Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019777.2 Cucumis melo HOM05D003639 ORTHO05D004246 5.2e-79 297.7 159 100.0
ClCG08G008940 Citrullus lanatus HOM05D003639 ORTHO05D004246 3.6e-64 248.4 158 85.4
CsaV3_6G036200 Cucumis sativus L. HOM05D003639 ORTHO05D004246 3.0e-63 245.4 158 86.7
MELO3C026433.2 Cucumis melo HOM05D003639 ORTHO05D004246 6.8e-63 244.2 158 86.1
Lj4C34T1 Lonicera japonica HOM05D003639 ORTHO05D004246 1.2e-30 137.1 168 56.5
Medtr0012s0110 Medicago truncatula HOM05D003639 ORTHO05D004246 3.7e-29 132.1 161 53.4
CSS0048368 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 6.4e-29 131.3 102 69.6
QL07p005224 Quercus lobata HOM05D003639 ORTHO05D004246 5.4e-28 128.3 170 49.4
Haze_19749 Corylus avellana HOM05D003639 ORTHO05D004246 9.2e-28 127.5 162 49.4
TWI74G0834 Tripterygium wilfordii HOM05D003639 ORTHO05D004246 3.9e-26 122.1 100 70.0
Sed0002463 Sechium edule HOM05D003639 ORTHO05D004246 6.6e-26 121.3 159 52.2
Potri.006G045800 Populus trichocarpa HOM05D003639 ORTHO05D004246 8.6e-26 120.9 163 50.3
Duzib132G0222 Durio zibethinus HOM05D003639 ORTHO05D004246 1.1e-25 120.6 166 48.8
CSS0037940 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 2.5e-25 119.4 186 41.9
Dinv30299 Davidia involucrata HOM05D003639 ORTHO05D004246 3.3e-25 119.0 162 50.6
Lj5g0008946 Lotus japonicus HOM05D003639 ORTHO05D004246 4.3e-25 118.6 163 52.8
MSTRG.6401 Avicennia marina HOM05D003639 ORTHO05D004246 5.6e-25 118.2 130 55.4
COL.COLO4_24957 Corchorus olitorius HOM05D003639 ORTHO05D004246 9.6e-25 117.5 162 47.5
Solyc04g016510.3 Solanum lycopersicum HOM05D003639 ORTHO05D004246 9.6e-25 117.5 97 67.0
Migut.J01707 Erythranthe guttata HOM05D003639 ORTHO05D004246 2.1e-24 116.3 164 47.0
Ah.13g076790 Amaranthus hybridus HOM05D003639 ORTHO05D004246 2.8e-24 115.9 176 47.2
Cpa.g.sc120.6 Carica papaya HOM05D003639 ORTHO05D004246 2.8e-24 115.9 166 49.4
Sopen04g008580 Solanum pennellii HOM05D003639 ORTHO05D004246 2.8e-24 115.9 98 66.3
Glyma.02G190600 Glycine max HOM05D003639 ORTHO05D004246 4.7e-24 115.2 163 49.7
CiPaw.09G042100 Carya illinoinensis HOM05D003639 ORTHO05D004246 6.2e-24 114.8 160 48.8
Medtr3g045130 Medicago truncatula HOM05D003639 ORTHO05D004246 6.2e-24 114.8 161 48.4
TAR369G0628 Trochodendron aralioides HOM05D003639 ORTHO05D004246 1.4e-23 113.6 179 44.1
Thecc.02G139000 Theobroma cacao HOM05D003639 ORTHO05D004246 1.8e-23 113.2 170 47.1
Prupe.7G050300 Prunus persica HOM05D003639 ORTHO05D004246 4.0e-23 112.1 99 66.7
CAN.G1237.4 Capsicum annuum HOM05D003639 ORTHO05D004246 6.8e-23 111.3 87 70.1
CANSAT80G2101 Cannabis sativa HOM05D003639 ORTHO05D004246 3.4e-22 109.0 115 60.9
AUR62024528 Chenopodium quinoa HOM05D003639 ORTHO05D004246 4.4e-22 108.6 177 46.9
Sc19g0008460 Simmondsia chinensis HOM05D003639 ORTHO05D004246 4.4e-22 108.6 182 43.4
PGSC0003DMG400012703 Solanum tuberosum HOM05D003639 ORTHO05D004246 4.4e-22 108.6 178 45.5
arahy.Tifrunner.gnm1.ann1.Y8CJQK Arachis hypogaea HOM05D003639 ORTHO05D004246 1.7e-21 106.7 181 44.8
Gohir.A12G015000 Gossypium hirsutum HOM05D003639 ORTHO05D004246 2.2e-21 106.3 158 47.5
Gohir.D12G015400 Gossypium hirsutum HOM05D003639 ORTHO05D004246 2.9e-21 105.9 158 48.7
Sabra06G0031300 Salix brachista HOM05D003639 ORTHO05D004246 4.9e-21 105.1 162 46.3
Gorai.008G015500 Gossypium raimondii HOM05D003639 ORTHO05D004246 6.4e-21 104.8 158 46.8
Hma1.2p1_2162F.1_g315680 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 1.1e-20 104.0 174 40.8
PGR004G0521 Punica granatum HOM05D003639 ORTHO05D004246 1.4e-20 103.6 172 45.3
unitig_44.g31550 Utricularia gibba HOM05D003639 ORTHO05D004246 1.4e-20 103.6 162 42.6
AUR62026120 Chenopodium quinoa HOM05D003639 ORTHO05D004246 3.2e-20 102.4 180 42.2
Atru.chr1.1191 Acer truncatum HOM05D003639 ORTHO05D004246 4.2e-20 102.1 164 47.6
Nitab4.5_0001618g0260 Nicotiana tabacum HOM05D003639 ORTHO05D004246 4.2e-20 102.1 84 69.0
arahy.Tifrunner.gnm1.ann1.6W6BYV Arachis hypogaea HOM05D003639 ORTHO05D004246 5.4e-20 101.7 181 43.6
Duzib248G1450 Durio zibethinus HOM05D003639 ORTHO05D004246 5.4e-20 101.7 175 44.0
Peaxi162Scf00130g00929 Petunia axillaris HOM05D003639 ORTHO05D004246 7.1e-20 101.3 87 70.1
Actinidia39194 Actinidia chinensis HOM05D003639 ORTHO05D004246 9.3e-20 100.9 89 64.0
DCAR_014011 Daucus carota HOM05D003639 ORTHO05D004246 9.3e-20 100.9 162 46.9
MD12G1086300 Malus domestica HOM05D003639 ORTHO05D004246 9.3e-20 100.9 110 59.1
Ca_25791_v3 Cicer arietinum L. HOM05D003639 ORTHO05D004246 1.2e-19 100.5 170 45.3
EL10Ac3g07157 Beta vulgaris HOM05D003639 ORTHO05D004246 6.0e-19 98.2 198 39.4
Nitab4.5_0000826g0140 Nicotiana tabacum HOM05D003639 ORTHO05D004246 1.0e-18 97.4 178 44.9
Psat6g009840 Pisum sativum HOM05D003639 ORTHO05D004246 1.0e-18 97.4 172 43.6
Potri.016G042250 Populus trichocarpa HOM05D003639 ORTHO05D004246 1.0e-18 97.4 126 50.8
Manes.09G015900 Manihot esculenta HOM05D003639 ORTHO05D004246 1.3e-18 97.1 147 46.3
TPR.G10246 Trifolium pratense HOM05D003639 ORTHO05D004246 1.3e-18 97.1 102 58.8
TPR.G1512 Trifolium pratense HOM05D003639 ORTHO05D004246 1.3e-18 97.1 87 65.5
CANSAT80G0359 Cannabis sativa HOM05D003639 ORTHO05D004246 1.7e-18 96.7 115 58.3
Nn7g37752 Nelumbo nucifera HOM05D003639 ORTHO05D004246 1.7e-18 96.7 172 43.0
Atru.chr6.1378 Acer truncatum HOM05D003639 ORTHO05D004246 1.5e-17 93.6 172 45.9
Phvul.007G249600 Phaseolus vulgaris HOM05D003639 ORTHO05D004246 1.5e-17 93.6 165 44.2
Hund19126 Selenicereus undatus HOM05D003639 ORTHO05D004246 1.9e-17 93.2 210 38.1
SalBow6G0945 Salvia bowleyana HOM05D003639 ORTHO05D004246 2.5e-17 92.8 173 43.9
Ciclev10006458m.g Citrus clementina HOM05D003639 ORTHO05D004246 3.3e-17 92.4 179 43.0
VMungo0720G2842 Vigna mungo HOM05D003639 ORTHO05D004246 1.6e-16 90.1 84 65.5
Glyma.10G000800 Glycine max HOM05D003639 ORTHO05D004246 6.2e-16 88.2 84 64.3
Lalb_Chr21g0305241 Lupinus albus HOM05D003639 ORTHO05D004246 6.2e-16 88.2 146 46.6
Eucgr.A02297 Eucalyptus grandis HOM05D003639 ORTHO05D004246 1.1e-15 87.4 156 44.9
Oeu023136.1 Olea europaea HOM05D003639 ORTHO05D004246 1.1e-15 87.4 84 60.7
Rhsim03G0032000 Rhododendron simsii HOM05D003639 ORTHO05D004246 1.4e-15 87.0 160 45.0
HPP92_010210 Vanilla planifolia HOM05D000527 ORTHO05D000559 2.4e-15 86.3 94 59.6
HPP92_010189 Vanilla planifolia HOM05D003639 ORTHO05D004246 3.1e-15 85.9 94 59.6
AL4G39590 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 9.0e-15 84.3 84 57.1
MBI13_g04793_MAGBIO Magnolia biondii HOM05D003639 ORTHO05D004246 1.5e-14 83.6 181 38.1
SEGI_17823 Sequoiadendron giganteum HOM05D003639 ORTHO05D004246 1.5e-14 83.6 107 51.4
Sp4g23770 Schrenkiella parvula HOM05D003639 ORTHO05D004246 2.0e-14 83.2 132 44.7
AT2G41500 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 2.6e-14 82.8 84 57.1
Peaxi162Scf00177g10117 Petunia axillaris HOM05D003639 ORTHO05D004246 3.4e-14 82.4 62 72.6
Lsat_1_v5_gn_4_41600 Lactuca sativa HOM05D003639 ORTHO05D004246 7.6e-14 81.3 151 41.7
SGA_v2.0_scaffold69G23129 Striga asiatica HOM05D003639 ORTHO05D004246 7.6e-14 81.3 103 51.5
Carub.0004s0611 Capsella rubella HOM05D003639 ORTHO05D004246 9.9e-14 80.9 84 57.1
C04p69090 Brassica napus HOM05D003639 ORTHO05D004246 2.2e-13 79.7 82 57.3
BolC4t28406H Brassica oleracea HOM05D003639 ORTHO05D004246 2.2e-13 79.7 82 57.3
Aqoxy3G00063 Aquilegia oxysepala HOM05D003639 ORTHO05D004246 4.9e-13 78.6 64 71.9
FAN09G4382 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.9e-13 78.6 84 58.3
THA.LOC104824426 Tarenaya hassleriana HOM05D003639 ORTHO05D004246 4.9e-13 78.6 82 57.3
ATR0665G145 Amborella trichopoda HOM05D003639 ORTHO05D004246 6.4e-13 78.2 76 56.6
unitig_578.g16292 Utricularia gibba HOM05D003639 ORTHO05D004246 6.4e-13 78.2 137 42.3
A04p31660 Brassica napus HOM05D003639 ORTHO05D004246 8.4e-13 77.8 130 42.3
BraA04t18624Z Brassica rapa HOM05D003639 ORTHO05D004246 8.4e-13 77.8 130 42.3
vmacro21947 Vaccinium macrocarpon HOM05D003639 ORTHO05D004246 1.1e-12 77.4 79 58.2
ECA234G2577 Erigeron canadensis HOM05D003639 ORTHO05D004246 1.9e-12 76.6 74 58.1
FAN01G0512 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.4e-12 76.3 77 59.7
FAN02G3905 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.4e-12 76.3 77 59.7
FAN03G0195 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.4e-12 76.3 77 59.7
FAN07G1748 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.4e-12 76.3 77 59.7
FAN10G2664 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.4e-12 76.3 77 59.7
FAN14G5922 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.4e-12 76.3 77 59.7
FAN17G0086 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.4e-12 76.3 77 59.7
FAN19G1783 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.4e-12 76.3 77 59.7
FAN22G1757 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.4e-12 76.3 77 59.7
FAN23G2202 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.4e-12 76.3 77 59.7
FAN24G0290 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.4e-12 76.3 77 59.7
SGA_v2.0_scaffold296G47577 Striga asiatica HOM05D003639 ORTHO05D004246 2.4e-12 76.3 85 52.9
PSO832G3057 Papaver somniferum HOM05D003639 ORTHO05D004246 3.2e-12 75.9 176 38.6
FvH4_6g24750 Fragaria vesca HOM05D003639 ORTHO05D004246 4.2e-12 75.5 81 54.3
FAN14G4828 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.2e-12 75.5 81 54.3
Medtr5g022690 Medicago truncatula HOM05D003639 ORTHO05D004246 4.2e-12 75.5 56 69.6
CDE04G0356 Ceratophyllum demersum HOM05D003639 ORTHO05D004246 7.1e-12 74.7 57 70.2
FAN06G0994 Fragaria x ananassa HOM05D003639 ORTHO05D004246 7.1e-12 74.7 77 58.4
FAN17G3014 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.3e-12 74.3 77 58.4
Thhalv10016457m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 1.2e-11 73.9 84 50.0
Aa31LG1G23520 Aethionema arabicum HOM05D003639 ORTHO05D004246 2.7e-11 72.8 112 44.6
FAN09G0054 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.7e-11 72.8 54 70.4
FAN13G2401 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.7e-11 72.8 54 70.4
FAN28G1931 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.7e-11 72.8 77 58.4
Mapoly0061s0123 Marchantia polymorpha HOM05D003639 ORTHO05D004246 3.5e-11 72.4 66 59.1
Zm00001eb017050 Zea mays HOM05D003639 ORTHO05D004246 3.5e-11 72.4 132 42.4
CARHR136620 Cardamine hirsuta HOM05D003639 ORTHO05D004246 6.0e-11 71.6 133 43.6
Thhalv10000860m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 6.0e-11 71.6 104 45.2
FAN27G3180 Fragaria x ananassa HOM05D003639 ORTHO05D004246 6.0e-11 71.6 77 57.1
Os03g0355200 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 6.0e-11 71.6 55 63.6
Os03g0355400 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 6.0e-11 71.6 55 63.6
BcaC02g12784 Brassica carinata HOM05D003639 ORTHO05D004246 3.0e-10 69.3 96 47.9
BcaNung06794 Brassica carinata HOM05D003639 ORTHO05D004246 3.0e-10 69.3 96 47.9
C04p02760 Brassica napus HOM05D003639 ORTHO05D004246 3.0e-10 69.3 96 47.9
BolC4t21916H Brassica oleracea HOM05D003639 ORTHO05D004246 5.1e-10 68.6 96 46.9
FAN05G0107 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.1e-10 68.6 52 69.2
AagrBONN_evm.TU.Sc2ySwM_117.1154 Anthoceros agrestis HOM05D003639 ORTHO05D004246 8.7e-10 67.8 54 61.1
TAR065G0002 Trochodendron aralioides HOM05D003639 ORTHO05D004246 1.5e-09 67.0 165 34.5
BolC5t34692H Brassica oleracea HOM05D003639 ORTHO05D004246 1.9e-09 66.6 96 46.9
A05p02320 Brassica napus HOM05D003639 ORTHO05D004246 5.6e-09 65.1 91 46.2
Pp3c9_11970 Physcomitrium patens HOM05D003639 ORTHO05D004246 7.3e-09 64.7 89 48.3
BraA05t19227Z Brassica rapa HOM05D003639 ORTHO05D004246 2.1e-08 63.2 94 44.7
SMO356G0612 Selaginella moellendorffii HOM05D003639 ORTHO05D004246 2.1e-08 63.2 54 55.6
PSO063G3048 Papaver somniferum HOM05D003639 ORTHO05D004246 2.8e-08 62.8 172 34.9
CBR_g723 Chara braunii HOM05D003639 ORTHO05D004246 8.1e-08 61.2 84 46.4
FAN16G0989 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.8e-07 60.1 77 51.9
Hma1.2p1_1333F.1_g276240 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 3.4e-06 55.8 42 69.0
Hma1.2p1_0338F.1_g129500 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 5.8e-06 55.1 42 66.7


User provided reference genes

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