Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019859.2 Cucumis melo HOM05D005033 ORTHO05D007005 9.2e-306 1052.7 537 100.0
CsaV3_2G032850 Cucumis sativus L. HOM05D005033 ORTHO05D007005 5.8e-300 1033.5 537 97.4
ClCG09G006560 Citrullus lanatus HOM05D005033 ORTHO05D007005 1.7e-296 1021.9 538 96.1
Sed0023623 Sechium edule HOM05D005033 ORTHO05D007005 1.0e-259 899.8 539 86.1
Sed0004918 Sechium edule HOM05D005033 ORTHO05D007005 3.2e-258 894.8 537 84.5
GSVIVG01034665001 Vitis vinifera HOM05D005033 ORTHO05D007005 1.9e-242 842.4 537 76.7
Duzib130G0002 Durio zibethinus HOM05D005033 ORTHO05D007005 2.7e-241 838.6 517 78.7
Duzib138G0857 Durio zibethinus HOM05D005033 ORTHO05D007005 4.7e-241 837.8 517 78.9
Potri.008G029100 Populus trichocarpa HOM05D005033 ORTHO05D007005 2.3e-240 835.5 527 76.7
Atru.chr13.2088 Acer truncatum HOM05D005033 ORTHO05D007005 6.8e-240 833.9 521 77.9
Actinidia22298 Actinidia chinensis HOM05D005033 ORTHO05D007005 3.4e-239 831.6 522 78.5
Eucgr.J01030 Eucalyptus grandis HOM05D005033 ORTHO05D007005 6.3e-238 827.4 534 77.5
Gohir.D07G190300 Gossypium hirsutum HOM05D005033 ORTHO05D007005 3.1e-237 825.1 511 78.5
VMungo0720G2563 Vigna mungo HOM05D005033 ORTHO05D007005 1.6e-236 822.8 538 76.4
Glyma.10G200300 Glycine max HOM05D005033 ORTHO05D007005 5.0e-235 817.8 532 75.8
Gorai.001G212400 Gossypium raimondii HOM05D005033 ORTHO05D007005 5.0e-235 817.8 511 78.1
Gohir.A07G183600 Gossypium hirsutum HOM05D005033 ORTHO05D007005 5.5e-234 814.3 513 77.6
Sabra10G0180300 Salix brachista HOM05D005033 ORTHO05D007005 3.6e-233 811.6 532 74.4
Glyma.20G190200 Glycine max HOM05D005033 ORTHO05D007005 6.1e-233 810.8 524 76.7
Peaxi162Scf00450g00616 Petunia axillaris HOM05D005033 ORTHO05D007005 3.0e-232 808.5 513 77.4
PGR083G2464 Punica granatum HOM05D005033 ORTHO05D007005 1.5e-231 806.2 521 77.5
Hma1.2p1_0446F.1_g154670 Hydrangea macrophylla HOM05D005033 ORTHO05D007005 4.4e-231 804.7 521 76.2
Solyc05g008190.3 Solanum lycopersicum HOM05D005033 ORTHO05D007005 3.7e-230 801.6 524 75.2
Ciclev10003719m.g Citrus clementina HOM05D005033 ORTHO05D007005 1.8e-229 799.3 522 76.8
Sopen05g004030 Solanum pennellii HOM05D005033 ORTHO05D007005 2.4e-229 798.9 524 74.8
CAN.G1334.3 Capsicum annuum HOM05D005033 ORTHO05D007005 3.5e-228 795.0 537 72.8
TAR633G0665 Trochodendron aralioides HOM05D005033 ORTHO05D007005 3.5e-228 795.0 523 74.8
Nitab4.5_0004816g0020 Nicotiana tabacum HOM05D005033 ORTHO05D007005 4.5e-228 794.7 529 75.0
Cc02_g10440 Coffea canephora HOM05D005033 ORTHO05D007005 7.7e-228 793.9 510 77.1
Phvul.007G144800 Phaseolus vulgaris HOM05D005033 ORTHO05D007005 7.7e-228 793.9 525 75.2
Potri.010G232500 Populus trichocarpa HOM05D005033 ORTHO05D007005 1.3e-227 793.1 528 73.7
Thecc.01G170700 Theobroma cacao HOM05D005033 ORTHO05D007005 5.0e-227 791.2 517 75.2
TWI34G0149 Tripterygium wilfordii HOM05D005033 ORTHO05D007005 5.0e-227 791.2 516 77.5
Lj5g0024582 Lotus japonicus HOM05D005033 ORTHO05D007005 6.6e-227 790.8 524 75.2
PGSC0003DMG400030544 Solanum tuberosum HOM05D005033 ORTHO05D007005 8.0e-225 783.9 513 75.2
Nn8g40819 Nelumbo nucifera HOM05D005033 ORTHO05D007005 4.0e-224 781.6 534 73.4
Sc09g0005810 Simmondsia chinensis HOM05D005033 ORTHO05D007005 5.2e-224 781.2 532 73.3
MD07G1075700 Malus domestica HOM05D005033 ORTHO05D007005 9.8e-223 776.9 529 73.3
Prupe.2G096600 Prunus persica HOM05D005033 ORTHO05D007005 9.8e-223 776.9 529 73.3
Manes.04G062300 Manihot esculenta HOM05D005033 ORTHO05D007005 2.2e-222 775.8 523 72.8
CANSAT11G2161 Cannabis sativa HOM05D005033 ORTHO05D007005 6.3e-222 774.2 539 73.7
Ca_10465_v3 Cicer arietinum L. HOM05D005033 ORTHO05D007005 6.3e-222 774.2 538 72.3
Lalb_Chr21g0313111 Lupinus albus HOM05D005033 ORTHO05D007005 8.3e-222 773.9 524 73.1
Hund09612 Selenicereus undatus HOM05D005033 ORTHO05D007005 3.2e-221 771.9 528 74.2
Lj4A548T13 Lonicera japonica HOM05D005033 ORTHO05D007005 5.4e-221 771.2 522 73.9
MSTRG.405 Avicennia marina HOM05D005033 ORTHO05D007005 1.3e-219 766.5 517 73.3
AUR62018476 Chenopodium quinoa HOM05D005033 ORTHO05D007005 1.7e-219 766.1 537 71.9
CSS0020475 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.9e-218 762.7 527 72.9
DCAR_019312 Daucus carota HOM05D005033 ORTHO05D007005 4.3e-218 761.5 528 71.0
Medtr1g090877 Medicago truncatula HOM05D005033 ORTHO05D007005 1.6e-217 759.6 538 71.0
QL05p060417 Quercus lobata HOM05D005033 ORTHO05D007005 8.0e-217 757.3 522 73.4
Lj4A576G37 Lonicera japonica HOM05D005033 ORTHO05D007005 2.3e-216 755.7 522 73.2
EL10Ac3g05920 Beta vulgaris HOM05D005033 ORTHO05D007005 1.3e-214 750.0 513 73.1
BolC1t05387H Brassica oleracea HOM05D005033 ORTHO05D007005 1.3e-214 750.0 529 70.9
BraA05t22654Z Brassica rapa HOM05D005033 ORTHO05D007005 2.2e-214 749.2 529 71.1
BcaNung06294 Brassica carinata HOM05D005033 ORTHO05D007005 2.9e-214 748.8 529 70.3
CARHR085050 Cardamine hirsuta HOM05D005033 ORTHO05D007005 2.9e-214 748.8 535 71.0
CiPaw.12G008100 Carya illinoinensis HOM05D005033 ORTHO05D007005 1.1e-213 746.9 519 72.4
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 3.2e-213 745.3 529 70.3
Aqoxy7G00894 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 5.4e-213 744.6 529 70.7
COL.COLO4_07176 Corchorus olitorius HOM05D005033 ORTHO05D007005 1.6e-212 743.0 571 66.0
Psat6g174240 Pisum sativum HOM05D005033 ORTHO05D007005 1.6e-212 743.0 538 69.3
arahy.Tifrunner.gnm1.ann1.BLA122 Arachis hypogaea HOM05D005033 ORTHO05D007005 2.7e-212 742.3 535 68.8
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 3.5e-212 741.9 525 70.7
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 7.8e-212 740.7 529 70.5
BcaB04g21233 Brassica carinata HOM05D005033 ORTHO05D007005 1.3e-211 740.0 529 70.3
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 1.3e-211 740.0 526 70.5
Sp3g08810 Schrenkiella parvula HOM05D005033 ORTHO05D007005 1.3e-211 740.0 531 70.2
BcaNung04933 Brassica carinata HOM05D005033 ORTHO05D007005 6.6e-211 737.6 529 70.3
ECA236G1450 Erigeron canadensis HOM05D005033 ORTHO05D007005 3.3e-210 735.3 515 70.7
Aqoxy6G00730 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 4.3e-210 734.9 516 70.7
Ah.01g017010 Amaranthus hybridus HOM05D005033 ORTHO05D007005 3.6e-209 731.9 508 72.4
MD13G1165600 Malus domestica HOM05D005033 ORTHO05D007005 3.6e-209 731.9 544 70.0
Nitab4.5_0006512g0050 Nicotiana tabacum HOM05D005033 ORTHO05D007005 1.4e-208 729.9 528 70.8
BraA01t04244Z Brassica rapa HOM05D005033 ORTHO05D007005 2.3e-208 729.2 487 73.7
Rhsim02G0215300 Rhododendron simsii HOM05D005033 ORTHO05D007005 1.2e-207 726.9 573 66.7
RcHm_v2.0_Chr1g0336741 Rosa chinensis HOM05D005033 ORTHO05D007005 1.3e-206 723.4 524 69.8
arahy.Tifrunner.gnm1.ann1.FAT33H Arachis hypogaea HOM05D005033 ORTHO05D007005 1.4e-205 719.9 588 62.8
FAN10G0702 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.2e-204 716.8 528 68.4
Migut.F01668 Erythranthe guttata HOM05D005033 ORTHO05D007005 2.7e-204 715.7 529 68.1
Haze_05486 Corylus avellana HOM05D005033 ORTHO05D007005 4.6e-204 714.9 615 62.1
vmacro04570 Vaccinium macrocarpon HOM05D005033 ORTHO05D007005 6.0e-204 714.5 587 65.2
AL3G21930 Arabidopsis lyrata HOM05D005033 ORTHO05D007005 1.0e-203 713.8 531 68.2
FAN03G1010 Fragaria x ananassa HOM05D005033 ORTHO05D007005 5.1e-203 711.4 528 67.8
Thhalv10020478m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 6.6e-203 711.1 530 67.4
AT3G10530 Arabidopsis thaliana HOM05D005033 ORTHO05D007005 1.5e-202 709.9 531 68.2
Carub.0003s0977 Capsella rubella HOM05D005033 ORTHO05D007005 1.5e-202 709.9 529 68.1
THA.LOC104826968 Tarenaya hassleriana HOM05D005033 ORTHO05D007005 2.5e-202 709.1 444 76.4
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 2.1e-201 706.1 520 68.1
TPR.G37792 Trifolium pratense HOM05D005033 ORTHO05D007005 4.0e-200 701.8 538 66.5
CSS0041797 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 3.4e-199 698.7 528 68.2
HanXRQChr04g0126221 Helianthus annuus HOM05D005033 ORTHO05D007005 7.6e-199 697.6 516 67.1
CDE08G1035 Ceratophyllum demersum HOM05D005033 ORTHO05D007005 5.4e-197 691.4 514 66.7
FvH4_7g06900 Fragaria vesca HOM05D005033 ORTHO05D007005 3.5e-196 688.7 528 66.5
HPP92_022999 Vanilla planifolia HOM05D005033 ORTHO05D007005 6.0e-196 688.0 516 66.7
unitig_899.g15062 Utricularia gibba HOM05D005033 ORTHO05D007005 2.3e-195 686.0 532 66.9
Actinidia13190 Actinidia chinensis HOM05D005033 ORTHO05D007005 1.4e-192 676.8 431 76.8
Aa31LG4G2160 Aethionema arabicum HOM05D005033 ORTHO05D007005 8.9e-192 674.1 532 64.5
Oeu027297.1 Olea europaea HOM05D005033 ORTHO05D007005 2.4e-189 666.0 569 62.7
Dinv31275 Davidia involucrata HOM05D005033 ORTHO05D007005 3.2e-189 665.6 461 71.8
PSO063G4428 Papaver somniferum HOM05D005033 ORTHO05D007005 2.1e-188 662.9 508 66.1
PSO339G5947 Papaver somniferum HOM05D005033 ORTHO05D007005 1.5e-186 656.8 506 66.2
FAN06G3772 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.4e-184 650.2 528 64.4
Zm00001eb272000 Zea mays HOM05D005033 ORTHO05D007005 4.0e-184 648.7 508 65.2
FAN01G1898 Fragaria x ananassa HOM05D005033 ORTHO05D007005 3.4e-183 645.6 528 63.6
ATR0598G298 Amborella trichopoda HOM05D005033 ORTHO05D007005 1.1e-181 640.6 511 64.4
SHI01926 Sapria himalayana HOM05D005033 ORTHO05D007005 1.1e-181 640.6 571 58.1
Lsat_1_v5_gn_5_142541 Lactuca sativa HOM05D005033 ORTHO05D007005 7.9e-180 634.4 494 64.4
CSS0012290 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.5e-175 620.2 512 64.6
Sc12g0008670 Simmondsia chinensis HOM05D005033 ORTHO05D007005 1.4e-173 613.6 409 75.3
Os01g0183100 Oryza sativa ssp. japonica HOM05D005033 ORTHO05D007005 6.7e-171 604.7 518 59.7
Nitab4.5_0004816g0100 Nicotiana tabacum HOM05D005033 ORTHO05D007005 9.3e-165 584.3 470 64.9
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 1.0e-163 580.9 478 63.2
Ciclev10003777m.g Citrus clementina HOM05D005033 ORTHO05D007005 1.2e-156 557.4 506 61.3
PSO591G0084 Papaver somniferum HOM05D005033 ORTHO05D007005 6.1e-156 555.1 433 65.1
Prupe.1G365200 Prunus persica HOM05D005033 ORTHO05D007005 2.3e-131 473.4 447 60.0
Mapoly0082s0024 Marchantia polymorpha HOM05D005033 ORTHO05D007005 5.2e-131 472.2 514 50.6
Pp3c1_3590 Physcomitrium patens HOM05D005033 ORTHO05D007005 6.3e-129 465.3 497 47.9
SMO367G1111 Selaginella moellendorffii HOM05D005033 ORTHO05D007005 1.1e-128 464.5 536 48.1
AagrBONN_evm.TU.Sc2ySwM_362.274 Anthoceros agrestis HOM05D005033 ORTHO05D007005 5.3e-128 462.2 475 51.8
BcaC05g29452 Brassica carinata HOM05D005033 ORTHO05D007005 2.9e-126 456.4 328 70.7
AUR62020948 Chenopodium quinoa HOM05D005033 ORTHO05D007005 2.6e-122 443.4 309 73.5
Cre12.g502800 Chlamydomonas reinhardtii HOM05D005033 ORTHO05D007005 3.8e-118 429.5 526 44.7
MCO04G094 Micromonas commoda HOM05D005033 ORTHO05D007005 1.6e-116 424.1 507 44.6
CBR_g12704 Chara braunii HOM05D005033 ORTHO05D007005 3.0e-115 419.9 470 47.2
Nn2g13935 Nelumbo nucifera HOM05D005033 ORTHO05D007005 8.0e-108 395.2 271 73.8
Peaxi162Scf00159g00012 Petunia axillaris HOM05D005033 ORTHO05D007005 8.9e-107 391.7 289 69.2
Cpa.g.sc116.23 Carica papaya HOM05D005033 ORTHO05D007005 5.7e-106 389.0 525 46.3
Thhalv10016037m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 2.2e-105 387.1 367 57.2
PRCOL_00001195 Prasinoderma coloniale HOM05D005033 ORTHO05D007005 7.8e-103 378.6 509 42.2
SEGI_20556 Sequoiadendron giganteum HOM05D005033 ORTHO05D007005 1.0e-99 368.2 357 52.7
Cfa025315 Carpinus fangiana HOM05D005033 ORTHO05D007005 7.6e-82 308.9 523 38.4
Actinidia36730 Actinidia chinensis HOM05D005033 ORTHO05D007005 4.8e-44 183.3 105 80.0
RcHm_v2.0_Chr1g0336811 Rosa chinensis HOM05D005033 ORTHO05D007005 6.5e-33 146.4 125 59.2
Peaxi162Scf00159g00111 Petunia axillaris HOM05D005033 ORTHO05D007005 3.2e-24 117.5 75 74.7
RcHm_v2.0_Chr1g0336801 Rosa chinensis HOM05D005033 ORTHO05D007005 3.3e-21 107.5 65 72.3
CAN.G1393.2 Capsicum annuum HOM05D005033 ORTHO05D005387 3.7e-20 104.0 148 44.6
MD05G1224900 Malus domestica HOM05D005033 ORTHO05D007005 8.5e-17 92.8 59 78.0
MD09G1267900 Malus domestica HOM05D005033 ORTHO05D007005 5.5e-16 90.1 55 81.8
MD08G1003200 Malus domestica HOM05D005033 ORTHO05D245307 6.3e-12 76.6 70 54.3
MD08G1003300 Malus domestica HOM05D005033 ORTHO05D036613 8.2e-12 76.3 61 55.7
Aa31sc66G30 Aethionema arabicum HOM05D005033 ORTHO05D007005 1.8e-11 75.1 126 40.5
PSO832G0093 Papaver somniferum HOM05D003335 ORTHO05D003853 1.3e-09 68.9 200 29.5
PSO764G0342 Papaver somniferum HOM05D003335 ORTHO05D003853 2.9e-09 67.8 198 29.8
DCAR_031698 Daucus carota HOM05D003335 ORTHO05D003853 6.5e-09 66.6 180 28.9
CDE08G0175 Ceratophyllum demersum HOM05D003335 ORTHO05D003853 1.5e-08 65.5 206 27.2
arahy.Tifrunner.gnm1.ann1.5U8ZY7 Arachis hypogaea HOM05D005033 ORTHO05D083851 3.2e-08 64.3 57 56.1
CDE02G2483 Ceratophyllum demersum HOM05D003335 ORTHO05D003853 5.5e-08 63.5 206 25.7
Zm00001eb046370 Zea mays HOM05D003335 ORTHO05D003853 5.5e-08 63.5 205 27.3
Os10g0466300 Oryza sativa ssp. japonica HOM05D003335 ORTHO05D003853 7.2e-08 63.2 231 26.4
Aqoxy2G03744 Aquilegia oxysepala HOM05D003335 ORTHO05D003853 9.4e-08 62.8 203 27.6
Zm00001eb222190 Zea mays HOM05D003335 ORTHO05D003853 9.4e-08 62.8 207 27.5
arahy.Tifrunner.gnm1.ann1.R7HTY3 Arachis hypogaea HOM05D002393 ORTHO05D002845 1.6e-07 62.0 49 61.2
AL4G28990 Arabidopsis lyrata HOM05D003335 ORTHO05D003853 4.7e-07 60.5 183 27.3
Pp3c6_19920 Physcomitrium patens HOM05D003335 ORTHO05D003853 4.7e-07 60.5 164 27.4
Mapoly0157s0022 Marchantia polymorpha HOM05D003335 ORTHO05D003853 6.1e-07 60.1 164 26.8
TAR365G0561 Trochodendron aralioides HOM05D003335 ORTHO05D003853 8.0e-07 59.7 243 24.7
AT2G33340 Arabidopsis thaliana HOM05D003335 ORTHO05D003853 1.0e-06 59.3 177 27.7
Sabra08G0131000 Salix brachista HOM05D003335 ORTHO05D003853 1.0e-06 59.3 134 29.9
Carub.0004s1496 Capsella rubella HOM05D003335 ORTHO05D003853 1.4e-06 58.9 183 27.3
MCO09G018 Micromonas commoda HOM05D003335 ORTHO05D003853 1.4e-06 58.9 190 28.4
Nn7g38170 Nelumbo nucifera HOM05D003335 ORTHO05D003853 1.4e-06 58.9 163 26.4
Potri.010G066000 Populus trichocarpa HOM05D003335 ORTHO05D003853 1.4e-06 58.9 164 28.0
Potri.008G171600 Populus trichocarpa HOM05D003335 ORTHO05D003853 1.8e-06 58.5 134 30.6
Pp3c5_9900 Physcomitrium patens HOM05D003335 ORTHO05D003853 2.3e-06 58.2 144 27.1
THA.LOC104816006 Tarenaya hassleriana HOM05D003335 ORTHO05D003853 2.3e-06 58.2 203 26.6
Lalb_Chr01g0020321 Lupinus albus HOM05D003335 ORTHO05D003853 3.0e-06 57.8 129 27.1
Sabra10G0041200 Salix brachista HOM05D003335 ORTHO05D003853 3.0e-06 57.8 102 33.3
Glyma.20G084500 Glycine max HOM05D003335 ORTHO05D003853 4.0e-06 57.4 164 23.8
Lalb_Chr19g0128501 Lupinus albus HOM05D003335 ORTHO05D003853 5.2e-06 57.0 129 27.1
Sp4g15650 Schrenkiella parvula HOM05D003335 ORTHO05D003853 5.2e-06 57.0 185 25.9
Glyma.10G133700 Glycine max HOM05D003335 ORTHO05D003853 6.8e-06 56.6 164 23.8
VMungo0720G1182 Vigna mungo HOM05D003335 ORTHO05D003853 6.8e-06 56.6 164 23.8
BcaB06g28676 Brassica carinata HOM05D003335 ORTHO05D003853 8.8e-06 56.2 185 25.4
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 8.8e-06 56.2 148 25.0
Cpa.g.sc44.4 Carica papaya HOM05D003335 ORTHO05D003853 8.8e-06 56.2 101 31.7
THA.LOC104801067 Tarenaya hassleriana HOM05D003335 ORTHO05D003853 8.8e-06 56.2 203 25.1


User provided reference genes

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