Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 5.6e-203 710.7 350 100.0
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 2.1e-189 665.6 353 94.3
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 4.5e-184 647.9 351 91.7
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 8.3e-138 494.2 353 72.5
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 1.2e-133 480.3 352 65.1
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 6.8e-132 474.6 355 66.2
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 1.5e-131 473.4 356 66.0
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 1.3e-130 470.3 355 65.4
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 2.8e-130 469.2 356 63.8
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 4.9e-130 468.4 355 63.4
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 4.1e-129 465.3 349 64.5
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 4.1e-129 465.3 355 63.1
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.2e-128 463.8 349 64.2
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 5.9e-128 461.5 353 62.9
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 3.8e-127 458.8 355 63.9
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 6.6e-127 458.0 354 63.3
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 8.6e-127 457.6 366 62.8
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 1.1e-126 457.2 349 63.0
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.5e-126 456.8 357 64.1
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.5e-126 456.8 352 61.6
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 2.5e-126 456.1 357 62.2
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 3.3e-126 455.7 353 63.5
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 4.3e-126 455.3 355 62.5
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 5.6e-126 454.9 349 64.5
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 9.5e-126 454.1 359 62.4
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.6e-125 453.4 357 63.6
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 2.8e-125 452.6 357 61.9
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 3.6e-125 452.2 355 62.5
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 1.0e-124 450.7 347 64.0
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 2.3e-124 449.5 359 60.7
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 4.0e-124 448.7 352 59.9
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 4.0e-124 448.7 352 63.1
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 8.9e-124 447.6 350 62.9
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 1.2e-123 447.2 355 63.1
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.0e-123 446.4 360 61.9
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 2.6e-123 446.0 358 60.9
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 4.4e-123 445.3 362 61.0
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 1.7e-122 443.4 359 61.3
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 6.4e-122 441.4 349 62.2
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 8.3e-122 441.0 348 63.5
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 8.3e-122 441.0 349 62.2
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.4e-121 440.3 348 63.2
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.9e-121 439.9 346 60.7
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 3.2e-121 439.1 362 60.5
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 3.2e-121 439.1 346 60.7
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 5.4e-121 438.3 362 59.7
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 9.2e-121 437.6 360 58.1
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 9.2e-121 437.6 358 60.6
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 1.2e-120 437.2 349 60.7
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 2.0e-120 436.4 358 61.2
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 4.6e-120 435.3 350 60.3
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 6.0e-120 434.9 347 60.8
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 1.0e-119 434.1 350 60.6
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 1.0e-119 434.1 350 59.7
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 1.0e-119 434.1 356 61.5
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 2.3e-119 433.0 351 59.8
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 2.3e-119 433.0 351 59.8
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 2.3e-119 433.0 348 60.1
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 5.0e-119 431.8 349 58.7
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 6.6e-119 431.4 349 59.6
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 1.9e-118 429.9 349 60.5
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 1.9e-118 429.9 347 60.8
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 3.3e-118 429.1 353 60.6
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 4.3e-118 428.7 402 55.2
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 7.3e-118 427.9 355 61.1
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 9.5e-118 427.6 350 60.3
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 1.2e-117 427.2 353 60.1
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 2.1e-117 426.4 350 59.4
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 4.7e-117 425.2 348 59.8
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 6.2e-117 424.9 355 59.4
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 8.0e-117 424.5 350 58.3
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 8.0e-117 424.5 350 58.0
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 1.4e-116 423.7 349 58.7
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 1.4e-116 423.7 350 58.3
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 6.8e-116 421.4 350 58.9
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 8.9e-116 421.0 350 58.0
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 8.9e-116 421.0 350 58.0
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 8.9e-116 421.0 319 62.7
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 1.5e-115 420.2 349 59.0
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 2.0e-115 419.9 350 58.9
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 1.3e-114 417.2 359 59.6
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 2.9e-114 416.0 425 49.9
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 3.7e-114 415.6 360 58.3
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 4.9e-114 415.2 351 58.4
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 8.3e-114 414.5 351 58.4
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 1.1e-113 414.1 339 61.7
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 5.4e-113 411.8 479 48.0
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 6.0e-112 408.3 436 49.8
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 3.9e-111 405.6 360 55.3
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 6.6e-111 404.8 298 65.4
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 1.2e-109 400.6 354 57.1
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 1.6e-109 400.2 324 61.4
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 4.7e-109 398.7 395 52.4
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.8e-108 396.7 351 57.3
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 4.6e-104 382.1 361 54.3
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 1.3e-103 380.6 346 54.3
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 2.0e-99 366.7 359 50.7
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 1.7e-98 363.6 385 49.1
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 6.4e-98 361.7 266 62.8
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 3.2e-97 359.4 362 52.2
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 5.1e-95 352.1 356 47.8
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 8.7e-95 351.3 352 54.0
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 5.6e-94 348.6 247 63.6
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 8.1e-93 344.7 349 52.7
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 3.0e-87 326.2 321 53.0
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 1.5e-86 323.9 293 57.0
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 5.3e-84 315.5 287 56.8
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.5e-83 313.9 246 62.2
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 1.2e-80 304.3 207 67.6
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 2.7e-80 303.1 295 49.2
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.8e-77 293.1 208 66.3
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 5.3e-76 288.9 419 39.9
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 1.3e-74 284.3 377 40.3
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 3.8e-74 282.7 362 39.5
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 3.3e-70 269.6 156 76.3
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 2.7e-64 250.0 352 41.8
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 7.7e-59 231.9 128 78.9
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 2.5e-57 226.9 227 54.2
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 5.5e-57 225.7 126 76.2
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 1.0e-50 204.9 258 45.3
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.0e-50 204.9 258 45.3
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 2.0e-38 164.1 123 57.7
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 9.7e-38 161.8 202 49.0
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 8.2e-37 158.7 149 54.4
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 1.1e-36 158.3 192 47.4
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 1.1e-36 158.3 192 47.4
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 6.5e-34 149.1 82 79.3
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 5.0e-26 122.9 75 72.0
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.3e-21 108.2 145 44.1
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 3.7e-21 106.7 119 49.6
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 1.2e-16 91.7 191 31.9
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 4.7e-16 89.7 123 47.2
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 6.6e-10 69.3 116 38.8


User provided reference genes

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