Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 5.5e-75 284.3 148 100.0
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 1.1e-70 270.0 148 95.9
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 5.0e-68 261.2 148 91.2
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 7.2e-67 257.3 148 88.5
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 2.2e-63 245.7 148 83.8
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 8.5e-52 207.2 148 73.0
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 8.5e-52 207.2 148 73.0
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 1.5e-51 206.5 148 73.0
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 4.7e-50 201.4 149 71.8
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 4.7e-50 201.4 149 71.1
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 4.0e-49 198.4 148 67.6
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 1.2e-48 196.8 148 70.3
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 1.2e-48 196.8 148 70.9
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 2.0e-48 196.1 148 68.2
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 2.6e-48 195.7 148 68.9
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.3e-47 193.4 148 68.2
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 8.3e-47 190.7 148 65.5
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 1.4e-46 189.9 148 66.2
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 1.4e-46 189.9 147 67.3
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 3.1e-46 188.7 151 67.5
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 3.1e-46 188.7 148 66.2
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 3.1e-46 188.7 148 66.2
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 1.2e-45 186.8 151 66.2
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 1.2e-45 186.8 148 65.5
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 2.0e-45 186.0 151 67.5
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 2.7e-45 185.7 152 67.1
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 2.7e-45 185.7 151 64.9
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 1.0e-44 183.7 151 64.9
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.3e-44 183.3 148 67.6
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 2.3e-44 182.6 152 66.4
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 2.9e-44 182.2 148 67.6
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.8e-44 181.8 148 66.9
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 3.8e-44 181.8 148 66.9
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 5.0e-44 181.4 152 63.8
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 5.0e-44 181.4 151 64.2
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.1e-43 180.3 148 62.8
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 1.1e-43 180.3 151 64.2
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 3.3e-43 178.7 151 64.2
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.3e-43 178.7 148 65.5
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.3e-43 178.7 148 65.5
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.3e-43 178.7 148 65.5
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.3e-43 178.7 148 65.5
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.3e-43 178.7 148 65.5
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.2e-43 178.3 148 65.5
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 4.2e-43 178.3 151 64.9
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 4.2e-43 178.3 148 64.9
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 5.5e-43 177.9 148 62.2
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 5.5e-43 177.9 148 62.2
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 5.5e-43 177.9 151 63.6
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.5e-43 177.2 148 64.9
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.2e-42 176.8 148 64.9
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.1e-42 176.0 150 60.7
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 2.1e-42 176.0 151 64.2
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 2.8e-42 175.6 150 66.0
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.7e-42 174.9 148 64.2
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 8.0e-42 174.1 137 68.6
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 3.0e-41 172.2 149 61.1
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 3.0e-41 172.2 177 55.4
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 6.8e-41 171.0 148 63.5
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 1.5e-40 169.9 146 62.3
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 1.5e-40 169.9 146 62.3
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 2.0e-40 169.5 148 62.8
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 3.4e-40 168.7 145 60.7
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 4.4e-40 168.3 146 60.3
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 1.3e-39 166.8 146 60.3
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.7e-39 166.4 145 62.1
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 2.8e-39 165.6 150 61.3
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 6.3e-39 164.5 148 61.5
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 8.3e-39 164.1 146 59.6
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 1.1e-38 163.7 145 60.0
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 3.1e-38 162.2 145 59.3
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 3.1e-38 162.2 145 59.3
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 3.1e-38 162.2 145 59.3
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 3.1e-38 162.2 145 59.3
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 3.1e-38 162.2 145 59.3
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 3.1e-38 162.2 145 59.3
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 4.1e-38 161.8 150 59.3
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 4.1e-38 161.8 148 61.5
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 5.4e-38 161.4 145 58.6
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.2e-37 160.2 150 58.0
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 1.2e-37 160.2 149 60.4
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 1.6e-37 159.8 145 58.6
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 2.0e-37 159.5 145 58.6
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 2.7e-37 159.1 147 60.5
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 3.5e-37 158.7 145 57.9
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 3.5e-37 158.7 149 63.8
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 1.3e-36 156.8 148 60.1
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 1.7e-36 156.4 150 58.7
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 1.7e-36 156.4 150 58.7
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 5.0e-36 154.8 153 56.2
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 2.5e-35 152.5 148 58.1
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 2.5e-35 152.5 159 54.1
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 2.5e-35 152.5 150 58.0
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 3.3e-35 152.1 148 57.4
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 5.6e-35 151.4 148 54.7
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 7.3e-35 151.0 150 56.0
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 7.3e-35 151.0 148 54.1
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 9.5e-35 150.6 162 51.2
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 2.1e-34 149.4 148 58.1
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 2.8e-34 149.1 131 62.6
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 3.6e-34 148.7 148 57.4
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 4.7e-34 148.3 153 56.2
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.0e-34 147.5 127 64.6
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 8.0e-34 147.5 164 53.0
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 1.8e-33 146.4 162 54.9
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 3.0e-33 145.6 145 55.9
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 2.6e-32 142.5 148 53.4
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 4.4e-32 141.7 154 53.2
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 5.8e-32 141.4 193 44.0
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 7.5e-32 141.0 184 48.9
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.9e-31 138.3 121 63.6
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 4.9e-31 138.3 139 59.7
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 6.4e-31 137.9 153 51.6
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 8.3e-31 137.5 186 47.3
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 2.4e-30 136.0 121 61.2
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 2.7e-29 132.5 195 45.1
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 6.0e-29 131.3 148 51.4
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.3e-28 130.2 130 56.9
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 5.0e-28 128.3 149 52.3
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 3.3e-27 125.6 133 54.9
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 3.6e-26 122.1 154 48.1
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 1.2e-24 117.1 127 52.0
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 2.0e-24 116.3 171 47.4
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 3.4e-24 115.5 123 56.9
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 9.2e-22 107.5 123 50.4
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 4.6e-21 105.1 94 62.8
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 8.6e-20 100.9 96 58.3
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.4e-17 93.6 119 52.1
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.4e-17 93.6 68 66.2
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.4e-17 93.6 79 67.1
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 2.2e-15 86.3 149 34.2
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 1.1e-14 84.0 95 53.7
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 1.1e-14 84.0 95 50.5
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 4.1e-14 82.0 82 61.0
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 2.1e-13 79.7 59 71.2
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 2.1e-13 79.7 95 48.4
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 2.7e-13 79.3 59 69.5
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 2.7e-13 79.3 150 34.7
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.7e-12 76.6 75 61.3
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 2.3e-12 76.3 151 34.4
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 1.9e-11 73.2 50 70.0
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 2.8e-10 69.3 67 61.2
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 8.1e-10 67.8 80 50.0
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 1.5e-08 63.5 132 40.2
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.3e-07 60.5 59 52.5
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 1.3e-07 60.5 153 30.1


User provided reference genes

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