Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 8.3e-267 923.3 529 100.0
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 2.4e-258 895.2 529 96.6
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 2.4e-237 825.5 529 89.8
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 2.2e-198 696.0 553 76.3
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 6.3e-198 694.5 528 70.3
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 1.4e-197 693.3 517 78.3
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 1.4e-197 693.3 517 78.9
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 7.0e-197 691.0 530 77.2
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 9.1e-197 690.6 522 70.7
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 9.1e-197 690.6 523 68.3
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 4.5e-196 688.3 530 76.8
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 5.9e-196 688.0 530 76.8
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 7.7e-196 687.6 523 78.6
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 2.2e-195 686.0 531 77.4
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 2.9e-195 685.6 524 67.4
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 8.5e-195 684.1 528 67.2
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 2.5e-194 682.6 530 76.8
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 8.0e-193 677.6 528 70.5
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 1.8e-192 676.4 544 69.5
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 1.2e-191 673.7 532 66.4
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 4.4e-191 671.8 552 68.7
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 5.7e-191 671.4 532 65.6
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 8.2e-190 667.5 524 67.0
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 4.1e-189 665.2 520 76.0
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 7.7e-188 661.0 523 66.2
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 1.1e-186 657.1 522 65.9
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 1.5e-186 656.8 532 63.9
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 6.8e-184 647.9 547 72.6
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 7.5e-183 644.4 521 64.1
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 2.2e-182 642.9 529 67.7
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 3.7e-182 642.1 524 64.5
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 3.7e-182 642.1 524 64.5
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 1.4e-181 640.2 524 64.1
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 7.0e-181 637.9 532 71.4
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 7.0e-181 637.9 532 71.4
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.6e-180 636.7 548 70.8
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 1.3e-179 633.6 549 70.9
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 1.7e-179 633.3 529 64.8
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 2.9e-179 632.5 533 70.0
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 6.5e-179 631.3 549 70.7
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 4.7e-177 625.2 548 70.6
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 9.8e-175 617.5 528 69.7
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 1.3e-174 617.1 534 63.9
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 4.9e-174 615.1 527 64.5
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 4.9e-174 615.1 518 71.4
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 6.3e-174 614.8 533 62.3
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 1.1e-173 614.0 528 61.4
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 5.4e-173 611.7 522 61.5
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 5.4e-173 611.7 522 61.5
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 5.4e-173 611.7 527 61.7
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 2.7e-172 609.4 531 60.3
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 2.3e-171 606.3 533 70.0
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 3.8e-171 605.5 528 62.9
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 5.0e-171 605.1 528 62.5
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 1.9e-170 603.2 514 70.8
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 1.6e-169 600.1 533 60.0
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 4.7e-169 598.6 526 60.1
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.4e-168 597.0 528 62.1
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 1.2e-167 594.0 526 68.6
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 1.5e-167 593.6 522 59.0
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 7.5e-167 591.3 526 59.1
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 4.1e-165 585.5 530 60.4
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 7.0e-165 584.7 526 58.6
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 9.2e-165 584.3 494 69.8
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 4.6e-164 582.0 480 61.7
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 1.7e-163 580.1 527 60.5
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 4.3e-162 575.5 529 57.8
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 1.2e-161 573.9 525 66.7
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 1.5e-159 567.0 524 67.2
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 2.0e-159 566.6 528 59.7
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 4.4e-159 565.5 529 66.5
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 7.5e-159 564.7 522 57.3
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 9.8e-159 564.3 525 65.9
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 9.8e-159 564.3 530 56.6
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 4.9e-158 562.0 524 66.4
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 6.4e-158 561.6 527 56.7
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 1.4e-157 560.5 526 65.4
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 4.1e-157 558.9 547 56.1
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 9.2e-157 557.8 526 56.3
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 2.0e-156 556.6 522 66.3
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 3.0e-155 552.7 533 56.3
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 6.6e-155 551.6 528 65.5
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 7.3e-154 548.1 537 55.3
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 3.6e-153 545.8 522 64.8
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 4.7e-153 545.4 533 55.7
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 3.1e-152 542.7 535 55.9
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 6.8e-152 541.6 533 55.5
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 3.4e-151 539.3 533 55.7
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 4.4e-151 538.9 532 55.6
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 7.1e-149 531.6 534 54.9
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 3.5e-148 529.3 534 54.1
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 9.5e-146 521.2 518 63.1
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 1.4e-144 517.3 518 62.9
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 2.4e-144 516.5 529 63.5
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 1.2e-143 514.2 523 61.8
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 4.9e-142 508.8 529 54.3
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 1.6e-140 503.8 542 60.5
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 1.3e-139 500.7 530 50.6
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 8.4e-134 481.5 502 60.6
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 1.4e-133 480.7 324 74.1
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 3.2e-133 479.6 528 51.1
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 2.3e-131 473.4 520 51.2
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 4.8e-129 465.7 520 52.5
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 1.2e-116 424.5 524 49.4
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 3.0e-115 419.9 522 46.2
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 1.1e-104 384.8 540 43.9
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 1.8e-104 384.0 534 43.4
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 7.4e-98 362.1 407 54.5
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 2.3e-91 340.5 520 51.3
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 2.0e-90 337.4 382 62.0
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 3.2e-85 320.1 276 59.8
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 7.2e-85 318.9 516 45.3
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 5.9e-79 299.3 529 44.8
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 3.8e-78 296.6 514 40.1
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 1.5e-69 268.1 331 42.9
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 4.0e-67 260.0 303 48.8
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 4.1e-64 250.0 506 33.6
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 3.7e-49 200.3 223 51.6
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 7.3e-45 186.0 528 27.3
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 2.1e-44 184.5 403 31.3
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 4.0e-43 180.3 303 38.3
PGSC0003DMG400036093 Solanum tuberosum HOM05D005544 ORTHO05D007303 1.0e-38 165.6 101 76.2
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 3.5e-31 140.6 100 71.0
C04p71990 Brassica napus HOM05D002853 ORTHO05D003030 2.5e-29 134.4 129 54.3
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 2.4e-27 127.9 491 28.5
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 5.2e-27 126.7 178 41.6
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 5.2e-27 126.7 222 38.3
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 2.6e-26 124.4 119 54.6
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 2.3e-22 111.3 157 45.2
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 3.3e-21 107.5 163 42.9
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 1.5e-18 98.6 143 42.0
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 2.9e-17 94.4 70 68.6
CAN.G111.2 Capsicum annuum HOM05D000002 ORTHO05D000001 3.5e-15 87.4 67 64.2
Nn3g19125 Nelumbo nucifera HOM05D005544 ORTHO05D007303 3.6e-12 77.4 57 66.7
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 9.3e-08 62.8 101 40.6
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 2.7e-07 61.2 102 38.2
SEGI_41146 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 3.5e-07 60.8 71 43.7
unitig_749.g13526 Utricularia gibba HOM05D000684 ORTHO05D000688 2.3e-06 58.2 236 23.7
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 5.1e-06 57.0 101 37.6


User provided reference genes

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