Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 8.1e-169 597.0 315 100.0
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 1.2e-148 530.0 315 90.5
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 1.1e-146 523.5 315 90.2
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 6.7e-131 471.1 315 83.8
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 5.9e-119 431.4 307 79.8
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 1.0e-118 430.6 320 76.6
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 1.0e-118 430.6 316 75.9
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 3.2e-117 425.6 320 75.9
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 6.1e-116 421.4 319 74.0
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 6.1e-116 421.4 320 74.1
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 5.2e-115 418.3 320 75.6
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 1.2e-114 417.2 292 76.7
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 3.4e-114 415.6 316 70.9
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 3.4e-114 415.6 318 73.6
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 6.3e-113 411.4 278 81.7
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 1.1e-112 410.6 316 71.2
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 1.1e-112 410.6 320 72.8
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 3.1e-112 409.1 326 69.9
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 1.6e-111 406.8 319 71.8
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 3.5e-111 405.6 305 76.4
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 1.0e-110 404.1 309 72.5
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 5.0e-110 401.7 275 79.3
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 6.6e-110 401.4 311 73.6
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 6.6e-110 401.4 319 72.1
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 8.6e-110 401.0 304 73.0
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 3.3e-109 399.1 317 71.9
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 5.6e-109 398.3 327 67.6
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 2.8e-108 396.0 308 71.8
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 5.2e-107 391.7 318 69.2
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 8.9e-107 391.0 317 70.3
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 1.2e-106 390.6 316 71.2
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 1.2e-106 390.6 293 73.7
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 1.5e-106 390.2 318 67.0
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 2.0e-106 389.8 267 78.7
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 7.5e-106 387.9 305 71.8
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 9.8e-106 387.5 322 69.9
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 1.3e-105 387.1 315 67.3
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 1.3e-105 387.1 317 69.4
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 1.3e-105 387.1 320 66.9
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 6.4e-105 384.8 290 69.7
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 1.1e-104 384.0 303 72.6
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 1.8e-104 383.3 274 75.2
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 2.4e-104 382.9 279 71.3
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 2.4e-104 382.9 279 71.3
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 3.2e-104 382.5 299 70.2
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 4.1e-104 382.1 278 74.8
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 7.0e-104 381.3 290 71.7
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 9.2e-104 380.9 306 71.9
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 1.2e-103 380.6 302 68.9
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 2.7e-103 379.4 326 66.3
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 2.7e-103 379.4 311 67.5
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 3.5e-103 379.0 316 66.8
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 5.9e-103 378.3 300 68.3
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 5.9e-103 378.3 274 73.7
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 1.0e-102 377.5 313 69.6
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 1.3e-102 377.1 274 73.7
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 2.3e-102 376.3 300 72.0
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 3.0e-102 375.9 296 72.6
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 3.9e-102 375.6 278 73.4
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 6.6e-102 374.8 311 65.3
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 1.9e-101 373.2 253 79.8
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 1.9e-101 373.2 253 80.6
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 3.3e-101 372.5 274 71.2
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 3.3e-101 372.5 307 70.4
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 4.3e-101 372.1 315 65.4
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 1.6e-100 370.2 318 68.6
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 6.2e-100 368.2 322 65.2
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 6.2e-100 368.2 307 69.1
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 8.0e-100 367.9 315 66.3
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 5.2e-99 365.2 314 65.6
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 1.5e-98 363.6 293 68.3
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 1.5e-98 363.6 314 65.3
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 4.4e-98 362.1 318 66.7
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 2.2e-97 359.8 270 73.0
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 2.2e-97 359.8 275 69.5
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 3.2e-96 355.9 314 66.9
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 9.2e-96 354.4 298 67.1
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.2e-95 354.0 251 74.1
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 1.6e-95 353.6 316 65.2
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 2.0e-95 353.2 267 71.9
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 3.9e-94 349.0 319 63.6
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 1.5e-93 347.1 261 70.9
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 2.5e-93 346.3 282 66.3
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 3.3e-93 345.9 295 66.4
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 2.8e-92 342.8 399 52.6
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 3.6e-92 342.4 272 69.9
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 1.2e-90 337.4 228 73.7
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 1.5e-90 337.0 272 69.9
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 2.0e-90 336.7 287 69.0
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 2.2e-89 333.2 298 62.8
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 3.7e-89 332.4 228 75.4
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 3.7e-89 332.4 237 74.3
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 1.1e-88 330.9 270 66.7
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 5.4e-88 328.6 237 72.6
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 6.0e-87 325.1 268 62.7
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 5.1e-86 322.0 231 75.8
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 3.6e-84 315.8 253 66.8
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 8.1e-84 314.7 317 61.2
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 2.0e-82 310.1 296 61.8
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 1.3e-78 297.4 189 82.0
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 1.3e-78 297.4 234 70.5
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 1.5e-74 283.9 189 79.4
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 6.4e-73 278.5 291 58.4
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 8.7e-70 268.1 263 57.4
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 3.3e-69 266.2 200 71.0
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 2.8e-68 263.1 313 53.7
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 2.2e-65 253.4 263 58.6
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 7.1e-64 248.4 204 66.2
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 5.3e-59 232.3 255 48.2
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 3.2e-56 223.0 313 46.6
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 3.0e-54 216.5 255 49.8
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 9.0e-51 204.9 151 76.2
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 2.6e-50 203.4 192 56.8
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 1.8e-43 180.6 207 47.8
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 2.5e-40 170.2 131 67.2
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 3.3e-37 159.8 128 64.8
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 2.0e-34 150.6 104 79.8
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 5.5e-32 142.5 185 50.3
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 2.4e-27 127.1 120 59.2
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 4.5e-26 122.9 102 66.7
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 3.8e-25 119.8 242 36.4
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 6.7e-22 109.0 107 58.9
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.1e-16 91.7 82 64.6
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 1.9e-16 90.9 72 65.3
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 2.5e-16 90.5 70 61.4
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 9.4e-16 88.6 106 51.9
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 3.7e-12 76.6 65 67.7
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 2.7e-10 70.5 65 66.2
QL09p050966 Quercus lobata HOM05D001484 ORTHO05D001564 4.5e-10 69.7 35 80.0
Medtr1g072620 Medicago truncatula HOM05D006016 ORTHO05D007553 2.3e-06 57.4 51 62.7
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 4.0e-06 56.6 46 67.4


User provided reference genes

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