Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 0.0e+00 1632.8 821 100.0
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 0.0e+00 1562.7 821 95.4
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 0.0e+00 1416.0 819 88.4
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 0.0e+00 1386.7 820 85.4
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 1.1e-311 1073.2 824 67.6
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 9.4e-310 1066.6 819 66.4
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 1.8e-308 1062.4 827 66.0
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 1.8e-308 1062.4 820 66.2
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 2.3e-308 1062.0 819 67.0
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 4.0e-308 1061.2 821 64.6
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 1.2e-307 1059.7 827 66.0
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 1.2e-307 1059.7 822 66.4
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 2.0e-307 1058.9 820 66.7
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 4.4e-307 1057.7 824 65.8
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.2e-306 1055.4 819 66.1
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 2.8e-306 1055.0 822 65.6
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 4.9e-306 1054.3 827 65.9
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.1e-305 1053.1 819 65.7
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 4.1e-305 1051.2 823 64.2
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 1.2e-304 1049.7 822 65.8
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 5.9e-304 1047.3 821 65.0
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 1.6e-301 1039.3 822 65.2
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 8.0e-301 1036.9 819 65.4
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 1.1e-297 1026.5 821 64.2
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 2.0e-296 1022.3 822 63.9
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 4.6e-296 1021.1 830 63.1
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 4.3e-294 1014.6 822 62.9
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 3.1e-292 1008.4 822 63.7
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 2.6e-291 1005.4 844 62.0
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 9.8e-291 1003.4 820 61.6
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.2e-289 998.4 819 63.4
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 1.2e-283 979.9 825 63.5
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 2.0e-283 979.2 827 60.9
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 3.5e-280 968.4 804 61.7
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 4.6e-280 968.0 824 61.0
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 1.3e-279 966.5 809 62.2
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 3.0e-279 965.3 824 60.8
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 1.2e-277 959.9 828 62.1
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 1.8e-276 956.1 811 60.9
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 2.4e-276 955.7 825 59.6
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 5.8e-275 951.0 883 58.4
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 1.1e-273 946.8 811 60.4
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 5.4e-273 944.5 802 60.7
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 1.2e-272 943.3 809 61.2
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 6.0e-272 941.0 805 59.8
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 7.8e-272 940.6 736 65.5
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 3.0e-271 938.7 834 57.9
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 4.3e-270 934.9 849 58.0
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 5.6e-270 934.5 840 58.5
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 1.6e-269 932.9 803 60.4
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 6.2e-269 931.0 819 59.2
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 2.6e-267 925.6 819 58.9
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 2.6e-267 925.6 828 58.8
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 1.7e-266 922.9 806 60.7
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 4.9e-266 921.4 821 58.6
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 1.1e-265 920.2 832 58.8
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 2.4e-265 919.1 828 58.6
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.6e-264 916.4 828 59.3
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 2.1e-264 916.0 818 59.2
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 6.0e-264 914.4 821 58.1
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 1.7e-263 912.9 839 56.9
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.7e-263 912.9 807 60.6
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 1.9e-262 909.4 824 57.8
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 8.1e-261 904.0 847 56.6
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 5.3e-260 901.4 825 58.3
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 4.5e-259 898.3 819 57.3
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 8.4e-258 894.0 819 56.5
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 1.4e-257 893.3 819 56.9
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 1.4e-257 893.3 819 56.5
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 9.3e-257 890.6 819 56.4
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 2.7e-256 889.0 793 57.4
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 3.5e-256 888.6 768 58.9
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 5.6e-254 881.3 844 55.6
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 3.7e-253 878.6 831 55.8
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 8.1e-253 877.5 742 62.0
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 3.1e-252 875.5 841 55.1
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 4.0e-252 875.2 838 55.7
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 3.2e-249 865.5 828 57.0
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 3.2e-249 865.5 820 55.1
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 6.0e-248 861.3 835 55.3
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 3.2e-241 839.0 819 54.9
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 1.0e-239 833.9 822 54.7
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 2.0e-235 819.7 883 51.8
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 7.7e-235 817.8 838 53.3
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 2.9e-234 815.8 868 54.3
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.1e-232 809.7 623 66.6
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.1e-232 809.7 623 66.6
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 4.3e-230 802.0 646 63.9
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 4.1e-228 795.4 720 56.8
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 7.2e-225 784.6 624 65.1
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 7.7e-219 764.6 782 53.6
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 2.0e-211 740.0 624 61.7
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 3.6e-208 729.2 597 62.0
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 5.7e-206 721.8 625 60.0
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 6.1e-192 675.2 722 49.7
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 1.2e-182 644.4 817 43.3
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 9.8e-182 641.3 770 46.9
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 1.6e-176 624.0 728 47.9
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 2.1e-176 623.6 814 45.8
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 1.7e-165 587.4 549 57.0
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 4.9e-149 532.7 468 57.3
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 1.1e-148 531.6 409 66.0
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 9.6e-145 518.5 487 56.3
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.6e-139 501.1 556 50.4
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 2.3e-130 470.7 399 61.4
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 1.5e-126 458.0 781 36.9
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 1.4e-124 451.4 337 66.5
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 1.5e-118 431.4 784 36.4
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.2e-115 421.8 349 63.9
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.8e-114 417.9 346 63.9
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.1e-113 415.2 399 54.9
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 1.6e-107 394.8 791 34.0
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 3.6e-91 340.5 464 41.2
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 2.5e-84 317.8 487 42.1
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 6.1e-83 313.2 262 59.9
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 4.1e-79 300.4 246 59.3
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 3.8e-77 293.9 860 29.4
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 5.7e-73 280.0 296 56.1
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 5.6e-68 263.5 384 45.1
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 8.0e-67 259.6 195 65.6
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.7e-64 250.8 183 67.8
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 3.0e-61 241.1 314 43.6
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 3.4e-57 227.6 327 39.1
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 6.6e-53 213.4 232 47.0
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 2.2e-48 198.4 235 56.2
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.4e-47 195.7 144 67.4
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 1.1e-44 186.0 181 54.1
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.8e-42 178.7 162 59.3
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 6.4e-40 170.2 246 41.1
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.7e-38 164.9 173 52.0
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.1e-36 159.5 173 50.3
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.4e-34 152.5 155 56.1
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.1e-31 142.9 214 35.5
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 6.2e-27 127.1 158 50.6
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 2.5e-20 105.1 800 22.1
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 4.8e-19 100.9 114 51.8
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 1.9e-07 62.4 79 50.6
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 1.2e-06 59.7 80 46.2
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.6e-06 59.3 43 62.8


User provided reference genes

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