Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 0.0e+00 1155.2 565 100.0
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 0.0e+00 1146.0 565 99.1
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 0.0e+00 1124.8 565 97.3
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 0.0e+00 1111.3 601 92.3
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 0.0e+00 1102.4 563 94.7
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 0.0e+00 1099.7 563 95.0
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 0.0e+00 1098.2 565 95.4
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 0.0e+00 1094.3 563 94.5
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 0.0e+00 1094.3 563 94.5
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 0.0e+00 1094.0 565 94.3
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 0.0e+00 1093.2 564 94.5
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1093.2 565 94.5
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 0.0e+00 1092.8 563 94.3
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1092.0 563 94.3
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 0.0e+00 1092.0 563 94.0
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1089.7 568 93.8
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1089.7 568 93.8
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1089.3 563 94.0
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1088.9 566 94.0
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 0.0e+00 1088.2 568 93.7
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 0.0e+00 1088.2 560 94.8
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 0.0e+00 1087.8 565 93.5
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1087.4 568 93.5
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1087.4 563 94.0
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1087.0 563 94.1
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1085.9 564 93.6
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1085.9 565 94.2
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 0.0e+00 1085.1 566 93.8
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 0.0e+00 1083.9 563 93.1
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 0.0e+00 1083.2 563 93.8
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 0.0e+00 1083.2 564 93.4
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1083.2 564 93.4
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 0.0e+00 1080.9 563 92.9
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 0.0e+00 1080.9 563 93.3
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 0.0e+00 1080.1 563 93.6
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 0.0e+00 1078.9 563 93.1
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 0.0e+00 1078.5 563 93.1
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 0.0e+00 1078.2 563 93.1
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1077.4 563 93.1
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 0.0e+00 1077.4 563 93.1
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1077.4 562 92.7
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 0.0e+00 1077.0 560 93.8
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 0.0e+00 1077.0 559 93.6
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 0.0e+00 1075.8 560 93.9
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 0.0e+00 1075.5 563 92.9
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 3.9e-312 1074.7 557 93.5
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 3.9e-312 1074.7 563 92.9
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 3.9e-312 1073.9 595 89.1
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 3.9e-312 1073.5 563 93.1
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 7.7e-312 1073.2 563 92.5
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 7.7e-312 1073.2 563 92.4
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 7.7e-312 1073.2 553 94.0
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 7.7e-312 1072.8 563 93.3
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 7.7e-312 1072.8 563 92.7
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 1.9e-311 1071.6 564 92.0
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 2.7e-311 1071.2 563 92.2
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 5.8e-311 1070.1 562 92.3
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 1.7e-310 1068.5 564 92.0
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 2.2e-310 1068.1 563 92.5
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 2.9e-310 1067.8 562 92.0
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 6.5e-310 1066.6 564 91.8
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 1.1e-309 1065.8 564 91.5
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 2.5e-309 1064.7 578 90.1
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 2.5e-309 1064.7 563 91.8
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 4.2e-309 1063.9 565 91.9
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 2.1e-308 1061.6 564 90.6
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 2.1e-308 1061.6 566 90.6
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 3.6e-308 1060.8 565 90.4
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 4.7e-308 1060.4 564 90.4
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 4.7e-308 1060.4 564 90.4
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 4.7e-308 1060.4 620 85.6
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 6.1e-308 1060.1 565 91.5
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 8.0e-308 1059.7 564 90.4
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.0e-307 1059.3 564 90.2
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 1.0e-307 1059.3 565 90.6
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 5.2e-307 1057.0 551 93.5
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 1.5e-306 1055.4 564 89.9
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 1.5e-306 1055.4 564 89.9
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 2.0e-306 1055.0 563 90.4
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 4.4e-306 1053.9 559 89.8
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 2.2e-305 1051.6 563 90.6
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 6.3e-305 1050.0 565 90.1
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 1.6e-303 1045.4 593 87.4
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 2.0e-303 1045.0 565 89.9
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 5.9e-303 1043.5 563 90.8
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 2.2e-302 1041.6 561 91.1
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 8.8e-299 1029.6 521 95.4
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 2.6e-298 1028.1 551 88.9
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 3.5e-295 1017.7 577 87.7
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 2.2e-294 1015.0 557 87.4
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 2.7e-292 1008.1 565 88.7
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.7e-292 1007.3 553 86.8
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.7e-292 1007.3 553 86.8
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 1.3e-289 999.2 542 87.8
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 1.5e-282 975.7 521 90.2
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 5.0e-278 960.7 497 94.0
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 6.2e-276 953.7 487 93.0
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 4.9e-265 917.5 541 81.3
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 2.7e-263 911.8 454 95.6
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 6.0e-263 910.6 564 80.9
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 3.5e-247 858.2 543 77.2
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.1e-237 826.6 563 74.8
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 4.8e-236 821.2 422 95.7
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 6.4e-233 810.8 565 74.7
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 2.4e-232 808.9 406 95.3
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 7.9e-231 803.9 530 78.5
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.4e-227 793.1 521 77.7
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 3.4e-226 788.5 521 77.4
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 3.9e-222 775.0 563 71.2
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.3e-220 770.0 507 74.8
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 9.0e-219 763.8 562 71.2
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 2.2e-217 759.2 390 94.6
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.9e-217 758.8 563 71.9
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 3.8e-209 731.9 558 67.6
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 7.7e-194 681.0 507 70.0
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 7.0e-187 657.9 329 94.8
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 1.4e-166 590.5 313 88.8
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 3.6e-159 565.8 512 61.5
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 7.1e-147 525.0 556 55.2
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 3.1e-142 509.6 262 92.7
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.3e-137 494.2 462 57.8
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.5e-136 490.7 301 82.7
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 2.6e-133 479.9 258 91.5
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 6.6e-129 465.3 565 50.4
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 2.5e-128 463.4 509 52.5
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 7.3e-128 461.8 293 78.8
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 4.8e-127 459.1 385 64.7
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.0e-121 439.9 499 49.9
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 3.9e-121 439.5 563 47.6
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.7e-119 433.0 237 91.1
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 4.6e-114 416.0 353 62.0
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 5.3e-110 402.5 196 96.4
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 7.2e-99 365.5 246 76.4
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-98 363.6 300 67.0
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.7e-93 345.5 183 87.4
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.2e-92 344.0 269 65.8
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.8e-92 343.2 167 97.6
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 5.0e-92 342.8 321 61.7
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 6.5e-92 342.4 214 77.1
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 2.0e-85 320.9 154 96.8
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 5.5e-83 312.8 160 90.6
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 2.8e-79 300.4 156 91.0
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 1.0e-73 282.0 177 83.1
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 2.2e-68 264.2 159 81.8
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 5.7e-64 249.6 157 80.3
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 1.6e-53 214.9 123 87.8
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 1.0e-49 202.2 105 93.3
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 1.4e-49 201.8 125 80.0
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 4.1e-46 190.3 113 85.8
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 1.7e-44 184.9 280 43.6
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.3e-44 184.5 133 70.7
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 4.7e-34 150.2 98 79.6
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 8.9e-33 146.0 147 59.2
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 1.0e-28 132.5 75 89.3
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 9.5e-27 125.9 73 87.7
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 3.6e-26 124.0 86 76.7
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 5.4e-22 110.2 55 96.4
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 4.3e-19 100.5 58 84.5
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 9.0e-17 92.8 63 73.0
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-16 92.0 47 91.5
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 2.0e-16 91.7 49 91.8
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 7.6e-16 89.7 60 80.0
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 4.9e-15 87.0 52 80.8
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 4.9e-15 87.0 53 83.0
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 6.4e-15 86.7 43 88.4
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 3.2e-14 84.3 88 59.1
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 7.1e-14 83.2 59 69.5
MD06G1156600 Malus domestica HOM05D004180 ORTHO05D020683 8.1e-10 69.7 51 74.5


User provided reference genes

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