Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 4.0e-284 980.7 479 100.0
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 4.9e-274 947.2 479 96.0
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 1.1e-241 839.7 479 87.1
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 2.1e-229 798.9 479 83.7
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 4.7e-192 674.9 477 70.4
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 3.0e-191 672.2 478 68.2
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 1.2e-190 670.2 476 70.0
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 1.7e-189 666.4 473 68.9
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.8e-188 662.9 473 69.8
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 1.8e-188 662.9 473 69.8
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 1.0e-186 657.1 470 69.1
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 5.0e-186 654.8 473 67.4
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 2.5e-185 652.5 472 67.4
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 5.5e-185 651.4 476 67.0
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 9.4e-185 650.6 483 67.1
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 4.7e-184 648.3 476 68.1
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 6.1e-184 647.9 474 68.6
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 6.1e-184 647.9 480 66.9
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 1.0e-183 647.1 478 66.7
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 5.2e-183 644.8 482 66.0
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 2.6e-182 642.5 475 67.2
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 5.7e-182 641.3 476 66.6
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 1.7e-181 639.8 475 66.7
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 2.2e-181 639.4 478 66.9
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 6.3e-181 637.9 475 66.1
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 2.4e-180 636.0 484 66.5
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 3.1e-180 635.6 473 65.8
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 1.0e-178 630.6 481 65.7
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 1.7e-178 629.8 478 65.7
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 1.7e-178 629.8 480 66.5
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 1.7e-178 629.8 478 65.9
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 4.2e-177 625.2 470 65.1
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 5.5e-177 624.8 468 64.5
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 1.2e-176 623.6 472 65.5
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 4.7e-176 621.7 471 65.8
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 1.4e-175 620.2 472 64.8
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 4.0e-175 618.6 468 63.9
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 4.0e-175 618.6 475 64.6
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 5.2e-175 618.2 474 64.6
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 2.6e-174 615.9 452 67.0
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 2.6e-174 615.9 477 64.6
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 3.4e-174 615.5 474 63.9
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 4.4e-174 615.1 469 65.5
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 1.3e-173 613.6 470 62.8
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 1.3e-173 613.6 472 64.4
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 4.9e-173 611.7 470 63.8
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 6.3e-173 611.3 455 65.7
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 1.4e-172 610.1 472 62.9
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 3.2e-172 609.0 490 61.8
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 2.0e-171 606.3 473 64.7
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 2.7e-171 605.9 465 64.1
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 1.0e-170 604.0 483 61.1
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 1.0e-170 604.0 442 66.7
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 1.3e-170 603.6 471 62.8
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 1.7e-170 603.2 480 62.3
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 5.0e-170 601.7 480 62.3
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 8.6e-170 600.9 484 61.0
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 1.5e-169 600.1 446 64.6
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 2.5e-169 599.4 480 61.5
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 3.3e-169 599.0 476 64.3
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 5.6e-169 598.2 471 62.8
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 9.5e-169 597.4 485 62.3
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 2.1e-168 596.3 470 62.3
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 3.6e-168 595.5 448 64.3
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 1.8e-167 593.2 483 60.2
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 3.1e-167 592.4 448 64.1
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 1.5e-166 590.1 489 60.1
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 9.8e-166 587.4 448 63.6
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 1.7e-165 586.6 488 60.5
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 1.7e-165 586.6 450 63.3
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 3.7e-165 585.5 450 63.1
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 7.8e-163 577.8 484 62.0
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 2.8e-160 569.3 498 59.4
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 1.1e-159 567.4 479 60.8
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 2.2e-157 559.7 426 63.8
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 2.7e-155 552.7 425 62.8
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 1.0e-154 550.8 475 61.3
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 1.3e-154 550.4 492 59.3
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 1.6e-152 543.5 448 60.0
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 8.1e-152 541.2 481 58.0
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 6.4e-149 531.6 375 68.3
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 3.2e-148 529.3 437 60.0
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 1.7e-141 506.9 385 62.9
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 7.8e-139 498.0 380 65.8
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 2.2e-133 479.9 496 50.4
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 2.4e-127 459.9 338 64.2
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 3.1e-127 459.5 319 70.2
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 1.1e-121 441.0 316 65.5
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 8.1e-120 434.9 420 49.8
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 3.8e-109 399.4 472 44.9
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 1.6e-104 384.0 425 46.8
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 1.7e-96 357.5 384 46.9
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 4.1e-95 352.8 255 67.5
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 5.0e-93 345.9 232 72.8
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 1.9e-92 344.0 274 64.2
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 3.6e-91 339.7 365 49.6
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 3.6e-91 339.7 392 44.1
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 4.7e-91 339.3 436 42.2
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 6.7e-90 335.5 259 66.0
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 1.6e-86 324.3 392 43.9
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 2.2e-85 320.5 299 54.5
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 2.3e-82 310.5 319 52.7
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 2.2e-80 303.9 239 60.7
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 8.5e-77 292.0 457 37.9
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 2.2e-69 267.3 243 56.4
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 9.4e-68 261.9 210 57.6
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 6.8e-66 255.8 202 64.9
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 4.0e-58 229.9 233 53.6
SEGI_28812 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 4.4e-57 226.5 238 51.3
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 2.4e-55 220.7 184 61.4
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 1.9e-44 184.5 122 69.7
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 2.8e-43 180.6 117 70.9
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 3.2e-39 167.2 116 70.7
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 1.8e-26 124.8 116 53.4
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 5.2e-26 123.2 108 61.1
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 7.1e-23 112.8 100 57.0
MD06G1152300 Malus domestica HOM05D006543 ORTHO05D008308 5.8e-09 66.6 66 48.5
MD06G1157100 Malus domestica HOM05D006543 ORTHO05D008308 2.2e-08 64.7 69 52.2
MD06G1154400 Malus domestica HOM05D006543 ORTHO05D008308 8.4e-08 62.8 66 47.0
BcaNung00695 Brassica carinata HOM05D000342 ORTHO05D000217 1.6e-06 58.5 31 83.9
Cfa009975 Carpinus fangiana HOM05D006543 ORTHO05D008308 1.6e-06 58.5 44 61.4


User provided reference genes

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