Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 0.0e+00 1951.0 1006 100.0
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 0.0e+00 1891.3 1006 96.2
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 0.0e+00 1775.0 1032 89.5
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 0.0e+00 1644.8 1043 80.3
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 0.0e+00 1565.1 1008 80.7
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 0.0e+00 1228.4 1015 64.2
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 0.0e+00 1203.0 1122 60.8
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 0.0e+00 1201.8 1073 61.8
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1201.0 1016 62.9
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 0.0e+00 1199.1 1066 62.8
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 0.0e+00 1192.6 1023 63.7
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1192.2 1016 63.3
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 0.0e+00 1191.4 1077 61.4
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 0.0e+00 1177.5 1015 62.5
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 0.0e+00 1177.5 1024 63.3
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 0.0e+00 1171.8 1018 62.3
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 0.0e+00 1170.2 1026 63.3
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 0.0e+00 1168.3 1018 61.9
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 0.0e+00 1161.7 1081 59.9
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 0.0e+00 1161.0 1018 61.7
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 0.0e+00 1155.2 1094 59.3
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 0.0e+00 1143.3 1054 60.1
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 0.0e+00 1139.8 1016 61.6
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 0.0e+00 1137.5 1038 60.9
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 0.0e+00 1135.2 1038 60.8
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 0.0e+00 1133.2 1052 60.6
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 0.0e+00 1132.9 1018 61.2
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 0.0e+00 1129.4 1015 61.8
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 0.0e+00 1128.2 1088 58.6
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 0.0e+00 1127.1 1014 61.8
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 0.0e+00 1120.9 1106 57.6
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 0.0e+00 1120.5 963 64.6
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 0.0e+00 1118.6 1020 61.0
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 0.0e+00 1117.1 1051 58.5
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 0.0e+00 1115.9 1021 61.4
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 0.0e+00 1114.8 1063 58.6
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 0.0e+00 1114.0 1020 60.9
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 0.0e+00 1111.3 1025 59.6
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 0.0e+00 1109.0 1082 57.9
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 0.0e+00 1107.8 1033 60.0
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 0.0e+00 1105.9 1086 57.3
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 0.0e+00 1104.4 1048 58.4
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 0.0e+00 1104.0 1047 58.5
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 0.0e+00 1094.0 1014 60.5
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 0.0e+00 1091.3 1012 59.8
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 0.0e+00 1079.3 1038 58.9
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 2.3e-310 1068.9 911 64.3
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 1.3e-308 1063.1 1023 59.4
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 3.5e-306 1055.0 1075 55.8
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 1.2e-301 1040.0 1070 57.1
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 1.5e-301 1039.6 1095 54.5
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 1.9e-299 1032.7 1020 58.9
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 3.2e-299 1031.9 1023 57.6
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 4.6e-298 1028.1 1005 59.0
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 4.7e-295 1018.1 1030 56.2
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.5e-293 1013.1 1028 56.0
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 2.6e-293 1012.3 1020 58.2
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 4.9e-292 1008.1 1014 57.5
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 6.0e-290 1001.1 1033 55.3
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 6.0e-290 1001.1 1018 56.3
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 3.4e-285 985.3 1014 56.6
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 3.5e-282 975.3 1003 55.5
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 7.8e-282 974.2 1014 54.3
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 1.6e-279 966.5 1028 54.3
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 5.8e-277 958.0 1020 54.5
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 3.8e-276 955.3 1073 51.9
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 6.4e-276 954.5 1019 53.2
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 6.4e-276 954.5 1019 53.2
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 1.1e-275 953.7 1000 55.3
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 1.0e-273 947.2 1022 53.1
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.0e-273 947.2 1055 52.6
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 1.7e-273 946.4 776 65.5
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 1.5e-272 943.3 1053 52.3
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 1.9e-272 943.0 1024 53.2
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 1.3e-271 940.3 924 56.5
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 2.0e-269 932.9 1050 53.2
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 2.4e-267 926.0 997 54.3
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 2.1e-266 922.9 1023 52.9
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 2.8e-263 912.5 884 58.8
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 4.8e-263 911.8 1021 51.8
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 1.5e-261 906.7 1157 47.9
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 5.8e-261 904.8 1014 53.6
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.4e-259 900.2 947 55.5
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 2.8e-255 885.9 1036 50.8
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 2.8e-255 885.9 1036 50.8
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 2.7e-250 869.4 1023 51.4
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 4.3e-248 862.1 1043 49.3
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 9.7e-248 860.9 1025 49.8
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 2.2e-247 859.8 1025 49.9
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 2.5e-243 846.3 1163 46.3
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 1.2e-242 844.0 1021 49.7
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 1.1e-240 837.4 971 51.7
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 2.5e-240 836.3 1021 49.2
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 2.5e-240 836.3 1021 49.2
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 3.3e-240 835.9 1030 49.8
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 9.1e-238 827.8 708 63.6
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 3.4e-237 825.9 1013 50.0
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 4.5e-237 825.5 838 55.7
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 1.2e-234 817.4 1117 47.4
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 4.7e-234 815.5 1034 48.9
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 4.7e-234 815.5 1034 48.9
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 6.7e-233 811.6 1037 49.2
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 9.7e-232 807.7 1018 48.9
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 1.2e-229 800.8 977 49.7
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 3.8e-228 795.8 595 68.6
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 3.7e-223 779.2 873 53.2
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 7.7e-221 771.5 617 67.1
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 1.6e-210 737.3 838 51.0
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 2.4e-206 723.4 692 59.1
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 3.4e-200 703.0 525 69.7
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 1.9e-190 670.6 842 48.7
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 9.2e-190 668.3 853 48.3
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 1.2e-189 667.9 960 44.8
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 9.8e-184 648.3 848 48.0
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 7.8e-181 638.6 827 48.6
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 2.2e-175 620.5 870 45.3
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 4.6e-173 612.8 1075 39.7
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 3.6e-162 576.6 428 69.6
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 8.4e-159 565.5 922 43.8
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 6.2e-154 549.3 944 40.4
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.2e-149 535.0 365 72.1
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.2e-149 535.0 367 72.8
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 1.2e-144 518.5 1067 36.7
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 1.0e-143 515.4 822 42.7
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 3.9e-140 503.4 495 58.6
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 1.7e-119 434.9 726 42.7
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 3.6e-117 427.2 354 63.0
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 1.0e-116 425.6 348 64.9
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 3.8e-111 407.1 333 64.9
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 6.5e-103 379.8 562 44.5
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 5.4e-89 333.6 379 51.5
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 7.8e-88 329.7 455 45.1
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 4.7e-77 293.9 330 56.1
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.2e-69 269.2 540 39.6
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.2e-69 269.2 540 39.6
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 2.1e-69 268.5 376 43.9
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 6.8e-68 263.5 261 55.6
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 8.9e-68 263.1 255 55.7
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 4.6e-64 250.8 378 44.4
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 3.6e-61 241.1 297 44.4
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 4.0e-52 211.1 279 47.7
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 5.8e-51 207.2 157 66.2
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 2.3e-47 195.3 182 58.2
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 1.1e-46 193.0 592 29.4
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 2.1e-45 188.7 133 67.7
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 6.9e-44 183.7 152 57.9
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 9.9e-43 179.9 113 78.8
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.4e-41 176.0 168 57.7
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 9.3e-41 173.3 175 53.7
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 2.7e-40 171.8 144 66.7
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 1.3e-37 162.9 288 36.5
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 7.6e-35 153.7 460 33.0
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 7.6e-35 153.7 132 61.4
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 1.4e-33 149.4 396 33.8
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 5.3e-28 131.0 85 76.5
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 3.4e-27 128.3 104 59.6
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 1.6e-24 119.4 75 74.7
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 1.0e-23 116.7 75 73.3
Glyma.14G115250 Glycine max HOM05D000283 ORTHO05D212723 2.2e-18 99.0 64 81.2
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 3.2e-17 95.1 71 59.2
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 6.7e-15 87.4 73 54.8
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 8.7e-15 87.0 50 80.0
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 2.5e-14 85.5 159 36.5
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 7.4e-14 84.0 50 76.0
Lalb_Chr02g0143861 Lupinus albus HOM05D000283 ORTHO05D005391 7.4e-14 84.0 106 44.3
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 5.3e-12 77.8 102 50.0
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 1.5e-11 76.3 105 44.8
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 2.0e-11 75.9 52 61.5
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 3.8e-10 71.6 47 61.7
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 5.0e-10 71.2 57 54.4
Psat1g094640 Pisum sativum HOM05D000467 ORTHO05D000379 1.4e-09 69.7 58 60.3
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 5.5e-09 67.8 57 61.4
Ca_24050_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 1.8e-07 62.8 276 27.2
Gohir.A03G091950 Gossypium hirsutum HOM05D000283 ORTHO05D217903 5.1e-07 61.2 50 58.0
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 1.5e-06 59.7 49 53.1


User provided reference genes

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