Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 3.7e-196 688.0 334 100.0
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 1.2e-186 656.4 324 97.5
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 2.8e-183 645.2 324 95.4
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 8.7e-153 543.9 324 78.1
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.5e-152 543.1 321 78.8
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 1.1e-150 537.0 324 77.2
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 5.8e-149 531.2 324 77.8
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 9.9e-149 530.4 319 78.1
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 1.4e-147 526.6 327 76.8
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 1.9e-147 526.2 320 77.5
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 5.5e-147 524.6 324 74.4
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 9.3e-147 523.9 313 77.6
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.2e-146 523.5 322 76.7
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 1.6e-146 523.1 319 76.2
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.6e-146 521.5 323 76.2
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 3.0e-145 518.8 314 78.0
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 6.7e-145 517.7 326 74.5
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 2.5e-144 515.8 324 74.4
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 9.6e-144 513.8 324 74.1
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 9.6e-144 513.8 317 76.7
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 1.3e-143 513.5 323 73.1
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.3e-143 513.5 324 74.7
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 3.7e-143 511.9 317 74.1
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 4.0e-142 508.4 330 71.2
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 4.0e-142 508.4 318 80.5
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 5.3e-142 508.1 325 74.8
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 5.3e-142 508.1 293 79.2
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 5.3e-142 508.1 318 75.2
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 5.3e-142 508.1 317 74.4
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 6.9e-142 507.7 324 73.5
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 1.2e-141 506.9 295 77.6
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 1.2e-141 506.9 310 75.5
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.4e-141 505.4 324 73.1
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.4e-141 505.4 324 73.1
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 5.8e-141 504.6 317 72.9
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 7.6e-141 504.2 324 75.3
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 7.6e-141 504.2 323 73.4
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 7.6e-141 504.2 321 72.9
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 1.3e-140 503.4 307 74.9
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.7e-140 503.1 324 72.5
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 2.2e-140 502.7 324 72.8
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 4.9e-140 501.5 320 73.4
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.1e-139 500.4 293 79.2
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 2.5e-139 499.2 319 74.3
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 3.2e-139 498.8 324 71.6
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 3.2e-139 498.8 317 72.9
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 5.5e-139 498.0 324 72.5
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 9.3e-139 497.3 324 72.5
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 2.1e-138 496.1 324 70.7
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 2.7e-138 495.7 322 72.7
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 3.5e-138 495.4 300 78.0
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 4.6e-138 495.0 320 74.4
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 7.9e-138 494.2 305 75.4
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 1.0e-137 493.8 327 71.9
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 1.0e-137 493.8 332 70.5
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 1.0e-137 493.8 317 72.2
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 1.0e-137 493.8 305 75.4
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.3e-137 493.4 319 72.4
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 1.8e-137 493.0 329 72.0
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 3.9e-137 491.9 321 72.6
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 5.1e-137 491.5 330 72.7
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 1.5e-136 490.0 323 71.2
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 1.9e-136 489.6 324 72.2
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 3.3e-136 488.8 318 71.7
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 3.3e-136 488.8 317 71.9
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 5.7e-136 488.0 318 71.4
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 5.7e-136 488.0 312 71.2
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 1.3e-135 486.9 318 72.0
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 3.7e-135 485.3 317 71.9
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 3.7e-135 485.3 312 71.2
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 3.7e-135 485.3 335 70.7
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 6.3e-135 484.6 319 71.2
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 6.3e-135 484.6 319 71.2
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 8.2e-135 484.2 319 71.2
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 8.2e-135 484.2 319 71.2
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 8.2e-135 484.2 319 71.2
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 1.8e-134 483.0 318 71.1
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 1.8e-134 483.0 325 71.4
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 5.3e-134 481.5 319 71.5
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 1.2e-133 480.3 321 69.2
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 1.2e-133 480.3 310 73.2
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 1.5e-133 479.9 318 70.1
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 5.8e-133 478.0 286 76.6
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 7.6e-133 477.6 323 69.7
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.3e-132 476.9 324 70.1
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 1.7e-132 476.5 297 73.7
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 1.7e-132 476.5 325 71.1
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 1.7e-132 476.5 315 70.5
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 3.8e-132 475.3 362 64.9
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 5.0e-132 474.9 307 72.0
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 5.5e-131 471.5 318 69.2
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.6e-130 469.9 318 69.2
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 1.6e-130 469.9 313 69.3
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 2.7e-130 469.2 320 69.1
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 2.7e-130 469.2 324 67.3
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 3.5e-130 468.8 320 69.1
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.1e-130 468.0 318 71.4
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 7.9e-130 467.6 319 66.1
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 1.8e-129 466.5 323 67.2
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.0e-129 465.7 319 69.9
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 1.5e-128 463.4 325 70.2
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.2e-127 459.5 325 69.2
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 2.2e-127 459.5 312 69.9
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 4.8e-127 458.4 355 62.5
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 8.2e-127 457.6 325 67.7
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.4e-126 456.8 299 72.6
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 1.8e-126 456.4 304 69.1
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 2.2e-124 449.5 324 67.6
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.5e-124 448.0 294 67.3
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 2.7e-122 442.6 306 68.3
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 4.3e-120 435.3 309 67.6
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 6.3e-119 431.4 290 69.3
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 1.7e-116 423.3 250 80.0
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 1.4e-115 420.2 317 65.3
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 1.6e-114 416.8 242 81.0
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.3e-113 412.9 286 65.4
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 1.1e-112 410.6 285 66.3
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 3.3e-112 409.1 308 62.0
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 9.7e-112 407.5 311 64.0
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.3e-111 407.1 269 70.3
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 3.7e-111 405.6 403 52.9
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 1.7e-108 396.7 288 63.5
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 2.3e-105 386.3 229 78.2
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 4.4e-104 382.1 314 59.9
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 4.5e-101 372.1 273 65.6
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.8e-95 352.8 255 63.5
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 4.1e-94 349.0 247 66.8
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.2e-90 337.4 226 66.4
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 3.4e-88 329.3 285 60.0
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 1.6e-85 320.5 200 75.0
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 7.7e-85 318.2 227 65.2
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 1.5e-83 313.9 315 49.5
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.2e-72 277.7 258 52.3
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 4.9e-71 272.3 228 57.9
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 1.1e-65 254.6 175 68.0
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 4.0e-65 252.7 152 77.0
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 3.5e-61 239.6 179 63.7
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 1.1e-59 234.6 132 83.3
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 2.4e-49 200.3 125 72.0
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 5.2e-49 199.1 125 73.6
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 6.2e-34 149.1 103 68.0
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 3.8e-31 139.8 172 50.6
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 3.7e-26 123.2 75 69.3
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 2.2e-23 114.0 64 78.1
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 9.3e-22 108.6 66 69.7
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 1.0e-20 105.1 80 65.0
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 2.3e-20 104.0 169 37.3
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 4.5e-16 89.7 86 54.7
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 3.2e-14 83.6 57 68.4
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 3.0e-12 77.0 218 28.0
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.8e-10 70.5 41 73.2
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 3.1e-09 67.0 95 38.9
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 5.3e-09 66.2 225 27.1
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 2.0e-08 64.3 78 51.3
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 4.5e-08 63.2 155 31.0
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 1.3e-07 61.6 167 28.7
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.2e-07 60.8 42 66.7
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 3.8e-07 60.1 179 30.2
AT1G54440 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 1.4e-06 58.2 153 30.1
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.4e-06 58.2 153 30.1
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 1.9e-06 57.8 153 30.1
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.9e-06 57.8 153 30.1
CBR_g19347 Chara braunii HOM05D002024 ORTHO05D004352 3.2e-06 57.0 171 27.5
EL10Ac2g04414 Beta vulgaris HOM05D002024 ORTHO05D004352 4.2e-06 56.6 156 26.9
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 4.2e-06 56.6 153 30.1
Thhalv10023339m.g Eutrema salsugineum HOM05D002024 ORTHO05D004352 4.2e-06 56.6 148 28.4
Aqoxy1G00536 Aquilegia oxysepala HOM05D002024 ORTHO05D004352 7.2e-06 55.8 152 27.6
CsaV3_4G012120 Cucumis sativus L. HOM05D002024 ORTHO05D004352 7.2e-06 55.8 152 30.3
COL.COLO4_28619 Corchorus olitorius HOM05D002024 ORTHO05D004352 9.4e-06 55.5 152 28.9
QL07p017660 Quercus lobata HOM05D002024 ORTHO05D004352 9.4e-06 55.5 152 30.3
SpUn0001_0780 Schrenkiella parvula HOM05D002024 ORTHO05D004352 9.4e-06 55.5 148 28.4


User provided reference genes

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