Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 3.7e-158 561.6 304 100.0
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 8.2e-158 560.5 304 99.7
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 4.0e-157 558.1 304 99.3
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 4.0e-157 558.1 304 99.3
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 4.5e-156 554.7 304 99.0
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 7.1e-154 547.4 304 97.4
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 6.5e-139 497.7 308 85.7
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 2.1e-137 492.7 308 86.4
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 7.9e-137 490.7 302 87.7
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 2.3e-136 489.2 304 85.2
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 3.0e-136 488.8 306 83.7
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 1.5e-135 486.5 304 85.9
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 3.3e-135 485.3 303 85.1
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 9.7e-135 483.8 304 85.5
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 1.3e-134 483.4 305 81.6
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 2.2e-134 482.6 304 83.6
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 3.7e-134 481.9 306 83.3
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 4.8e-134 481.5 306 83.3
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 8.2e-134 480.7 305 83.9
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 1.4e-133 479.9 304 83.6
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.8e-133 479.6 304 85.2
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.8e-133 479.6 304 85.2
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 1.8e-133 479.6 303 84.5
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 4.1e-133 478.4 304 84.5
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 9.1e-133 477.2 304 82.2
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 9.1e-133 477.2 306 84.3
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 9.1e-133 477.2 304 83.9
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 1.2e-132 476.9 304 83.9
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 1.5e-132 476.5 305 81.3
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.0e-132 476.1 304 85.2
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.6e-132 475.7 305 82.3
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 5.9e-132 474.6 305 82.3
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 4.2e-130 468.4 305 84.3
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 5.5e-130 468.0 304 80.9
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 7.2e-130 467.6 305 79.3
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 7.2e-130 467.6 305 82.6
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 9.4e-130 467.2 305 83.6
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 9.4e-130 467.2 305 83.6
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 9.4e-130 467.2 305 83.0
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 1.2e-129 466.8 304 80.6
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.2e-129 466.8 304 83.6
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 2.1e-129 466.1 298 82.6
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 2.1e-129 466.1 306 84.0
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 2.7e-129 465.7 303 83.8
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 2.7e-129 465.7 303 81.8
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 3.6e-129 465.3 306 82.4
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 3.6e-129 465.3 306 82.4
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 3.6e-129 465.3 306 82.4
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 3.6e-129 465.3 304 83.2
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 6.1e-129 464.5 304 83.6
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 1.0e-128 463.8 305 82.6
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.0e-128 463.8 305 83.3
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.0e-128 462.2 307 82.4
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 5.2e-128 461.5 305 80.0
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 5.2e-128 461.5 306 81.7
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 6.7e-128 461.1 304 81.2
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 1.1e-127 460.3 304 78.9
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 2.0e-127 459.5 304 79.6
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.6e-127 459.1 302 81.1
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 2.6e-127 459.1 304 81.9
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 5.7e-127 458.0 304 81.9
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 5.7e-127 458.0 304 79.3
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 1.3e-126 456.8 304 81.2
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 1.3e-126 456.8 304 78.3
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 1.3e-126 456.8 304 81.6
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 1.3e-126 456.8 304 78.9
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 1.3e-126 456.8 304 78.9
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 2.2e-126 456.1 304 81.6
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 2.8e-126 455.7 304 78.9
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 2.8e-126 455.7 304 78.9
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 3.7e-126 455.3 302 78.8
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 6.3e-126 454.5 304 78.6
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 1.1e-125 453.8 304 79.3
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 1.4e-125 453.4 304 78.6
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 2.4e-125 452.6 304 77.6
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 3.1e-125 452.2 304 81.2
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 3.1e-125 452.2 304 78.9
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 5.3e-125 451.4 302 77.8
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 7.0e-125 451.1 305 78.0
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 9.1e-125 450.7 304 81.2
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 1.7e-123 446.4 303 76.6
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 2.2e-123 446.0 289 80.3
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.9e-122 443.0 304 77.6
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 2.5e-122 442.6 305 75.7
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 4.2e-122 441.8 304 78.9
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 7.2e-122 441.0 304 76.3
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 1.6e-121 439.9 304 77.3
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 2.7e-121 439.1 304 79.6
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.0e-120 437.2 298 77.5
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.8e-120 436.4 304 75.3
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 1.8e-120 436.4 304 75.3
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 8.8e-120 434.1 304 78.6
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 2.0e-119 433.0 304 78.0
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 4.4e-119 431.8 304 76.0
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 1.3e-118 430.3 304 77.6
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 3.7e-118 428.7 304 76.6
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 6.3e-118 427.9 313 73.5
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 1.1e-117 427.2 304 75.7
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 2.4e-117 426.0 304 76.3
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 2.4e-117 426.0 304 75.0
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 2.4e-117 426.0 304 76.3
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 2.4e-117 426.0 304 76.3
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 3.1e-117 425.6 304 76.3
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 5.3e-117 424.9 305 78.0
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 5.3e-117 424.9 304 73.0
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.2e-116 423.7 304 73.0
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 1.6e-116 423.3 304 74.0
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 4.5e-116 421.8 304 76.3
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 3.8e-115 418.7 301 77.4
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 8.8e-112 407.5 312 72.4
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.3e-110 403.7 282 79.1
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 9.5e-106 387.5 304 67.4
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 2.1e-105 386.3 306 69.0
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 4.1e-101 372.1 305 68.9
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 4.5e-100 368.6 293 71.7
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 1.5e-98 363.6 304 63.2
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 3.5e-92 342.4 325 61.2
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 4.3e-90 335.5 305 59.3
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 1.2e-89 334.0 195 82.1
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.2e-85 319.3 254 70.9
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 5.6e-82 308.5 300 56.7
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 4.7e-81 305.4 254 66.5
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 8.1e-81 304.7 304 58.9
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 8.9e-80 301.2 305 54.4
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 5.4e-77 292.0 304 57.9
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 4.6e-68 262.3 134 96.3
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 1.0e-67 261.2 303 50.5
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.5e-63 247.3 198 70.2
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.7e-62 243.8 271 55.4
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 4.3e-58 229.2 193 68.4
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 9.6e-58 228.0 204 65.7
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 6.7e-51 205.3 195 61.5
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 4.0e-48 196.1 169 70.4
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 9.0e-48 194.9 296 45.6
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 9.0e-48 194.9 195 59.5
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 1.2e-47 194.5 311 43.7
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 3.0e-43 179.9 230 46.5
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 3.7e-41 172.9 199 48.7
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 2.4e-40 170.2 111 78.4
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 4.2e-37 159.5 104 73.1
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 7.4e-34 148.7 173 49.7
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 7.7e-31 138.7 262 44.7
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 2.9e-30 136.7 102 65.7
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 6.5e-22 109.0 77 70.1
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 3.2e-21 106.7 77 67.5
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 7.2e-21 105.5 304 33.9
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 7.2e-21 105.5 149 52.3
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 1.6e-20 104.4 304 33.6
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 1.6e-20 104.4 61 77.0
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 1.1e-18 98.2 71 67.6
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 1.3e-17 94.7 118 59.3
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 2.2e-17 94.0 117 56.4
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 2.6e-15 87.0 99 58.6
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 1.4e-11 74.7 98 53.1
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 3.0e-11 73.6 62 71.0
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 1.1e-10 71.6 146 43.2


User provided reference genes

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