Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 2.5e-220 768.5 378 100.0
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 5.0e-213 744.2 378 96.3
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 7.4e-201 703.7 375 92.0
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 1.5e-172 609.8 376 79.8
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 5.2e-154 548.1 377 71.9
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 1.2e-153 547.0 374 71.1
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 1.7e-152 543.1 375 71.2
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 1.7e-152 543.1 375 71.2
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 1.7e-152 543.1 375 71.2
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 3.7e-152 542.0 375 71.2
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 6.4e-152 541.2 374 71.4
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 1.1e-151 540.4 376 70.5
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 1.1e-151 540.4 375 70.9
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 2.4e-151 539.3 375 70.1
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 2.7e-150 535.8 375 69.6
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 3.5e-150 535.4 375 68.5
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 3.5e-150 535.4 376 68.9
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 4.6e-150 535.0 375 69.3
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 6.0e-150 534.6 376 70.5
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 6.0e-150 534.6 377 70.0
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 1.0e-149 533.9 377 70.0
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 1.3e-149 533.5 375 69.3
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 1.3e-149 533.5 377 69.5
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 1.7e-149 533.1 376 70.2
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 2.3e-149 532.7 384 69.0
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 2.3e-149 532.7 377 69.5
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 5.0e-149 531.6 377 70.0
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 8.6e-149 530.8 376 68.6
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 1.5e-148 530.0 375 69.1
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 4.3e-148 528.5 375 68.5
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 5.6e-148 528.1 376 68.1
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 9.5e-148 527.3 376 68.6
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 2.1e-147 526.2 377 69.0
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 2.8e-147 525.8 376 68.1
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 3.6e-147 525.4 371 71.4
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 4.7e-147 525.0 377 69.2
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 1.4e-146 523.5 377 69.5
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 5.2e-146 521.5 378 68.5
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 6.8e-146 521.2 376 67.3
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 8.9e-146 520.8 376 68.9
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 8.9e-146 520.8 375 67.2
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 4.4e-145 518.5 375 68.5
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.3e-144 516.9 377 68.7
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 3.2e-143 512.3 376 65.2
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 3.2e-143 512.3 376 67.6
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 7.1e-143 511.1 377 69.0
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 1.6e-142 510.0 373 66.2
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 2.1e-142 509.6 376 67.6
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 2.7e-142 509.2 375 66.7
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 6.0e-142 508.1 362 69.9
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 6.0e-142 508.1 365 68.5
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 7.8e-142 507.7 375 66.4
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 1.3e-141 506.9 377 63.9
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 1.7e-141 506.5 377 64.7
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 2.3e-141 506.1 375 65.1
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 2.3e-141 506.1 375 66.4
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 1.1e-140 503.8 376 65.4
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 1.1e-140 503.8 379 65.4
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 1.5e-140 503.4 376 65.2
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 3.3e-140 502.3 376 64.9
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 7.3e-140 501.1 376 66.5
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 9.5e-140 500.7 376 67.3
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 9.5e-140 500.7 377 64.5
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 9.5e-140 500.7 377 64.7
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 3.6e-139 498.8 376 67.0
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 4.7e-139 498.4 390 65.6
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 8.1e-139 497.7 379 62.8
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 1.1e-138 497.3 376 66.5
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 1.1e-138 497.3 377 64.2
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 1.1e-138 497.3 376 65.4
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 2.3e-138 496.1 377 63.4
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 3.1e-138 495.7 377 62.3
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 6.8e-138 494.6 379 65.2
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 6.8e-138 494.6 379 65.2
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 3.4e-137 492.3 375 64.3
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 5.8e-137 491.5 375 62.9
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 1.3e-136 490.3 375 62.7
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 1.3e-136 490.3 375 62.4
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 1.7e-136 490.0 375 62.7
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 2.2e-136 489.6 375 62.7
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 2.2e-136 489.6 375 62.7
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 2.2e-136 489.6 375 63.7
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 3.8e-136 488.8 375 62.4
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.8e-136 488.8 370 66.5
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 4.9e-136 488.4 372 63.4
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 1.4e-135 486.9 375 62.9
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 2.4e-135 486.1 371 64.4
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 3.2e-135 485.7 375 62.9
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 9.2e-135 484.2 376 63.6
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 3.5e-134 482.3 375 62.7
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 3.5e-134 482.3 374 65.2
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 6.0e-134 481.5 357 65.8
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 7.8e-134 481.1 376 63.6
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 1.3e-133 480.3 373 64.9
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 2.3e-133 479.6 377 64.5
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 2.3e-133 479.6 373 65.1
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 5.1e-133 478.4 368 65.5
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 6.6e-133 478.0 369 63.4
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 6.6e-133 478.0 381 63.3
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 9.6e-132 474.2 401 59.4
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.6e-131 473.4 375 61.9
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 2.6e-129 466.1 390 61.0
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 5.8e-129 464.9 407 57.7
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 8.4e-128 461.1 405 57.0
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 1.4e-127 460.3 399 60.9
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 9.3e-127 457.6 456 54.6
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 4.6e-126 455.3 378 61.1
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 7.8e-126 454.5 378 61.1
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 8.1e-123 444.5 368 60.3
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 9.0e-122 441.0 376 59.3
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 1.7e-120 436.8 374 58.3
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 4.6e-118 428.7 376 57.7
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 6.0e-118 428.3 372 56.7
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 1.3e-117 427.2 370 57.3
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 7.4e-116 421.4 376 58.5
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 5.8e-113 411.8 375 56.3
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 3.8e-112 409.1 309 65.7
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 3.2e-111 406.0 405 52.8
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 7.1e-111 404.8 298 63.8
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 1.1e-108 397.5 307 66.1
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 4.2e-103 379.0 373 52.8
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 1.2e-102 377.5 367 51.5
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 1.8e-101 373.6 383 52.2
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 6.1e-86 322.0 262 61.8
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.8e-85 320.5 371 47.4
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 3.3e-84 316.2 461 40.6
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 6.5e-80 302.0 372 43.0
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 3.9e-77 292.7 249 57.8
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 1.5e-76 290.8 243 60.9
ATR0097G041 Amborella trichopoda HOM05D003501 ORTHO05D004388 3.1e-74 283.1 235 60.0
EL10As8g23847 Beta vulgaris HOM05D003501 ORTHO05D004388 2.0e-68 263.8 222 60.8
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 7.5e-68 261.9 376 39.4
CARHR191430 Cardamine hirsuta HOM05D003501 ORTHO05D004388 1.9e-63 247.3 161 71.4
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 1.8e-61 240.7 191 62.8
arahy.Tifrunner.gnm1.ann1.3N5Q80 Arachis hypogaea HOM05D003501 ORTHO05D004388 3.7e-59 233.0 260 51.2
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 8.3e-59 231.9 183 62.8
Prupe.6G112100 Prunus persica HOM05D003501 ORTHO05D004388 3.5e-57 226.5 370 38.1
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.5e-55 219.2 214 54.7
Phvul.002G299004 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 3.6e-54 216.5 176 60.2
ECA232G4075 Erigeron canadensis HOM05D003501 ORTHO05D004388 9.2e-50 201.8 205 54.1
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.6e-49 201.1 141 71.6
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.2e-41 174.9 176 50.0
CAN.G953.12 Capsicum annuum HOM05D003501 ORTHO05D004388 1.1e-39 168.3 127 63.8
HPP92_000027 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.3e-39 166.8 127 66.1
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.1e-37 161.8 161 50.3
Cfa022309 Carpinus fangiana HOM05D003501 ORTHO05D004388 1.8e-37 161.0 350 33.4
Lsat_1_v5_gn_2_70781 Lactuca sativa HOM05D003501 ORTHO05D004388 1.9e-34 151.0 119 64.7
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.5e-33 146.7 138 52.9
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.9e-32 143.3 138 52.2
EL10Ac2g02713 Beta vulgaris HOM05D003501 ORTHO05D004388 7.3e-31 139.0 101 64.4
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.6e-30 136.7 189 42.3
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.1e-29 135.2 138 50.0
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.5e-28 131.3 238 38.2
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 5.8e-28 129.4 133 54.1
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 1.2e-25 121.7 257 31.9
HPP92_028228 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.7e-25 120.6 83 68.7
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 7.8e-25 119.0 86 68.6
HPP92_000028 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.7e-24 117.9 83 66.3
SMO114G0139 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.2e-22 109.4 178 41.0
SMO163G0016 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.4e-20 103.6 110 50.9
Actinidia15652 Actinidia chinensis HOM05D003501 ORTHO05D004388 7.6e-20 102.4 70 68.6
Actinidia06069 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.9e-19 100.5 214 32.7
SMO269G0020 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.4e-19 99.4 94 53.2
Mapoly0071s0005 Marchantia polymorpha HOM05D003501 ORTHO05D018303 1.1e-18 98.6 385 25.5
SMO353G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.1e-18 96.7 258 29.8
CDE12G0385 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 3.5e-17 93.6 92 52.2
EL10Ac4g08784 Beta vulgaris HOM05D003501 ORTHO05D004388 3.0e-16 90.5 140 41.4
SMO265G0024 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.1e-16 89.7 109 44.0
MD11G1147100 Malus domestica HOM05D003501 ORTHO05D004388 1.9e-15 87.8 70 60.0
HPP92_000031 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.5e-15 87.4 89 55.1
Glyma.07G212600 Glycine max HOM05D003501 ORTHO05D004388 3.3e-15 87.0 56 69.6
HPP92_028227 Vanilla planifolia HOM05D003501 ORTHO05D004388 7.3e-15 85.9 70 60.0
HPP92_028030 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.6e-14 83.6 49 77.6
SMO146G0031 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.0e-13 80.1 109 43.1
Actinidia15651 Actinidia chinensis HOM05D003501 ORTHO05D004388 4.9e-11 73.2 68 52.9
SMO340G0317 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.4e-10 71.6 86 44.2
AL1G16300 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 1.9e-10 71.2 99 36.4
SMO364G0656 Selaginella moellendorffii HOM05D003501 ORTHO05D018303 1.9e-10 71.2 161 29.8
Lsat_1_v5_gn_6_85780 Lactuca sativa HOM05D003501 ORTHO05D004388 7.1e-10 69.3 69 50.7
SEGI_12129 Sequoiadendron giganteum HOM05D003501 ORTHO05D004388 1.2e-09 68.6 68 48.5
SMO194G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.5e-09 67.0 86 43.0
PRCOL_00003579 Prasinoderma coloniale HOM05D003501 ORTHO05D018303 7.8e-09 65.9 176 27.8
Actinidia23574 Actinidia chinensis HOM05D003501 ORTHO05D057363 1.3e-08 65.1 162 30.9
Lsat_1_v5_gn_2_114700 Lactuca sativa HOM05D003501 ORTHO05D004388 1.3e-08 65.1 69 49.3
AL2G16720 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 1.7e-08 64.7 77 44.2
HPP92_027916 Vanilla planifolia HOM05D003501 ORTHO05D004388 5.1e-08 63.2 53 62.3
QL93p1877_0036 Quercus lobata HOM05D003501 ORTHO05D004388 1.1e-07 62.0 54 59.3


User provided reference genes

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