Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C022813.2 Cucumis melo HOM05D006110 ORTHO05D007774 0.0e+00 1225.3 615 100.0
CsaV3_5G023770 Cucumis sativus L. HOM05D006110 ORTHO05D007774 0.0e+00 1209.1 615 98.5
Sed0024249 Sechium edule HOM05D006110 ORTHO05D007774 0.0e+00 1129.8 608 91.8
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 9.3e-302 1039.6 609 84.4
CiPaw.06G056300 Carya illinoinensis HOM05D006110 ORTHO05D007774 2.0e-296 1021.9 610 83.0
QL04p021435 Quercus lobata HOM05D006110 ORTHO05D007774 4.5e-296 1020.8 612 83.2
QL07p029279 Quercus lobata HOM05D006110 ORTHO05D007774 4.5e-296 1020.8 612 83.2
Manes.04G156400 Manihot esculenta HOM05D006110 ORTHO05D007774 9.3e-294 1013.1 610 82.1
Eucgr.E03954 Eucalyptus grandis HOM05D006110 ORTHO05D007774 1.2e-288 996.1 610 81.1
Atru.chr12.1309 Acer truncatum HOM05D006110 ORTHO05D007774 2.2e-287 991.9 610 81.1
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 7.1e-286 986.9 609 80.5
Prupe.7G006200 Prunus persica HOM05D006110 ORTHO05D007774 2.1e-285 985.3 610 79.8
Ciclev10000631m.g Citrus clementina HOM05D006110 ORTHO05D007774 1.0e-284 983.0 610 79.8
COL.COLO4_06638 Corchorus olitorius HOM05D006110 ORTHO05D007774 1.0e-284 983.0 610 80.0
GSVIVG01036631001 Vitis vinifera HOM05D006110 ORTHO05D007774 3.3e-283 978.0 611 78.9
Glyma.04G133800 Glycine max HOM05D006110 ORTHO05D007774 5.7e-283 977.2 610 79.8
GSVIVG01036611001 Vitis vinifera HOM05D006110 ORTHO05D007774 1.3e-282 976.1 611 78.9
RcHm_v2.0_Chr1g0327151 Rosa chinensis HOM05D006110 ORTHO05D007774 8.2e-282 973.4 614 79.5
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 1.1e-281 973.0 613 79.0
MSTRG.16978 Avicennia marina HOM05D006110 ORTHO05D007774 2.4e-281 971.8 606 78.9
Duzib106G1787 Durio zibethinus HOM05D006110 ORTHO05D007774 4.1e-281 971.1 625 78.2
CANSAT56G0825 Cannabis sativa HOM05D006110 ORTHO05D007774 1.7e-279 965.7 617 78.6
Dinv11233 Davidia involucrata HOM05D006110 ORTHO05D007774 5.0e-279 964.1 586 81.2
Lj3g0023685 Lotus japonicus HOM05D006110 ORTHO05D007774 2.7e-277 958.4 610 78.5
FAN03G2625 Fragaria x ananassa HOM05D006110 ORTHO05D007774 1.9e-275 952.2 603 79.6
arahy.Tifrunner.gnm1.ann1.Y0U2QZ Arachis hypogaea HOM05D006110 ORTHO05D007774 4.3e-275 951.0 606 79.0
arahy.Tifrunner.gnm1.ann1.P4BN3A Arachis hypogaea HOM05D006110 ORTHO05D007774 1.6e-274 949.1 606 78.9
Gorai.012G019300 Gossypium raimondii HOM05D006110 ORTHO05D007774 8.2e-274 946.8 612 77.5
MD14G1003800 Malus domestica HOM05D006110 ORTHO05D007774 2.4e-273 945.3 612 78.3
THA.LOC104826748 Tarenaya hassleriana HOM05D006110 ORTHO05D007774 2.4e-273 945.3 600 77.0
Gohir.A05G399300 Gossypium hirsutum HOM05D006110 ORTHO05D007774 9.1e-273 943.3 612 77.5
FvH4_7g03810 Fragaria vesca HOM05D006110 ORTHO05D007774 5.9e-272 940.6 614 77.9
Potri.001G031700 Populus trichocarpa HOM05D006110 ORTHO05D007774 7.7e-272 940.3 610 77.0
Peaxi162Scf00220g00411 Petunia axillaris HOM05D006110 ORTHO05D007774 1.3e-271 939.5 605 76.7
Potri.003G194000 Populus trichocarpa HOM05D006110 ORTHO05D007774 1.3e-271 939.5 610 76.7
Phvul.005G004500 Phaseolus vulgaris HOM05D006110 ORTHO05D007774 2.9e-271 938.3 610 76.9
EL10Ac7g17197 Beta vulgaris HOM05D006110 ORTHO05D007774 8.5e-271 936.8 609 76.4
Psat5g221960 Pisum sativum HOM05D006110 ORTHO05D007774 2.7e-269 931.8 602 77.4
Rhsim07G0069200 Rhododendron simsii HOM05D006110 ORTHO05D007774 4.6e-269 931.0 650 72.9
FAN10G4343 Fragaria x ananassa HOM05D006110 ORTHO05D007774 7.9e-269 930.2 616 77.3
TPR.G7074 Trifolium pratense HOM05D006110 ORTHO05D007774 1.4e-268 929.5 603 77.8
Gohir.D04G016600 Gossypium hirsutum HOM05D006110 ORTHO05D007774 7.4e-267 923.7 612 76.3
Sopen01g040330 Solanum pennellii HOM05D006110 ORTHO05D007774 1.3e-266 922.9 610 75.4
CAN.G134.27 Capsicum annuum HOM05D006110 ORTHO05D007774 2.2e-266 922.2 607 76.1
Solyc01g096600.4 Solanum lycopersicum HOM05D006110 ORTHO05D007774 2.2e-266 922.2 610 75.4
FAN06G2813 Fragaria x ananassa HOM05D006110 ORTHO05D007774 4.8e-266 921.0 641 74.4
ECA233G5267 Erigeron canadensis HOM05D006110 ORTHO05D007774 4.5e-264 914.4 610 75.2
HanXRQChr02g0048711 Helianthus annuus HOM05D006110 ORTHO05D007774 2.9e-263 911.8 603 75.3
CSS0009585 Camellia sinensis var. sinensis HOM05D006110 ORTHO05D007774 1.4e-262 909.4 589 78.6
Lalb_Chr20g0109671 Lupinus albus HOM05D006110 ORTHO05D007774 2.5e-262 908.7 607 75.3
Lalb_Chr20g0109811 Lupinus albus HOM05D006110 ORTHO05D007774 7.2e-262 907.1 607 75.3
Actinidia07968 Actinidia chinensis HOM05D006110 ORTHO05D007774 5.2e-260 901.0 526 83.1
AL6G20270 Arabidopsis lyrata HOM05D006110 ORTHO05D007774 5.7e-259 897.5 602 74.1
Aa31LG1G21560 Aethionema arabicum HOM05D006110 ORTHO05D007774 7.4e-259 897.1 625 72.2
TAR625G0603 Trochodendron aralioides HOM05D006110 ORTHO05D007774 4.1e-257 891.3 590 75.6
AT5G09860 Arabidopsis thaliana HOM05D006110 ORTHO05D007774 1.2e-256 889.8 604 73.5
CARHR203490 Cardamine hirsuta HOM05D006110 ORTHO05D007774 1.3e-255 886.3 605 74.4
Lsat_1_v5_gn_6_13001 Lactuca sativa HOM05D006110 ORTHO05D007774 1.5e-254 882.9 532 80.1
COL.COLO4_19610 Corchorus olitorius HOM05D006110 ORTHO05D007774 7.2e-254 880.6 633 71.7
Carub.0006s0829 Capsella rubella HOM05D006110 ORTHO05D007774 9.4e-254 880.2 603 73.5
MBI03_g05118_MAGBIO Magnolia biondii HOM05D006110 ORTHO05D007774 2.7e-253 878.6 595 74.1
Nn8g38623 Nelumbo nucifera HOM05D006110 ORTHO05D007774 3.6e-253 878.2 608 73.0
Sc17g0003940 Simmondsia chinensis HOM05D006110 ORTHO05D007774 1.0e-252 876.7 525 81.0
Sp6g33550 Schrenkiella parvula HOM05D006110 ORTHO05D007774 4.0e-252 874.8 604 73.5
PGR031G3177 Punica granatum HOM05D006110 ORTHO05D007774 6.7e-252 874.0 576 75.9
Migut.B01193 Erythranthe guttata HOM05D006110 ORTHO05D007774 1.5e-251 872.8 617 71.3
BcaB05g21524 Brassica carinata HOM05D006110 ORTHO05D007774 2.6e-251 872.1 601 72.4
A02p00200 Brassica napus HOM05D006110 ORTHO05D007774 5.7e-251 870.9 607 72.7
vmacro13769 Vaccinium macrocarpon HOM05D006110 ORTHO05D007774 1.3e-250 869.8 699 65.7
Sabra01G0022800 Salix brachista HOM05D006110 ORTHO05D007774 1.6e-248 862.8 781 60.2
BraA02t05004Z Brassica rapa HOM05D006110 ORTHO05D007774 1.7e-247 859.4 617 70.7
ATR0618G428 Amborella trichopoda HOM05D006110 ORTHO05D007774 2.9e-247 858.6 595 72.1
C02p04120 Brassica napus HOM05D006110 ORTHO05D007774 1.5e-246 856.3 618 70.6
BolC2t06374H Brassica oleracea HOM05D006110 ORTHO05D007774 3.6e-245 851.7 622 69.9
Thhalv10013059m.g Eutrema salsugineum HOM05D006110 ORTHO05D007774 1.8e-244 849.4 601 71.5
Aqoxy3G04239 Aquilegia oxysepala HOM05D006110 ORTHO05D007774 2.0e-243 845.9 594 72.1
PSO782G1399 Papaver somniferum HOM05D006110 ORTHO05D007774 9.8e-243 843.6 586 72.2
Nn3g19142 Nelumbo nucifera HOM05D006110 ORTHO05D007774 8.3e-242 840.5 511 80.2
PSO063G0799 Papaver somniferum HOM05D006110 ORTHO05D007774 1.1e-241 840.1 587 72.2
BcaC03g13281 Brassica carinata HOM05D006110 ORTHO05D007774 1.7e-239 832.8 603 70.0
Ah.08g212940 Amaranthus hybridus HOM05D006110 ORTHO05D007774 8.3e-234 813.9 608 68.6
Oeu014626.1 Olea europaea HOM05D006110 ORTHO05D007774 2.7e-232 808.9 517 77.0
AUR62033702 Chenopodium quinoa HOM05D006110 ORTHO05D007774 6.1e-229 797.7 740 59.2
Os03g0110400 Oryza sativa ssp. japonica HOM05D006110 ORTHO05D007774 6.1e-229 797.7 591 67.7
SalBow5G1256 Salvia bowleyana HOM05D006110 ORTHO05D007774 1.4e-228 796.6 616 68.0
Nitab4.5_0002838g0090 Nicotiana tabacum HOM05D006110 ORTHO05D007774 1.1e-225 786.9 519 75.7
CDE05G1199 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 1.4e-225 786.6 586 68.4
SGA_v2.0_scaffold342G49409 Striga asiatica HOM05D006110 ORTHO05D007774 4.3e-222 775.0 661 64.0
Zm00001eb000780 Zea mays HOM05D006110 ORTHO05D007774 9.5e-222 773.9 589 66.9
unitig_26.g9755 Utricularia gibba HOM05D006110 ORTHO05D007774 3.2e-217 758.8 583 68.1
ClCG05G014210 Citrullus lanatus HOM05D006110 ORTHO05D007774 1.3e-215 753.4 451 85.4
Thecc.10G142600 Theobroma cacao HOM05D006110 ORTHO05D007774 2.5e-214 749.2 458 80.6
AUR62036785 Chenopodium quinoa HOM05D006110 ORTHO05D007774 5.4e-209 731.5 630 63.0
SMO134G0202 Selaginella moellendorffii HOM05D006110 ORTHO05D007774 1.2e-203 713.8 526 66.7
Mapoly0007s0076 Marchantia polymorpha HOM05D006110 ORTHO05D007774 2.7e-200 702.6 528 66.1
AagrBONN_evm.TU.Sc2ySwM_228.3473 Anthoceros agrestis HOM05D006110 ORTHO05D007774 1.3e-199 700.3 613 59.2
Cc00_g06110 Coffea canephora HOM05D006110 ORTHO05D007774 1.4e-196 690.3 455 75.8
AagrBONN_evm.TU.Sc2ySwM_228.3474 Anthoceros agrestis HOM05D006110 ORTHO05D007774 3.8e-194 682.2 586 60.4
Pp3c2_4660 Physcomitrium patens HOM05D006110 ORTHO05D007774 3.6e-189 665.6 562 61.4
TPR.G1403 Trifolium pratense HOM05D006110 ORTHO05D007774 1.5e-166 590.5 398 74.1
DCAR_022366 Daucus carota HOM05D006110 ORTHO05D007774 2.9e-154 549.7 384 70.1
HPP92_005051 Vanilla planifolia HOM05D006110 ORTHO05D007774 1.3e-133 481.1 339 71.4
Cpa.g.sc51.83 Carica papaya HOM05D006110 ORTHO05D007774 2.7e-131 473.4 270 81.1
Lj9C658T8 Lonicera japonica HOM05D006110 ORTHO05D007774 2.2e-130 470.3 287 82.2
SEGI_32708 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 2.3e-127 460.3 309 74.8
CBR_g45491 Chara braunii HOM05D006110 ORTHO05D007774 9.8e-126 454.9 557 46.5
Nitab4.5_0004168g0080 Nicotiana tabacum HOM05D006110 ORTHO05D007774 5.4e-108 396.0 349 62.2
Hund12548 Selenicereus undatus HOM05D006110 ORTHO05D007774 1.6e-99 367.9 284 66.2
Sed0017067 Sechium edule HOM05D006110 ORTHO05D007774 1.1e-95 355.1 188 92.6
Hund24435 Selenicereus undatus HOM05D006110 ORTHO05D007774 7.5e-94 349.0 258 69.8
HPP92_005075 Vanilla planifolia HOM05D006110 ORTHO05D007774 2.5e-89 334.0 283 61.1
Lj9A658T58 Lonicera japonica HOM05D006110 ORTHO05D007774 3.0e-82 310.5 224 74.1
CANSAT01G0073 Cannabis sativa HOM05D006110 ORTHO05D007774 4.3e-73 280.0 181 75.1
ClCG05G014240 Citrullus lanatus HOM05D006110 ORTHO05D007774 1.4e-71 275.0 188 78.7
PRCOL_00001172 Prasinoderma coloniale HOM05D006110 ORTHO05D007774 6.9e-71 272.7 445 37.5
CDE05G0354 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 2.8e-56 224.2 373 39.1
Cc00_g06120 Coffea canephora HOM05D006110 ORTHO05D007774 4.9e-53 213.4 136 77.9
CANSAT01G1515 Cannabis sativa HOM05D006110 ORTHO05D007774 1.1e-52 212.2 108 86.1
SEGI_24206 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 1.8e-47 194.9 189 57.1
Oeu014625.1 Olea europaea HOM05D006110 ORTHO05D007774 3.1e-47 194.1 162 64.8
CDE05G3545 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 4.1e-47 193.7 137 70.8
SEGI_05467 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 2.0e-38 164.9 109 66.1
Actinidia06221 Actinidia chinensis HOM05D006110 ORTHO05D007774 7.7e-38 162.9 174 55.2
Lj9C658T10 Lonicera japonica HOM05D006110 ORTHO05D007774 6.3e-24 116.7 66 75.8
Cre16.g695300 Chlamydomonas reinhardtii HOM05D006110 ORTHO05D007774 1.3e-21 109.0 261 29.9
QL04p021235 Quercus lobata HOM05D006110 ORTHO05D011410 1.2e-06 59.3 55 63.6
vmacro23293 Vaccinium macrocarpon HOM05D000003 ORTHO05D000006 5.9e-06 57.0 110 36.4


User provided reference genes

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