Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 5.3e-93 344.4 175 100.0
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 1.1e-71 273.5 175 81.7
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 3.7e-62 241.9 175 73.7
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 9.8e-47 190.7 176 61.9
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 1.2e-36 157.1 165 52.7
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 7.8e-36 154.5 165 51.5
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 2.9e-35 152.5 165 55.2
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 3.9e-35 152.1 170 51.8
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 3.3e-34 149.1 163 53.4
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 4.3e-34 148.7 170 52.4
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 4.3e-34 148.7 162 52.5
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 3.6e-33 145.6 163 53.4
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 4.7e-33 145.2 145 55.9
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 4.7e-33 145.2 164 51.8
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 4.7e-33 145.2 161 51.6
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 6.2e-33 144.8 153 51.0
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 2.3e-32 142.9 145 54.5
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 3.1e-32 142.5 136 57.4
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 3.1e-32 142.5 159 49.7
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 3.1e-32 142.5 145 53.8
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 4.0e-32 142.1 163 49.7
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 6.8e-32 141.4 161 51.6
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 8.9e-32 141.0 161 52.2
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 1.2e-31 140.6 169 50.9
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 1.2e-31 140.6 177 47.5
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.2e-31 140.6 136 56.6
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 1.5e-31 140.2 145 52.4
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.0e-31 139.8 168 49.4
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 2.6e-31 139.4 170 47.6
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 5.8e-31 138.3 165 49.1
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 5.8e-31 138.3 168 49.4
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 5.8e-31 138.3 161 49.1
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.7e-30 136.7 149 49.7
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 1.7e-30 136.7 139 51.1
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.7e-30 136.7 174 48.9
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 1.7e-30 136.7 156 51.9
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 2.9e-30 136.0 176 44.3
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 3.7e-30 135.6 162 48.8
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 3.7e-30 135.6 136 53.7
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 4.9e-30 135.2 136 50.7
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 6.4e-30 134.8 155 49.7
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 8.3e-30 134.4 164 47.6
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 8.3e-30 134.4 164 48.8
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 8.3e-30 134.4 141 51.8
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.1e-29 134.0 158 48.1
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 1.1e-29 134.0 143 51.7
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 1.1e-29 134.0 146 51.4
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.4e-29 133.7 139 51.1
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 3.2e-29 132.5 162 47.5
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 3.2e-29 132.5 163 51.5
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 5.4e-29 131.7 172 48.3
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 5.4e-29 131.7 162 45.7
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 5.4e-29 131.7 148 47.3
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 1.6e-28 130.2 155 47.1
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 2.0e-28 129.8 164 45.7
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 2.7e-28 129.4 161 50.9
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 4.6e-28 128.6 168 44.6
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 1.0e-27 127.5 183 42.6
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.7e-27 126.7 151 49.0
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.7e-27 126.7 142 47.2
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 1.7e-27 126.7 161 46.0
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 2.3e-27 126.3 156 48.1
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 3.0e-27 125.9 91 69.2
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 5.0e-27 125.2 105 58.1
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 6.6e-27 124.8 127 53.5
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 6.6e-27 124.8 136 50.0
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 8.6e-27 124.4 151 46.4
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.5e-26 123.6 156 49.4
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 1.9e-26 123.2 92 65.2
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 1.9e-26 123.2 142 46.5
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 1.9e-26 123.2 86 68.6
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 2.5e-26 122.9 93 65.6
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 2.5e-26 122.9 93 65.6
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 2.5e-26 122.9 177 45.2
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 4.3e-26 122.1 162 50.0
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 4.3e-26 122.1 173 44.5
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 5.6e-26 121.7 93 65.6
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 5.6e-26 121.7 177 43.5
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 7.3e-26 121.3 127 52.0
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 9.5e-26 120.9 160 47.5
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 9.5e-26 120.9 150 45.3
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 9.5e-26 120.9 162 45.7
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 1.6e-25 120.2 93 62.4
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 2.1e-25 119.8 158 48.7
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.8e-25 119.4 93 63.4
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 3.6e-25 119.0 136 46.3
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 4.7e-25 118.6 151 45.7
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 6.2e-25 118.2 175 42.9
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 1.4e-24 117.1 92 62.0
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 1.4e-24 117.1 159 47.8
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.8e-24 116.7 90 62.2
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.8e-24 116.7 92 62.0
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 4.0e-24 115.5 135 49.6
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 4.0e-24 115.5 93 62.4
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 5.2e-24 115.2 91 64.8
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 5.2e-24 115.2 104 56.7
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 6.8e-24 114.8 148 45.9
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 3.4e-23 112.5 93 64.5
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 4.4e-23 112.1 118 49.2
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 5.8e-23 111.7 164 46.3
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 7.5e-23 111.3 92 64.1
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 7.5e-23 111.3 92 64.1
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 7.5e-23 111.3 145 46.2
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 7.5e-23 111.3 145 46.2
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 9.8e-23 110.9 164 45.7
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 9.8e-23 110.9 163 44.8
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 1.3e-22 110.5 170 42.9
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.7e-22 110.2 163 46.0
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 2.2e-22 109.8 92 62.0
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 2.9e-22 109.4 163 44.2
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 3.7e-22 109.0 88 58.0
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 4.9e-22 108.6 92 63.0
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 4.9e-22 108.6 92 63.0
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 8.3e-22 107.8 75 66.7
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 1.1e-21 107.5 88 58.0
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 1.1e-21 107.5 88 58.0
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 2.4e-21 106.3 82 63.4
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 2.4e-21 106.3 82 63.4
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 2.4e-21 106.3 82 63.4
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 3.2e-21 105.9 83 57.8
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 5.4e-21 105.1 92 57.6
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 7.1e-21 104.8 92 57.6
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 7.1e-21 104.8 92 57.6
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 9.2e-21 104.4 94 56.4
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 3.5e-20 102.4 93 57.0
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 3.5e-20 102.4 92 56.5
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 3.5e-20 102.4 162 42.0
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 3.5e-20 102.4 184 37.5
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 6.0e-20 101.7 168 36.9
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 3.0e-19 99.4 92 53.3
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.9e-18 96.7 96 51.0
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 5.6e-18 95.1 82 58.5
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 5.6e-18 95.1 112 47.3
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 1.2e-17 94.0 138 40.6
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 2.1e-17 93.2 99 51.5
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 2.3e-16 89.7 75 58.7
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.0e-15 86.7 91 52.7
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 5.8e-15 85.1 165 36.4
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 5.8e-15 85.1 66 62.1
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 1.7e-14 83.6 155 40.0
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 3.2e-13 79.3 124 42.7
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 7.1e-13 78.2 46 80.4
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 9.2e-13 77.8 138 38.4
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.7e-11 73.6 121 41.3
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.3e-11 73.2 52 63.5
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 2.5e-10 69.7 90 44.4
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 2.1e-09 66.6 150 32.7
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 6.2e-09 65.1 170 32.4
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 8.1e-09 64.7 45 62.2
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 1.8e-08 63.5 71 46.5
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 2.0e-07 60.1 43 65.1
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 3.4e-07 59.3 111 39.6
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 4.4e-07 58.9 119 35.3
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 8.4e-06 54.7 40 62.5


User provided reference genes

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