Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 8.7e-125 450.3 222 100.0
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 3.9e-117 424.9 227 94.7
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 2.9e-104 382.1 225 83.6
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 2.9e-88 328.9 227 71.4
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 9.4e-71 270.8 215 60.5
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 6.8e-69 264.6 219 58.9
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.1e-66 257.3 208 60.1
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 4.1e-66 255.4 215 59.1
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.1e-66 255.4 208 59.6
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 5.9e-65 251.5 233 56.7
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 1.3e-64 250.4 208 58.7
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 1.3e-64 250.4 208 58.2
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 1.3e-64 250.4 202 58.4
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 2.2e-64 249.6 215 57.7
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 3.8e-64 248.8 222 55.4
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 4.2e-63 245.4 208 57.2
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 5.5e-63 245.0 221 53.8
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 7.2e-63 244.6 214 56.5
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 9.5e-63 244.2 217 53.9
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 1.6e-62 243.4 208 58.2
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 2.1e-62 243.0 228 55.7
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 3.6e-62 242.3 223 52.9
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 3.6e-62 242.3 208 56.2
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 6.1e-62 241.5 241 52.3
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 8.0e-62 241.1 217 53.5
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.0e-61 240.7 211 57.8
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 1.8e-61 240.0 210 55.2
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 5.2e-61 238.4 223 54.3
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 6.8e-61 238.0 208 55.8
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.5e-60 236.9 232 54.3
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.5e-60 236.9 232 54.3
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 2.0e-60 236.5 215 55.8
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 2.6e-60 236.1 215 52.1
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 2.6e-60 236.1 227 54.2
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 4.4e-60 235.3 227 53.7
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 4.4e-60 235.3 208 55.3
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 5.7e-60 235.0 220 52.3
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 5.7e-60 235.0 208 53.8
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 1.3e-59 233.8 232 53.9
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 1.7e-59 233.4 212 57.1
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 1.7e-59 233.4 232 53.0
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 1.7e-59 233.4 225 53.3
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 4.9e-59 231.9 208 53.8
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 4.9e-59 231.9 227 52.9
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 6.3e-59 231.5 232 52.6
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.1e-58 230.7 208 54.3
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 1.1e-58 230.7 211 55.9
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 1.8e-58 229.9 220 52.3
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 3.1e-58 229.2 208 54.3
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 4.1e-58 228.8 230 52.2
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 4.1e-58 228.8 208 54.3
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 7.0e-58 228.0 223 52.0
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 1.2e-57 227.3 224 52.2
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.6e-57 226.9 208 53.8
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 1.6e-57 226.9 219 53.4
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 4.5e-57 225.3 194 57.2
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 1.7e-56 223.4 233 50.6
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 6.6e-56 221.5 209 49.8
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 1.1e-55 220.7 208 49.0
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 1.1e-55 220.7 182 57.1
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 4.3e-55 218.8 220 48.2
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 4.3e-55 218.8 220 50.0
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 7.3e-55 218.0 208 47.1
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 9.5e-55 217.6 220 50.0
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 9.5e-55 217.6 220 50.0
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 9.5e-55 217.6 233 49.8
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 1.2e-54 217.2 219 48.9
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 2.8e-54 216.1 220 48.6
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 4.7e-54 215.3 239 50.2
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 8.0e-54 214.5 225 47.6
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.0e-53 214.2 242 47.9
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.0e-53 214.2 242 47.9
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 1.0e-53 214.2 208 51.0
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 3.0e-53 212.6 216 47.7
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 3.0e-53 212.6 191 52.9
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 3.0e-53 212.6 235 50.2
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 4.0e-53 212.2 220 47.7
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 6.8e-53 211.5 203 51.7
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 6.8e-53 211.5 213 51.2
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 8.9e-53 211.1 165 60.0
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 1.2e-52 210.7 210 52.9
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 1.5e-52 210.3 228 48.2
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 2.6e-52 209.5 204 53.4
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 3.4e-52 209.1 217 51.2
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 1.3e-51 207.2 193 52.3
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.9e-51 205.3 217 50.7
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 3.2e-50 202.6 249 42.6
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 9.2e-50 201.1 191 47.6
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 9.2e-50 201.1 208 48.6
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 1.6e-49 200.3 208 48.1
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 2.3e-48 196.4 207 49.8
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 8.6e-48 194.5 221 49.8
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 1.5e-47 193.7 151 59.6
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 7.3e-47 191.4 238 45.8
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 7.3e-47 191.4 182 53.8
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 9.5e-47 191.0 208 45.2
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 1.2e-46 190.7 209 48.8
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 1.2e-46 190.7 168 53.6
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 1.2e-46 190.7 208 47.1
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 1.0e-45 187.6 259 37.5
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 3.1e-45 186.0 221 41.2
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 4.0e-45 185.7 156 57.7
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 6.8e-45 184.9 208 42.3
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 8.9e-45 184.5 161 54.7
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 3.4e-44 182.6 208 46.6
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 4.1e-42 175.6 134 64.9
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 1.0e-40 171.0 209 40.7
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 1.1e-37 161.0 126 59.5
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 4.4e-36 155.6 212 38.7
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 5.8e-36 155.2 208 34.1
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 2.9e-35 152.9 209 37.3
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 1.1e-34 151.0 128 54.7
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 1.6e-33 147.1 118 55.1
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 2.1e-33 146.7 124 58.1
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 4.6e-33 145.6 209 38.3
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 3.9e-32 142.5 98 65.3
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 6.2e-30 135.2 101 65.3
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 6.2e-30 135.2 104 62.5
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 8.9e-29 131.3 135 44.4
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 1.2e-28 131.0 98 58.2
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 2.6e-28 129.8 96 62.5
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 9.9e-28 127.9 145 46.9
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 2.9e-27 126.3 190 40.0
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 7.1e-26 121.7 145 46.9
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.5e-25 119.4 98 59.2
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 6.0e-25 118.6 70 77.1
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 1.3e-24 117.5 138 42.0
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 3.6e-22 109.4 115 47.0
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.1e-22 108.2 109 52.3
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-19 100.9 74 64.9
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 3.8e-19 99.4 68 69.1
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.4e-19 98.2 70 58.6
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 2.8e-14 83.2 63 60.3
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 2.4e-13 80.1 107 43.0
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 2.4e-13 80.1 101 36.6
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 9.0e-13 78.2 95 43.2
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 3.4e-12 76.3 155 31.0
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 2.9e-11 73.2 77 48.1
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 4.9e-11 72.4 117 36.8
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 2.4e-10 70.1 75 42.7
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 2.1e-09 67.0 109 38.5
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 6.7e-08 62.0 77 45.5
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 8.7e-08 61.6 77 45.5
Haze_27325 Corylus avellana HOM05D004044 ORTHO05D004841 1.1e-07 61.2 135 28.9
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 1.5e-07 60.8 77 41.6
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 5.6e-07 58.9 49 51.0
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 9.6e-07 58.2 59 50.8
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-06 57.8 77 42.9
Aqoxy3G01073 Aquilegia oxysepala HOM05D002720 ORTHO05D002901 6.2e-06 55.5 119 26.1
unitig_899.g14887 Utricularia gibba HOM05D002720 ORTHO05D002901 8.1e-06 55.1 129 27.9


User provided reference genes

Program Settings