112 55.4
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 8.2e-31 137.1 112 55.4
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.4e-30 136.3 112 54.5
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 1.4e-30 136.3 113 57.5
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 1.4e-30 136.3 113 54.9
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 4.1e-30 134.8 112 54.5
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 2.0e-29 132.5 113 52.2
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 2.6e-29 132.1 114 52.6
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 3.4e-29 131.7 113 54.0
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 3.4e-29 131.7 104 60.6
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 1.7e-28 129.4 116 50.9
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 2.9e-28 128.6 112 57.1
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 3.8e-28 128.3 112 50.0
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 6.5e-28 127.5 112 50.0
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 6.5e-28 127.5 112 50.0
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 6.5e-28 127.5 112 50.0
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 6.5e-28 127.5 112 50.0
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 6.5e-28 127.5 112 50.0
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 6.5e-28 127.5 112 50.0
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 6.5e-28 127.5 112 50.0
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 6.5e-28 127.5 112 50.0
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 6.5e-28 127.5 113 53.1
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 6.5e-28 127.5 113 53.1
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 6.5e-28 127.5 113 53.1
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 8.5e-28 127.1 112 50.0
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 8.5e-28 127.1 115 50.4
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 8.5e-28 127.1 112 50.9
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 1.1e-27 126.7 111 52.3
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 1.1e-27 126.7 113 53.1
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 1.1e-27 126.7 113 52.2
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 4.2e-27 124.8 68 76.5
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 4.2e-27 124.8 112 49.1
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 5.5e-27 124.4 112 49.1
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 5.5e-27 124.4 113 54.9
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 7.2e-27 124.0 113 54.0
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 2.7e-26 122.1 113 53.1
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 8.0e-26 120.6 75 72.0
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 6.7e-25 117.5 111 49.5
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 1.1e-24 116.7 113 51.3
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 1.1e-24 116.7 86 53.5
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 3.3e-24 115.2 139 45.3
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 9.7e-24 113.6 112 44.6
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 1.1e-22 110.2 109 45.9
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 1.2e-21 106.7 70 65.7
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 1.2e-21 106.7 86 60.5
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 7.7e-21 104.0 113 45.1
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 2.9e-20 102.1 98 46.9
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 6.5e-20 100.9 83 49.4
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 9.4e-19 97.1 111 41.4
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 1.4e-17 93.2 73 53.4
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 1.8e-17 92.8 68 61.8
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 1.7e-15 86.3 68 61.8
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 2.2e-15 85.9 55 65.5
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 7.0e-14 80.9 71 47.9
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 9.1e-14 80.5 113 38.1
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 2.2e-12 75.9 71 47.9
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 6.8e-09 64.3 95 37.9
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 4.8e-07 58.2 102 32.4
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 2.4e-06 55.8 115 26.1
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 4.1e-06 55.1 115 29.6
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 4.1e-06 55.1 121 30.6
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 9.1e-06 53.9 117 30.8
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 9.1e-06 53.9 107 30.8
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 9.1e-06 53.9 107 30.8


User provided reference genes

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