Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017007.2 Cucumis melo HOM05D000894 ORTHO05D025085 5.0e-94 347.8 183 100.0
CsaV3_4G037090 Cucumis sativus L. HOM05D000894 ORTHO05D025085 2.2e-89 332.4 183 96.2
ClCG05G015230 Citrullus lanatus HOM05D000894 ORTHO05D025085 2.5e-77 292.4 180 86.7
Sed0019083 Sechium edule HOM05D000894 ORTHO05D025085 2.8e-68 262.3 182 75.3
Sed0010812 Sechium edule HOM05D000894 ORTHO05D025085 6.2e-68 261.2 183 77.6
ClCG05G015220 Citrullus lanatus HOM05D000894 ORTHO05D002325 9.0e-35 151.0 122 71.3
MELO3C017008.2 Cucumis melo HOM05D000894 ORTHO05D002325 7.6e-34 147.9 112 72.3
CsaV3_4G037100 Cucumis sativus L. HOM05D000894 ORTHO05D002325 9.9e-34 147.5 112 72.3
Sed0000145 Sechium edule HOM05D000894 ORTHO05D002325 5.1e-30 135.2 113 67.3
Sed0000541 Sechium edule HOM05D000894 ORTHO05D002325 4.8e-28 128.6 112 64.3
Cfa014035 Carpinus fangiana HOM05D000894 ORTHO05D002325 1.3e-25 120.6 118 56.8
Dinv39574 Davidia involucrata HOM05D000894 ORTHO05D002325 8.4e-25 117.9 122 55.7
Thhalv10003631m.g Eutrema salsugineum HOM05D000894 ORTHO05D002325 4.2e-24 115.5 119 58.0
AT5G42220 Arabidopsis thaliana HOM05D000894 ORTHO05D002325 1.2e-23 114.0 119 57.1
BraA09t37568Z Brassica rapa HOM05D000894 ORTHO05D002325 1.2e-23 114.0 117 56.4
Carub.0008s0704 Capsella rubella HOM05D000894 ORTHO05D002325 1.2e-23 114.0 117 55.6
BcaC04g22008 Brassica carinata HOM05D000894 ORTHO05D002325 3.5e-23 112.5 117 55.6
BolC9t55382H Brassica oleracea HOM05D000894 ORTHO05D002325 3.5e-23 112.5 117 55.6
Prupe.1G356800 Prunus persica HOM05D000894 ORTHO05D002325 3.5e-23 112.5 117 52.1
RcHm_v2.0_Chr6g0303971 Rosa chinensis HOM05D000894 ORTHO05D002325 4.6e-23 112.1 118 53.4
AL8G19490 Arabidopsis lyrata HOM05D000894 ORTHO05D002325 6.0e-23 111.7 117 55.6
A09p19540 Brassica napus HOM05D000894 ORTHO05D002325 1.3e-22 110.5 117 55.6
BcaB07g31087 Brassica carinata HOM05D000894 ORTHO05D002325 1.8e-22 110.2 117 54.7
QL02p013593 Quercus lobata HOM05D000894 ORTHO05D002325 1.8e-22 110.2 120 50.8
CARHR184490 Cardamine hirsuta HOM05D000894 ORTHO05D002325 2.3e-22 109.8 117 53.8
FvH4_2g37770 Fragaria vesca HOM05D000894 ORTHO05D002325 2.3e-22 109.8 118 52.5
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.3e-22 109.8 118 52.5
Thecc.08G055200 Theobroma cacao HOM05D000894 ORTHO05D002325 3.0e-22 109.4 104 56.7
Rhsim06G0009500 Rhododendron simsii HOM05D000894 ORTHO05D002325 5.1e-22 108.6 122 50.8
FAN15G0127 Fragaria x ananassa HOM05D000894 ORTHO05D002325 6.7e-22 108.2 118 51.7
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 6.7e-22 108.2 118 51.7
PSO675G7487 Papaver somniferum HOM05D000894 ORTHO05D002325 8.7e-22 107.8 104 55.8
Atru.chr13.174 Acer truncatum HOM05D000894 ORTHO05D002325 1.9e-21 106.7 94 59.6
CiPaw.08G071200 Carya illinoinensis HOM05D000894 ORTHO05D002325 1.9e-21 106.7 120 52.5
MD15G1004200 Malus domestica HOM05D000894 ORTHO05D002325 1.9e-21 106.7 117 49.6
Ciclev10000172m.g Citrus clementina HOM05D000894 ORTHO05D002325 2.5e-21 106.3 122 50.0
PSO541G1981 Papaver somniferum HOM05D000894 ORTHO05D002325 2.5e-21 106.3 104 54.8
CiPaw.07G141400 Carya illinoinensis HOM05D000894 ORTHO05D002325 4.3e-21 105.5 117 53.0
THA.LOC104809699 Tarenaya hassleriana HOM05D000894 ORTHO05D002325 4.3e-21 105.5 100 57.0
TAR625G0558 Trochodendron aralioides HOM05D000894 ORTHO05D002325 4.3e-21 105.5 120 48.3
Nn5g30896 Nelumbo nucifera HOM05D000894 ORTHO05D002325 5.6e-21 105.1 161 42.9
Haze_22740 Corylus avellana HOM05D000894 ORTHO05D002325 7.4e-21 104.8 148 45.3
COL.COLO4_21614 Corchorus olitorius HOM05D000894 ORTHO05D002325 9.6e-21 104.4 137 48.2
MD08G1004700 Malus domestica HOM05D000894 ORTHO05D002325 9.6e-21 104.4 117 48.7
GSVIVG01029432001 Vitis vinifera HOM05D000894 ORTHO05D002325 1.6e-20 103.6 99 54.5
PGR083G1464 Punica granatum HOM05D000894 ORTHO05D002325 2.1e-20 103.2 112 51.8
Gorai.009G268000 Gossypium raimondii HOM05D000894 ORTHO05D002325 2.8e-20 102.8 95 56.8
CANSAT25G1636 Cannabis sativa HOM05D000894 ORTHO05D002325 3.7e-20 102.4 122 47.5
TWI56G0050 Tripterygium wilfordii HOM05D000894 ORTHO05D002325 6.2e-20 101.7 104 55.8
Aa31LG9G12370 Aethionema arabicum HOM05D000894 ORTHO05D002325 1.1e-19 100.9 118 52.5
Manes.05G140700 Manihot esculenta HOM05D000894 ORTHO05D002325 1.1e-19 100.9 122 49.2
Potri.005G247900 Populus trichocarpa HOM05D000894 ORTHO05D002325 1.4e-19 100.5 119 51.3
TAR381G0735 Trochodendron aralioides HOM05D000894 ORTHO05D002325 1.8e-19 100.1 120 47.5
MSTRG.1129 Avicennia marina HOM05D000894 ORTHO05D002325 2.4e-19 99.8 122 46.7
Gohir.D05G256500 Gossypium hirsutum HOM05D000894 ORTHO05D002325 2.4e-19 99.8 95 55.8
Phvul.001G001400 Phaseolus vulgaris HOM05D000894 ORTHO05D002325 2.4e-19 99.8 121 47.9
Sc02g0008970 Simmondsia chinensis HOM05D000894 ORTHO05D002325 2.4e-19 99.8 92 56.5
Actinidia15476 Actinidia chinensis HOM05D000894 ORTHO05D002325 3.1e-19 99.4 122 47.5
Gohir.A05G254900 Gossypium hirsutum HOM05D000894 ORTHO05D002325 3.1e-19 99.4 95 55.8
CSS0030543 Camellia sinensis var. sinensis HOM05D000894 ORTHO05D002325 5.3e-19 98.6 122 50.0
Cpa.g.sc26.231 Carica papaya HOM05D000894 ORTHO05D002325 5.3e-19 98.6 95 56.8
Duzib041G0349 Durio zibethinus HOM05D000894 ORTHO05D002325 6.9e-19 98.2 104 52.9
ECA233G1071 Erigeron canadensis HOM05D000894 ORTHO05D002325 6.9e-19 98.2 119 52.1
Oeu025003.4 Olea europaea HOM05D000894 ORTHO05D002325 6.9e-19 98.2 122 48.4
Aqoxy3G00355 Aquilegia oxysepala HOM05D000894 ORTHO05D002325 9.0e-19 97.8 120 46.7
AUR62013832 Chenopodium quinoa HOM05D000894 ORTHO05D002325 1.5e-18 97.1 106 55.7
Gohir.A05G181200 Gossypium hirsutum HOM05D000894 ORTHO05D002325 1.5e-18 97.1 95 54.7
Medtr1g026290 Medicago truncatula HOM05D000894 ORTHO05D002325 1.5e-18 97.1 119 47.1
Nitab4.5_0000588g0330 Nicotiana tabacum HOM05D000894 ORTHO05D002325 2.0e-18 96.7 122 45.9
Hund05131 Selenicereus undatus HOM05D000894 ORTHO05D002325 2.0e-18 96.7 92 57.6
Potri.002G013500 Populus trichocarpa HOM05D000894 ORTHO05D002325 2.6e-18 96.3 95 55.8
Sabra02G0010500 Salix brachista HOM05D000894 ORTHO05D002325 2.6e-18 96.3 91 59.3
arahy.Tifrunner.gnm1.ann1.LYL18I Arachis hypogaea HOM05D000894 ORTHO05D002325 4.5e-18 95.5 145 40.0
arahy.Tifrunner.gnm1.ann1.W1R3NJ Arachis hypogaea HOM05D000894 ORTHO05D002325 4.5e-18 95.5 145 40.0
AUR62036772 Chenopodium quinoa HOM05D000894 ORTHO05D002325 4.5e-18 95.5 95 56.8
Lalb_Chr03g0033601 Lupinus albus HOM05D000894 ORTHO05D002325 4.5e-18 95.5 101 51.5
Sabra05G0191600 Salix brachista HOM05D000894 ORTHO05D002325 4.5e-18 95.5 98 54.1
CSS0020420 Camellia sinensis var. sinensis HOM05D000894 ORTHO05D002325 5.8e-18 95.1 119 48.7
Cc10_g00880 Coffea canephora HOM05D000894 ORTHO05D002325 1.0e-17 94.4 120 46.7
Glyma.17G261600 Glycine max HOM05D000894 ORTHO05D002325 1.0e-17 94.4 130 45.4
HanXRQChr02g0048881 Helianthus annuus HOM05D000894 ORTHO05D002325 1.7e-17 93.6 115 49.6
Glyma.14G223100 Glycine max HOM05D000894 ORTHO05D002325 2.9e-17 92.8 121 47.1
Lj4C803T7 Lonicera japonica HOM05D000894 ORTHO05D002325 2.9e-17 92.8 116 47.4
Lalb_Chr19g0131691 Lupinus albus HOM05D000894 ORTHO05D002325 2.9e-17 92.8 101 47.5
Oeu046333.2 Olea europaea HOM05D000894 ORTHO05D002325 2.9e-17 92.8 122 46.7
Psat6g000200 Pisum sativum HOM05D000894 ORTHO05D002325 2.9e-17 92.8 119 44.5
Gorai.009G189700 Gossypium raimondii HOM05D000894 ORTHO05D002325 3.8e-17 92.4 95 51.6
Lalb_Chr01g0008391 Lupinus albus HOM05D000894 ORTHO05D002325 4.9e-17 92.0 102 49.0
Peaxi162Scf00174g00159 Petunia axillaris HOM05D000894 ORTHO05D002325 4.9e-17 92.0 122 45.9
HanXRQChr06g0165771 Helianthus annuus HOM05D000894 ORTHO05D002325 6.5e-17 91.7 119 48.7
Gohir.D05G184200 Gossypium hirsutum HOM05D000894 ORTHO05D002325 8.4e-17 91.3 95 50.5
Lj5g0012630 Lotus japonicus HOM05D000894 ORTHO05D002325 8.4e-17 91.3 91 53.8
Ca_13492_v3 Cicer arietinum L. HOM05D000894 ORTHO05D002325 1.1e-16 90.9 112 45.5
TPR.G26410 Trifolium pratense HOM05D000894 ORTHO05D002325 1.1e-16 90.9 119 42.9
arahy.Tifrunner.gnm1.ann1.U1RN9D Arachis hypogaea HOM05D000894 ORTHO05D002325 1.4e-16 90.5 104 46.2
EL10Ac1g02026 Beta vulgaris HOM05D000894 ORTHO05D002325 2.5e-16 89.7 92 54.3
Duzib093G2095 Durio zibethinus HOM05D000894 ORTHO05D002325 2.5e-16 89.7 95 52.6
Psat5g002040 Pisum sativum HOM05D000894 ORTHO05D002325 2.5e-16 89.7 119 42.9
Solyc04g082160.4 Solanum lycopersicum HOM05D000894 ORTHO05D002325 4.2e-16 89.0 100 49.0
Sopen04g035790 Solanum pennellii HOM05D000894 ORTHO05D002325 4.2e-16 89.0 100 49.0
CAN.G311.95 Capsicum annuum HOM05D000894 ORTHO05D002325 9.3e-16 87.8 97 48.5
HanXRQChr17g0533381 Helianthus annuus HOM05D000894 ORTHO05D002325 9.3e-16 87.8 122 43.4
SGA_v2.0_scaffold19G08600 Striga asiatica HOM05D000894 ORTHO05D002325 1.2e-15 87.4 119 42.9
SGA_v2.0_scaffold25G11192 Striga asiatica HOM05D000894 ORTHO05D002325 1.2e-15 87.4 118 44.1
MBI08_g26493_MAGBIO Magnolia biondii HOM05D000894 ORTHO05D002325 1.6e-15 87.0 165 41.2
DCAR_013900 Daucus carota HOM05D000894 ORTHO05D002325 2.7e-15 86.3 120 45.0
Migut.N03195 Erythranthe guttata HOM05D000894 ORTHO05D002325 2.7e-15 86.3 119 45.4
ECA246G4835 Erigeron canadensis HOM05D000894 ORTHO05D002325 3.5e-15 85.9 125 43.2
Eucgr.F01713 Eucalyptus grandis HOM05D000894 ORTHO05D002325 3.5e-15 85.9 114 47.4
PGSC0003DMG400009894 Solanum tuberosum HOM05D000894 ORTHO05D002325 1.0e-14 84.3 100 47.0
Psat7g195400 Pisum sativum HOM05D000894 ORTHO05D002325 2.3e-14 83.2 111 45.0
Ah.11g040680 Amaranthus hybridus HOM05D000894 ORTHO05D002325 3.0e-14 82.8 95 48.4
Hma1.2p1_1260F.1_g271030 Hydrangea macrophylla HOM05D000894 ORTHO05D002325 3.9e-14 82.4 116 44.0
Lsat_1_v5_gn_3_7681 Lactuca sativa HOM05D000894 ORTHO05D002325 5.1e-14 82.0 120 42.5
HPP92_026892 Vanilla planifolia HOM05D000894 ORTHO05D002325 2.5e-13 79.7 82 47.6
CDE02G0614 Ceratophyllum demersum HOM05D000894 ORTHO05D002325 7.4e-13 78.2 123 39.8
Lsat_1_v5_gn_8_119281 Lactuca sativa HOM05D000894 ORTHO05D002325 7.4e-13 78.2 102 48.0
HPP92_003494 Vanilla planifolia HOM05D000894 ORTHO05D002325 7.4e-13 78.2 82 46.3
CDE09G0453 Ceratophyllum demersum HOM05D000894 ORTHO05D002325 6.3e-12 75.1 89 44.9
unitig_32.g11246 Utricularia gibba HOM05D000894 ORTHO05D002325 1.4e-11 73.9 96 45.8
ATR0661G248 Amborella trichopoda HOM05D000894 ORTHO05D002325 4.5e-10 68.9 89 42.7
Zm00001eb198450 Zea mays HOM05D000894 ORTHO05D002325 2.9e-09 66.2 119 35.3
SHI08006 Sapria himalayana HOM05D000894 ORTHO05D002325 9.4e-08 61.2 92 37.0
MSTRG.1732 Avicennia marina HOM05D000894 ORTHO05D002325 1.6e-07 60.5 89 39.3
Mapoly0067s0004 Marchantia polymorpha HOM05D000894 ORTHO05D002325 1.6e-07 60.5 99 38.4
Potri.006G059700 Populus trichocarpa HOM05D000894 ORTHO05D002325 1.6e-07 60.5 101 37.6
vmacro21837 Vaccinium macrocarpon HOM05D000894 ORTHO05D002325 1.6e-07 60.5 70 38.6
Dinv31914 Davidia involucrata HOM05D000894 ORTHO05D002325 4.6e-07 58.9 71 38.0
Pp3c1_29440 Physcomitrium patens HOM05D000894 ORTHO05D002325 4.6e-07 58.9 109 35.8
SGA_v2.0_scaffold163G37960 Striga asiatica HOM05D000894 ORTHO05D002325 4.6e-07 58.9 76 42.1
vmacro11206 Vaccinium macrocarpon HOM05D000894 ORTHO05D002325 1.0e-06 57.8 84 35.7
CSS0044890 Camellia sinensis var. sinensis HOM05D000894 ORTHO05D002325 3.9e-06 55.8 69 39.1
Migut.E01818 Erythranthe guttata HOM05D000894 ORTHO05D002325 3.9e-06 55.8 107 32.7
Rhsim02G0205100 Rhododendron simsii HOM05D000894 ORTHO05D002325 3.9e-06 55.8 84 34.5
Glyma.17G106000 Glycine max HOM05D000894 ORTHO05D002325 6.7e-06 55.1 89 33.7
Psat4g035360 Pisum sativum HOM05D000894 ORTHO05D002325 6.7e-06 55.1 108 28.7
Ca_21622_v3 Cicer arietinum L. HOM05D000894 ORTHO05D002325 8.8e-06 54.7 108 30.6


User provided reference genes

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