Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 0.0e+00 2184.8 1133 100.0
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 0.0e+00 1989.2 1133 92.2
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 0.0e+00 1803.5 1060 89.2
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 0.0e+00 1690.6 1138 79.4
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 0.0e+00 1132.9 1152 57.2
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 0.0e+00 1130.5 1153 54.7
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 0.0e+00 1114.8 1139 57.3
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 0.0e+00 1106.3 1179 55.6
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 0.0e+00 1090.9 1191 52.8
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 0.0e+00 1082.8 1155 53.8
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 9.3e-311 1070.5 1161 51.2
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 1.2e-310 1070.1 1152 55.9
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 7.7e-310 1067.4 1217 52.9
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 1.8e-303 1046.2 1153 53.9
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 2.0e-302 1042.7 1158 53.3
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 2.9e-301 1038.9 1154 51.8
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 4.2e-300 1035.0 1159 51.8
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 4.1e-295 1018.5 1160 53.6
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 1.0e-290 1003.8 1241 48.5
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 6.7e-290 1001.1 1152 51.0
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.1e-289 1000.3 1182 50.2
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 8.2e-288 994.2 1162 51.7
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 1.6e-286 989.9 1188 49.0
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 1.1e-284 983.8 1266 48.5
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 1.9e-276 956.4 1172 50.9
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 5.5e-276 954.9 1249 48.6
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 6.8e-274 948.0 1125 47.8
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 7.0e-271 937.9 1168 49.6
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 9.1e-271 937.6 1272 46.8
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 4.5e-270 935.3 1277 46.0
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 6.6e-269 931.4 1008 52.0
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 7.2e-268 927.9 1286 45.4
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.2e-267 927.2 1008 51.7
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 1.2e-267 927.2 1079 51.5
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 1.3e-264 917.1 1211 48.6
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 4.1e-263 912.1 1197 45.4
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 4.6e-262 908.7 1202 46.2
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 7.8e-262 907.9 1322 44.1
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 1.3e-261 907.1 1198 45.4
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 3.9e-261 905.6 1199 45.4
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.8e-258 896.7 1188 45.1
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 1.5e-257 893.6 1197 44.9
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 3.7e-256 889.0 1156 47.2
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 7.0e-255 884.8 1181 45.9
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 9.2e-255 884.4 1177 46.2
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 1.3e-253 880.6 1184 45.0
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.3e-253 879.8 1157 47.3
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 1.1e-252 877.5 1192 45.0
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 2.5e-252 876.3 1144 44.8
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 4.3e-252 875.5 1169 44.5
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 3.6e-251 872.5 1206 44.4
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 8.1e-251 871.3 1199 44.5
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 3.1e-250 869.4 1152 46.8
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 5.2e-250 868.6 1243 43.2
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 2.0e-249 866.7 1124 45.2
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 9.8e-249 864.4 1178 44.9
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.2e-248 863.2 1197 45.7
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 1.2e-246 857.4 1180 44.9
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 5.1e-245 852.0 669 64.0
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 3.3e-244 849.4 1133 45.5
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 3.3e-244 849.4 1124 46.5
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 4.7e-243 845.5 1268 43.7
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 1.1e-242 844.3 1013 48.7
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 5.2e-242 842.0 1034 48.1
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 1.2e-241 840.9 1152 44.7
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 3.4e-241 839.3 1194 43.1
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 5.8e-241 838.6 1157 44.7
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 9.9e-241 837.8 1187 45.8
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 1.7e-240 837.0 1190 43.8
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 3.9e-237 825.9 1142 44.4
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 5.1e-237 825.5 1273 42.6
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 8.6e-237 824.7 1158 44.6
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 1.5e-236 823.9 1271 43.0
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 5.6e-236 822.0 1147 44.7
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 2.8e-235 819.7 1165 43.3
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 1.4e-234 817.4 1182 43.3
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 5.2e-234 815.5 1269 41.4
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 2.9e-232 809.7 1158 43.4
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 3.8e-232 809.3 1194 42.6
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 4.9e-232 808.9 1158 43.6
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 6.4e-232 808.5 1093 44.6
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 7.1e-231 805.1 1133 43.7
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 2.5e-228 796.6 1152 43.2
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 3.3e-228 796.2 1112 46.1
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 9.6e-228 794.7 1152 43.4
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 8.1e-227 791.6 1173 42.0
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 2.6e-225 786.6 1182 42.0
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 6.4e-224 781.9 1273 41.8
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 3.2e-215 753.1 1178 41.9
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 3.2e-215 753.1 1178 41.9
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 3.0e-213 746.5 730 53.6
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 3.9e-213 746.1 1157 41.7
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 4.9e-208 729.2 654 56.7
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.8e-205 720.7 1071 43.1
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 1.1e-204 718.0 907 47.3
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 1.4e-202 711.1 1079 44.0
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 3.6e-198 696.4 1087 43.3
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 3.7e-195 686.4 1098 40.5
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 2.3e-189 667.2 1008 41.6
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 4.1e-186 656.4 1084 39.8
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 7.7e-185 652.1 662 52.4
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 2.6e-180 637.1 1151 40.9
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 4.1e-178 629.8 815 47.5
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 1.7e-168 597.8 665 51.0
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.5e-164 584.7 983 38.8
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 1.3e-163 581.6 961 41.0
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.1e-150 537.7 443 61.2
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 3.0e-149 533.9 531 53.9
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 6.6e-144 516.2 793 42.0
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.5e-135 488.4 836 40.3
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 2.3e-133 481.1 744 42.2
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 9.2e-130 469.2 819 40.0
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 1.5e-116 425.2 717 36.8
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 4.2e-106 390.6 1079 31.5
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 3.9e-104 384.0 343 56.3
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 2.1e-102 378.3 973 33.0
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 1.4e-101 375.6 974 32.6
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 3.1e-101 374.4 682 35.5
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 5.5e-98 363.6 304 60.2
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 3.5e-97 360.9 315 57.5
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 5.7e-87 327.0 725 36.6
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 8.2e-86 323.2 796 33.3
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 2.4e-85 321.6 269 56.9
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.0e-84 318.5 293 54.9
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.2e-66 258.1 358 40.8
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 2.0e-55 222.2 431 33.6
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 2.8e-54 218.4 453 42.8
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.3e-30 139.8 595 28.1
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 4.1e-29 134.8 294 28.6
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 2.1e-25 122.5 829 24.0
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 1.1e-24 120.2 324 31.5
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 1.1e-18 100.1 251 29.5
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 3.0e-11 75.5 98 45.9
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 3.4e-07 62.0 86 44.2
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 9.9e-07 60.5 115 39.1
Sabra06G0080700 Salix brachista HOM05D005064 ORTHO05D006611 1.3e-06 60.1 39 74.4
Lalb_Chr08g0236481 Lupinus albus HOM05D005064 ORTHO05D006611 2.2e-06 59.3 38 73.7


User provided reference genes

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