Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 2.3e-156 555.8 351 100.0
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 1.8e-145 519.6 351 96.0
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 9.8e-139 497.3 362 90.9
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 1.2e-133 480.3 351 86.6
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.9e-126 456.4 341 80.4
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 3.3e-126 455.7 361 81.2
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 2.8e-125 452.6 361 80.9
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 1.1e-124 450.7 361 82.0
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.8e-124 449.9 342 81.0
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 2.3e-124 449.5 355 82.8
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 2.3e-124 449.5 249 90.8
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 4.0e-124 448.7 249 90.0
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 5.2e-124 448.4 342 80.4
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 8.9e-124 447.6 249 89.6
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 1.2e-123 447.2 249 90.4
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 1.2e-123 447.2 249 90.4
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 2.0e-123 446.4 249 90.0
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 2.0e-123 446.4 361 78.9
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 2.0e-123 446.4 249 89.6
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 2.6e-123 446.0 249 90.0
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 9.8e-123 444.1 342 81.6
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 4.9e-122 441.8 341 82.7
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 6.4e-122 441.4 366 82.5
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 3.2e-121 439.1 249 89.6
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 5.4e-121 438.3 248 88.7
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 7.1e-121 438.0 339 84.1
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 9.2e-121 437.6 339 78.2
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 1.2e-120 437.2 246 89.8
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 1.0e-119 434.1 346 81.2
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 1.3e-119 433.7 239 90.8
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 1.3e-119 433.7 248 87.5
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.7e-119 433.3 249 87.6
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.7e-119 433.3 249 87.6
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 1.7e-119 433.3 250 86.8
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 1.7e-119 433.3 249 86.7
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 2.3e-119 433.0 250 86.4
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 2.3e-119 433.0 242 89.3
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 3.9e-119 432.2 339 79.4
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 6.6e-119 431.4 353 78.8
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 1.1e-118 430.6 249 87.6
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 1.5e-118 430.3 353 78.2
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 2.5e-118 429.5 250 86.8
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 2.5e-118 429.5 248 87.9
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 2.1e-117 426.4 248 86.3
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 2.1e-117 426.4 354 75.1
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 2.8e-117 426.0 238 89.5
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 4.7e-117 425.2 249 85.1
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 6.2e-117 424.9 249 85.1
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 8.1e-117 424.5 248 86.7
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 8.1e-117 424.5 249 85.1
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 1.4e-116 423.7 356 76.7
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 2.3e-116 422.9 231 91.3
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 3.1e-116 422.5 250 86.8
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 4.0e-116 422.2 354 77.7
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 5.2e-116 421.8 243 87.2
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 5.2e-116 421.8 243 87.2
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 5.2e-116 421.8 249 85.9
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 1.2e-115 420.6 349 80.2
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 2.0e-115 419.9 359 79.9
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 3.4e-115 419.1 348 77.3
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 4.4e-115 418.7 243 86.8
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 7.6e-115 417.9 244 86.9
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 7.6e-115 417.9 350 72.9
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 9.9e-115 417.5 251 85.7
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 1.3e-114 417.2 231 89.6
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.7e-114 416.8 252 85.3
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.7e-114 416.8 252 85.3
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 2.2e-114 416.4 250 85.6
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 2.2e-114 416.4 244 86.1
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 4.9e-114 415.2 251 85.7
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 6.4e-114 414.8 230 90.0
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 1.4e-113 413.7 351 77.8
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 1.9e-113 413.3 229 90.0
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 2.4e-113 412.9 351 77.5
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 4.1e-113 412.1 355 75.5
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 3.5e-112 409.1 228 88.2
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 1.0e-111 407.5 237 86.1
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 1.7e-111 406.8 237 85.7
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 1.7e-111 406.8 424 63.9
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 1.1e-110 404.1 237 86.5
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 1.5e-110 403.7 395 66.1
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 1.5e-110 403.7 233 86.7
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 3.3e-110 402.5 230 87.0
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 1.2e-109 400.6 242 83.9
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 1.6e-109 400.2 240 84.2
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 4.7e-109 398.7 237 84.4
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 4.7e-109 398.7 239 84.1
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 2.4e-108 396.4 237 84.0
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 5.2e-108 395.2 246 83.3
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 2.0e-107 393.3 240 81.7
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 2.0e-107 393.3 240 81.7
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 2.6e-107 392.9 240 81.7
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 2.6e-107 392.9 240 81.7
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 4.4e-107 392.1 218 89.9
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 9.9e-107 391.0 250 79.6
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 2.9e-106 389.4 242 82.6
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 3.8e-106 389.0 240 81.7
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 3.2e-105 386.0 251 79.7
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.3e-103 380.6 250 78.0
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 1.9e-102 376.7 269 74.0
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 1.9e-102 376.7 243 77.0
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 3.3e-102 375.9 250 77.2
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 5.6e-102 375.2 217 88.5
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 2.0e-99 366.7 250 76.0
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 7.6e-91 338.2 333 57.1
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 9.9e-91 337.8 250 72.4
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 1.7e-90 337.0 294 78.2
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.2e-88 330.9 190 87.9
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 1.8e-84 317.0 230 70.4
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 2.4e-84 316.6 249 67.1
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 2.6e-83 313.2 237 71.3
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 1.3e-82 310.8 569 38.5
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 2.7e-80 303.1 185 83.8
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 8.2e-77 291.6 355 63.9
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 6.9e-76 288.5 235 63.8
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 3.4e-75 286.2 252 63.9
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 1.7e-74 283.9 182 81.9
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 2.3e-71 273.5 216 69.0
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 1.4e-68 264.2 198 68.2
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 8.5e-66 255.0 157 82.2
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 2.7e-64 250.0 238 80.3
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 1.1e-60 238.0 141 85.8
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 8.5e-58 228.4 234 55.1
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 4.2e-57 226.1 198 62.6
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 1.3e-53 214.5 108 96.3
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 1.7e-53 214.2 122 88.5
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 4.1e-52 209.5 137 76.6
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 5.3e-52 209.1 107 95.3
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 3.5e-51 206.5 137 76.6
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 2.9e-50 203.4 108 89.8
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 3.8e-50 203.0 219 78.5
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.2e-48 198.0 109 88.1
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 8.0e-48 195.3 108 88.9
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 1.0e-47 194.9 103 91.3
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 8.2e-45 185.3 109 84.4
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 9.1e-44 181.8 92 94.6
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 2.2e-42 177.2 95 92.6
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 1.9e-41 174.1 95 91.6
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 3.2e-41 173.3 131 70.2
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 2.7e-40 170.2 91 90.1
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 5.7e-38 162.5 187 64.7
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 1.3e-34 151.4 74 95.9
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 2.4e-28 130.6 80 80.0
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 2.4e-28 130.6 80 80.0
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 4.5e-27 126.3 91 73.6
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 1.2e-19 101.7 67 76.1
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 2.8e-16 90.5 141 48.9
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 3.6e-16 90.1 166 65.1
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 5.0e-10 69.7 38 89.5
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 8.6e-10 68.9 38 86.8
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 3.3e-09 67.0 102 45.1
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 3.6e-08 63.5 167 66.5
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 5.2e-07 59.7 45 64.4
Haze_05345 Corylus avellana HOM05D004689 ORTHO05D023802 8.9e-07 58.9 144 61.1
Haze_08645 Corylus avellana HOM05D004689 ORTHO05D023802 8.9e-07 58.9 38 76.3
MSTRG.5777 Avicennia marina HOM05D004689 ORTHO05D023802 9.8e-06 55.5 128 57.0


User provided reference genes

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