Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 3.2e-160 568.5 324 100.0
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 5.5e-152 541.2 320 97.2
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 4.1e-139 498.4 325 89.8
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.0e-134 482.3 301 93.7
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 7.4e-133 477.6 326 86.5
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 2.1e-119 433.0 325 77.8
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 4.7e-119 431.8 325 79.4
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 4.4e-117 425.2 329 76.3
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 5.7e-117 424.9 317 78.9
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 1.3e-116 423.7 325 76.3
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.3e-116 423.7 325 80.3
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.3e-116 423.7 325 80.3
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 1.7e-116 423.3 335 74.6
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 2.8e-116 422.5 328 76.8
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 2.8e-116 422.5 326 77.6
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 2.8e-116 422.5 325 78.5
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 3.7e-116 422.2 327 77.1
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.8e-116 421.8 325 78.5
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 4.8e-116 421.8 327 74.9
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 4.8e-116 421.8 327 76.5
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 8.2e-116 421.0 332 76.2
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 2.4e-115 419.5 329 73.6
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 3.1e-115 419.1 304 80.9
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 5.3e-115 418.3 327 74.3
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 7.0e-115 417.9 286 84.3
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.2e-114 417.2 331 74.3
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.6e-114 416.8 325 75.7
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 2.0e-114 416.4 325 76.6
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 2.6e-114 416.0 334 76.9
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 2.6e-114 416.0 320 77.2
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 3.5e-114 415.6 330 74.2
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 3.5e-114 415.6 325 73.8
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 3.5e-114 415.6 327 75.8
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 4.5e-114 415.2 308 80.2
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 4.5e-114 415.2 326 74.2
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 5.9e-114 414.8 326 74.5
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 7.7e-114 414.5 302 80.1
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 1.0e-113 414.1 326 74.8
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 1.3e-113 413.7 325 74.5
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 2.9e-113 412.5 325 74.2
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 2.9e-113 412.5 327 75.2
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 3.8e-113 412.1 326 74.2
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 5.0e-113 411.8 325 76.0
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 5.0e-113 411.8 330 73.9
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 6.5e-113 411.4 308 77.9
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 6.5e-113 411.4 329 74.5
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 8.5e-113 411.0 327 74.9
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 8.5e-113 411.0 342 72.5
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 1.1e-112 410.6 328 73.8
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.1e-112 410.6 317 77.0
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.1e-112 410.6 331 75.5
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.5e-112 410.2 330 74.8
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 1.9e-112 409.8 290 81.7
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.9e-112 409.8 285 79.6
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 3.2e-112 409.1 309 77.3
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 3.2e-112 409.1 283 80.6
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 3.2e-112 409.1 330 73.6
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 4.2e-112 408.7 336 72.3
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 5.5e-112 408.3 329 74.8
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.2e-111 407.1 316 75.9
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 1.2e-111 407.1 311 77.2
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 2.1e-111 406.4 332 76.8
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 2.7e-111 406.0 335 72.2
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 2.7e-111 406.0 360 70.0
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 3.6e-111 405.6 330 73.3
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 4.7e-111 405.2 321 73.2
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 6.1e-111 404.8 339 71.7
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 8.0e-111 404.4 326 74.5
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 1.0e-110 404.1 327 73.4
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.0e-110 404.1 326 73.0
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 1.8e-110 403.3 327 72.2
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 3.0e-110 402.5 296 79.4
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 3.0e-110 402.5 296 79.4
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 3.0e-110 402.5 325 75.7
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 3.0e-110 402.5 380 66.1
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 4.0e-110 402.1 327 71.3
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 5.2e-110 401.7 314 75.8
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 6.8e-110 401.4 323 74.3
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 6.8e-110 401.4 325 73.5
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 8.8e-110 401.0 331 73.4
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 8.8e-110 401.0 329 71.1
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 1.2e-109 400.6 320 74.7
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 1.2e-109 400.6 327 73.4
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 1.2e-109 400.6 320 74.7
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.2e-109 400.6 325 75.4
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 2.0e-109 399.8 326 73.0
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 2.0e-109 399.8 316 74.4
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 2.6e-109 399.4 328 74.4
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 2.6e-109 399.4 331 74.9
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 3.4e-109 399.1 312 75.3
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 3.4e-109 399.1 325 72.6
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 5.7e-109 398.3 325 73.2
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 7.5e-109 397.9 311 75.9
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 9.7e-109 397.5 328 71.6
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 9.7e-109 397.5 320 74.1
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 9.7e-109 397.5 332 72.6
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.7e-108 396.7 296 78.7
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 3.7e-108 395.6 303 75.9
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 4.8e-108 395.2 320 71.6
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 4.8e-108 395.2 281 81.9
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 8.3e-108 394.4 327 73.1
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.1e-107 394.0 301 76.4
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 1.1e-107 394.0 277 80.5
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 1.4e-107 393.7 320 73.8
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 5.3e-107 391.7 325 71.7
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 5.3e-107 391.7 324 72.2
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.2e-106 390.6 330 72.7
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 2.0e-106 389.8 328 72.3
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 2.7e-106 389.4 323 71.5
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 2.7e-106 389.4 325 74.2
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.5e-106 389.0 259 84.9
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 4.5e-106 388.7 326 71.5
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 4.5e-106 388.7 328 72.0
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 5.9e-106 388.3 326 71.5
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 5.9e-106 388.3 304 74.7
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 2.2e-105 386.3 322 71.7
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 2.2e-105 386.3 330 71.5
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.2e-105 386.3 327 71.9
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 2.9e-105 386.0 322 71.7
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 2.9e-105 386.0 322 71.7
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 6.5e-105 384.8 322 71.4
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 6.5e-105 384.8 322 71.4
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 8.5e-105 384.4 313 73.2
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.5e-104 383.6 330 70.9
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 1.5e-104 383.6 325 72.9
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 3.2e-104 382.5 324 72.2
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 7.2e-104 381.3 328 72.0
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 9.4e-104 380.9 323 72.1
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 2.1e-103 379.8 307 72.3
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 1.0e-102 377.5 318 72.3
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 5.2e-102 375.2 330 69.4
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 2.6e-101 372.9 261 82.8
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 2.6e-101 372.9 300 74.3
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.4e-101 372.5 256 74.2
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 5.7e-101 371.7 325 69.5
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 7.5e-101 371.3 310 64.8
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 2.2e-100 369.8 299 73.6
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 1.0e-97 360.9 272 72.8
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 6.6e-97 358.2 302 72.8
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 1.1e-96 357.5 327 67.0
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.1e-96 357.5 231 90.0
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 1.2e-95 354.0 334 66.8
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.4e-94 350.5 298 69.5
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.7e-92 342.4 326 58.3
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 5.4e-91 338.6 231 83.1
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 7.0e-91 338.2 227 87.2
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 2.0e-90 336.7 334 67.7
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 2.3e-89 333.2 306 70.6
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 1.4e-86 323.9 292 64.4
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 2.3e-86 323.2 358 60.1
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 1.9e-83 313.5 322 58.4
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 2.3e-78 296.6 271 64.2
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 5.8e-77 292.0 251 59.4
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 2.4e-75 286.6 221 78.7
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 1.2e-74 284.3 250 57.6
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 2.1e-74 283.5 218 78.9
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.7e-74 283.1 256 60.5
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 1.6e-71 273.9 246 75.6
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 1.6e-71 273.9 263 70.3
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 2.4e-67 260.0 237 74.3
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 3.9e-57 226.1 275 45.1
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 4.3e-56 222.6 149 74.5
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 1.1e-54 218.0 267 48.3
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 3.2e-51 206.5 125 79.2
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 7.1e-51 205.3 124 80.6
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 1.2e-50 204.5 149 71.1
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 5.3e-46 189.1 204 67.2
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 3.2e-43 179.9 189 69.3
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.2e-37 161.4 122 70.5
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 6.7e-33 145.6 125 67.2
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 2.5e-32 143.7 96 78.1
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 1.6e-31 141.0 86 81.4
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 2.1e-31 140.6 108 76.9
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 4.8e-31 139.4 261 38.3
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 1.9e-24 117.5 76 78.9
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 1.0e-20 105.1 158 55.1
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 3.0e-17 93.6 107 65.4
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 3.9e-17 93.2 147 43.5
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 2.5e-16 90.5 83 80.7
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 1.1e-14 85.1 160 51.9
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 1.9e-11 74.3 93 45.2
CAN.G835.4 Capsicum annuum HOM05D000091 ORTHO05D003679 3.1e-06 57.0 36 83.3


User provided reference genes

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