Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 6.8e-240 833.6 416 100.0
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 1.3e-217 759.6 388 97.9
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 2.0e-207 725.7 387 93.8
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 1.5e-191 672.9 388 87.1
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 1.5e-186 656.4 387 86.8
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 3.6e-180 635.2 347 88.8
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 4.7e-180 634.8 399 80.5
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 6.7e-179 630.9 406 78.8
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 4.4e-178 628.2 377 84.1
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 7.4e-178 627.5 377 84.1
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 2.2e-177 625.9 388 81.4
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 2.8e-177 625.5 381 83.2
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 1.1e-176 623.6 385 81.6
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.4e-176 623.2 391 81.8
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 5.9e-175 617.8 393 79.9
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 1.0e-174 617.1 335 89.3
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 2.9e-174 615.5 380 80.8
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 2.9e-174 615.5 411 77.9
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 5.0e-174 614.8 411 77.1
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 1.9e-173 612.8 371 80.3
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 4.2e-173 611.7 380 80.5
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 5.5e-173 611.3 389 79.4
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 9.4e-173 610.5 372 81.2
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 3.6e-172 608.6 389 79.7
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 6.1e-172 607.8 403 76.9
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 8.0e-172 607.4 353 84.7
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 1.0e-171 607.1 386 80.1
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.4e-171 606.7 373 80.7
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 2.3e-171 605.9 396 77.0
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 6.7e-171 604.4 397 78.3
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 1.1e-170 603.6 385 80.0
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 2.0e-170 602.8 342 86.8
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 2.0e-170 602.8 380 79.7
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 2.6e-170 602.4 342 86.0
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 3.3e-170 602.1 373 79.9
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 4.4e-170 601.7 336 85.7
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 7.5e-170 600.9 425 74.1
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 7.5e-170 600.9 366 80.9
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 7.5e-170 600.9 384 78.6
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 6.3e-169 597.8 377 78.8
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 6.3e-169 597.8 375 78.9
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 1.1e-168 597.0 355 82.8
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 1.8e-168 596.3 347 83.6
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 2.4e-168 595.9 335 84.8
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 2.4e-168 595.9 338 85.5
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 5.3e-168 594.7 395 76.5
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 5.3e-168 594.7 398 76.1
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 1.2e-167 593.6 378 78.8
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.2e-167 593.6 383 79.4
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 1.6e-167 593.2 373 78.3
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 2.0e-167 592.8 406 76.4
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 2.0e-167 592.8 385 79.2
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 3.5e-167 592.0 349 82.5
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 3.5e-167 592.0 371 79.8
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 4.5e-167 591.7 374 79.1
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 4.5e-167 591.7 374 79.1
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 1.0e-166 590.5 371 79.5
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 1.3e-166 590.1 400 73.5
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 2.9e-166 589.0 355 82.0
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 3.8e-166 588.6 392 78.8
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 3.8e-166 588.6 379 78.4
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 6.5e-166 587.8 382 77.2
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 2.5e-165 585.9 408 73.0
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 3.2e-165 585.5 390 76.2
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 3.2e-165 585.5 393 77.4
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 8.0e-164 580.9 392 75.5
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 2.3e-163 579.3 381 78.0
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 1.5e-162 576.6 349 82.5
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 2.0e-162 576.2 358 79.3
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 3.4e-162 575.5 412 73.3
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 5.7e-162 574.7 367 79.3
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 2.2e-161 572.8 371 77.9
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 6.3e-161 571.2 361 79.2
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 1.1e-160 570.5 352 79.8
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 4.1e-160 568.5 381 76.6
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 9.1e-160 567.4 376 76.9
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 2.0e-159 566.2 342 80.1
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 3.5e-159 565.5 381 75.9
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 4.5e-159 565.1 379 77.0
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 5.9e-159 564.7 448 66.1
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 1.7e-158 563.1 377 76.7
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 1.7e-158 563.1 341 81.2
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 6.5e-158 561.2 386 75.9
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 1.9e-157 559.7 346 80.1
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 2.5e-157 559.3 381 76.1
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 4.7e-156 555.1 365 75.3
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 4.7e-156 555.1 392 71.7
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 4.7e-156 555.1 407 71.7
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 4.7e-156 555.1 381 74.5
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 3.0e-155 552.4 335 80.3
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 8.8e-155 550.8 378 74.6
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 2.0e-154 549.7 377 72.4
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 4.4e-154 548.5 333 80.8
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 2.2e-153 546.2 341 78.6
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 2.2e-153 546.2 370 74.3
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 2.8e-153 545.8 396 72.5
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 4.5e-151 538.5 357 75.6
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 7.7e-151 537.7 332 76.2
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.3e-149 532.3 305 83.9
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.3e-149 532.3 305 83.9
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 1.1e-141 507.3 446 60.1
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.9e-141 506.5 530 54.9
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 5.8e-138 495.0 343 68.8
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 9.8e-138 494.2 562 52.5
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.1e-136 490.7 335 71.0
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 3.5e-135 485.7 352 68.5
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 7.8e-135 484.6 390 66.4
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 1.0e-134 484.2 523 53.5
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 2.0e-122 443.4 334 67.1
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 3.9e-118 429.1 381 58.3
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 3.2e-112 409.5 407 57.0
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.0e-110 404.4 209 90.9
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 3.1e-99 366.3 355 52.1
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 1.5e-98 364.0 384 50.3
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 4.2e-96 355.9 184 91.3
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 2.7e-79 300.1 298 51.3
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 2.0e-58 230.7 122 88.5
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 2.6e-58 230.3 114 94.7
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 8.5e-57 225.3 341 37.5
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 2.2e-49 200.7 181 60.8
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 3.8e-33 146.7 103 68.9
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 6.1e-31 139.4 69 88.4
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 3.0e-30 137.1 89 74.2
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 5.7e-29 132.9 189 46.0
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.3e-28 131.7 73 90.4
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 8.3e-28 129.0 85 74.1
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 1.2e-26 125.2 84 72.6
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 1.8e-22 111.3 80 68.8
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 1.9e-19 101.3 53 84.9
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 2.1e-15 87.8 43 88.4
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 4.1e-11 73.6 43 81.4
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 3.5e-10 70.5 71 56.3
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 5.1e-09 66.6 38 73.7
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 4.3e-08 63.5 67 50.7
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 4.3e-08 63.5 39 74.4


User provided reference genes

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