Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 0.0e+00 1499.6 748 100.0
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 0.0e+00 1431.8 748 96.1
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 0.0e+00 1336.2 748 89.3
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 0.0e+00 1194.5 740 81.6
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 3.4e-282 974.9 757 67.1
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 4.9e-281 971.1 761 65.8
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 4.2e-280 968.0 760 66.4
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 3.0e-278 961.8 761 66.4
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 5.1e-278 961.1 760 64.5
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 7.4e-277 957.2 758 66.1
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 5.8e-274 947.6 764 63.9
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 2.2e-273 945.7 759 66.0
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 8.4e-273 943.7 768 65.1
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.2e-272 941.8 768 65.0
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 5.5e-272 941.0 762 65.4
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.1e-271 939.1 768 64.2
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 1.8e-270 936.0 763 65.5
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 2.3e-270 935.6 757 65.0
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 6.7e-270 934.1 763 64.5
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 1.4e-267 926.4 761 63.9
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 1.2e-266 923.3 761 63.6
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 1.9e-264 916.0 764 63.6
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 1.9e-264 916.0 760 63.4
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 3.2e-264 915.2 760 64.2
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 5.5e-264 914.4 764 63.1
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 5.5e-264 914.4 753 62.2
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 5.5e-264 914.4 753 62.2
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 5.1e-262 907.9 734 64.3
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 1.1e-261 906.7 762 63.1
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 9.7e-261 903.7 764 62.2
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 1.6e-260 902.9 757 61.8
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 6.3e-260 901.0 754 63.5
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 1.1e-259 900.2 754 63.0
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 1.8e-259 899.4 756 64.0
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 4.1e-259 898.3 758 63.5
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 6.9e-259 897.5 722 64.1
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 1.5e-258 896.3 734 64.3
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 1.7e-257 892.9 759 63.1
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 1.4e-256 889.8 748 62.4
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.9e-256 889.4 740 63.6
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 4.2e-256 888.3 739 64.0
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 9.4e-256 887.1 743 62.7
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 1.4e-254 883.2 745 63.8
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 1.4e-254 883.2 741 63.8
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 1.1e-253 880.2 780 59.4
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 1.5e-253 879.8 749 61.4
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 2.5e-253 879.0 739 63.5
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 7.4e-253 877.5 727 62.6
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 1.3e-252 876.7 786 60.3
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 1.7e-252 876.3 734 63.4
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 3.7e-252 875.2 720 64.4
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 6.3e-252 874.4 759 60.5
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 3.1e-251 872.1 759 59.9
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 4.5e-250 868.2 752 61.8
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 1.0e-249 867.1 747 62.0
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 2.1e-247 859.4 750 61.2
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 7.9e-247 857.4 727 61.5
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 3.9e-246 855.1 755 60.5
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 2.6e-245 852.4 748 61.0
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 7.4e-245 850.9 817 57.0
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 9.7e-245 850.5 741 60.7
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 2.8e-244 849.0 746 60.2
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 3.8e-241 838.6 779 57.6
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 8.0e-239 830.9 744 58.5
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 4.4e-237 825.1 746 58.7
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 8.2e-236 820.8 730 59.0
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 1.1e-235 820.5 726 59.1
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 1.4e-235 820.1 717 60.0
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 2.0e-234 816.2 728 58.9
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 4.5e-234 815.1 748 57.9
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 1.7e-233 813.1 726 59.4
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 6.5e-233 811.2 776 56.3
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 9.4e-232 807.4 1011 47.9
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 8.0e-231 804.3 726 58.1
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 1.5e-229 800.0 735 58.2
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 2.6e-229 799.3 746 57.0
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 4.4e-229 798.5 746 56.8
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.7e-228 795.4 723 58.1
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 6.3e-228 794.7 746 57.1
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 7.7e-226 787.7 718 58.6
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 1.9e-224 783.1 870 50.6
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 1.8e-222 776.5 654 63.1
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 2.8e-220 769.2 738 55.6
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 2.8e-220 769.2 747 56.4
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 1.1e-216 757.3 762 54.1
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 3.3e-216 755.7 961 47.2
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 5.6e-216 755.0 738 55.0
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 5.6e-216 755.0 738 54.7
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 7.0e-211 738.0 644 60.9
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 2.0e-210 736.5 744 54.0
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 4.7e-207 725.3 746 55.9
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 8.0e-207 724.5 744 51.3
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 8.9e-206 721.1 694 54.3
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 8.9e-198 694.5 770 49.9
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 7.5e-197 691.4 599 60.4
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.9e-184 650.2 606 59.6
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 5.6e-176 622.1 557 60.0
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 2.1e-175 620.2 716 48.3
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 4.8e-175 619.0 604 57.3
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 5.3e-174 615.5 499 64.3
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 1.6e-162 577.4 756 45.2
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 3.9e-161 572.8 758 44.5
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 4.0e-158 562.8 793 42.1
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 7.0e-126 455.7 385 60.5
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 7.7e-125 452.2 400 58.8
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 8.0e-114 415.6 476 47.1
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 3.2e-107 393.7 469 48.0
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.3e-103 381.7 471 45.2
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.0e-101 374.4 478 44.6
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 8.9e-89 332.4 331 58.3
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 8.9e-89 332.4 320 56.2
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 3.4e-88 330.5 722 34.3
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.5e-83 315.1 262 64.9
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 4.7e-82 310.1 298 60.1
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 3.9e-76 290.4 1021 26.6
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 9.2e-70 269.2 195 67.2
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 1.5e-64 251.9 280 53.2
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 3.9e-60 237.3 231 58.0
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 8.1e-58 229.6 160 68.8
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 3.8e-55 220.7 367 38.7
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 6.0e-53 213.4 162 61.1
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 6.0e-53 213.4 719 27.5
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.8e-50 203.8 298 37.2
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 1.2e-45 189.1 184 50.5
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 1.0e-44 186.0 124 71.8
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 9.7e-35 152.9 173 56.1
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.2e-29 136.0 232 39.7
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.9e-24 117.1 111 55.0
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 7.7e-24 116.7 288 36.1
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 7.2e-22 110.2 103 59.2
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.7e-21 108.2 107 51.4
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 3.3e-19 101.3 191 33.5
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 9.1e-17 93.2 64 73.4
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 5.2e-12 77.4 59 61.0
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 1.3e-10 72.8 153 30.1
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 2.2e-10 72.0 103 37.9
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 2.2e-10 72.0 54 63.0
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 3.1e-09 68.2 151 31.8
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.2e-08 66.2 88 44.3
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 1.7e-07 62.4 195 28.7


User provided reference genes

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