Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 1.6e-120 436.0 212 100.0
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 1.6e-112 409.5 211 93.8
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 6.4e-109 397.5 249 81.9
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 1.5e-105 386.3 223 86.1
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 2.1e-104 382.5 189 98.4
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 1.1e-95 353.6 211 81.5
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 1.1e-95 353.6 211 82.0
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 8.9e-95 350.5 214 80.4
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 4.4e-94 348.2 211 82.0
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 4.4e-94 348.2 211 80.6
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 1.7e-93 346.3 211 78.7
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 2.2e-93 345.9 211 79.1
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 2.9e-93 345.5 211 79.6
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 4.9e-93 344.7 211 80.6
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 4.9e-93 344.7 211 78.2
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 8.4e-93 344.0 211 78.2
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 4.2e-92 341.7 211 77.3
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 7.1e-92 340.9 206 80.1
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 7.1e-92 340.9 211 78.7
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 9.3e-92 340.5 204 82.4
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 1.2e-91 340.1 211 77.7
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 1.6e-91 339.7 211 77.7
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 1.6e-91 339.7 213 78.4
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 4.6e-91 338.2 213 77.5
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 3.0e-90 335.5 211 77.7
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 6.6e-90 334.3 208 77.9
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 1.9e-89 332.8 208 77.4
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 4.3e-89 331.6 212 75.9
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 1.6e-88 329.7 211 75.8
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 1.6e-88 329.7 204 78.9
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 3.6e-88 328.6 204 78.9
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 4.8e-88 328.2 204 78.9
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 1.8e-87 326.2 212 73.6
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 6.9e-87 324.3 214 74.8
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 1.2e-86 323.6 211 74.9
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 2.0e-86 322.8 210 75.7
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 2.0e-86 322.8 213 73.7
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 2.0e-86 322.8 213 73.7
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 3.4e-86 322.0 213 73.2
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 3.4e-86 322.0 213 74.2
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 4.4e-86 321.6 215 72.6
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 4.4e-86 321.6 210 75.2
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 5.8e-86 321.2 189 83.6
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 7.6e-86 320.9 213 73.7
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 9.9e-86 320.5 213 73.7
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 1.3e-85 320.1 213 73.2
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 1.3e-85 320.1 209 75.1
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 1.7e-85 319.7 212 74.1
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 2.2e-85 319.3 212 74.5
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 2.9e-85 318.9 209 74.6
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 1.1e-84 317.0 205 77.1
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 1.1e-84 317.0 204 77.5
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 2.4e-84 315.8 208 74.0
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 4.2e-84 315.1 202 76.7
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 5.4e-84 314.7 213 73.2
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 5.4e-84 314.7 203 76.8
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 7.1e-84 314.3 213 73.2
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 9.3e-84 313.9 232 71.6
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 1.2e-83 313.5 214 72.0
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 2.1e-83 312.8 204 75.5
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 2.1e-83 312.8 208 74.0
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 1.0e-82 310.5 216 70.8
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 1.3e-82 310.1 212 72.2
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 1.3e-82 310.1 216 70.8
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.3e-82 310.1 232 70.7
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 3.0e-82 308.9 200 76.5
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 3.9e-82 308.5 203 75.4
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 6.6e-82 307.8 216 70.4
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 6.6e-82 307.8 200 76.5
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 6.6e-82 307.8 200 76.0
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 8.7e-82 307.4 206 74.8
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 1.1e-81 307.0 209 71.8
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 1.9e-81 306.2 209 71.8
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 2.5e-81 305.8 216 69.9
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 2.5e-81 305.8 203 73.9
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 3.3e-81 305.4 212 71.2
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 7.3e-81 304.3 199 76.9
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 7.3e-81 304.3 224 70.5
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 9.6e-81 303.9 200 75.0
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 2.1e-80 302.8 185 79.5
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 3.6e-80 302.0 204 74.5
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 6.9e-79 297.7 195 72.3
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 3.4e-78 295.4 189 77.8
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 3.5e-75 285.4 202 72.8
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 2.5e-73 279.3 198 68.7
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 1.4e-71 273.5 188 70.2
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 9.0e-71 270.8 211 64.5
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 9.3e-68 260.8 203 62.6
Manes.02G162200 Manihot esculenta HOM05D005614 ORTHO05D006759 1.2e-67 260.4 156 80.1
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 9.6e-65 250.8 150 80.0
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.6e-64 250.0 165 73.9
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 3.7e-64 248.8 156 78.2
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 1.8e-63 246.5 238 57.1
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 1.8e-63 246.5 186 61.8
Hund27024 Selenicereus undatus HOM05D005614 ORTHO05D006759 3.1e-63 245.7 156 77.6
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 5.8e-62 241.5 158 75.3
Lsat_1_v5_gn_3_69700 Lactuca sativa HOM05D005614 ORTHO05D006759 8.4e-61 237.7 147 81.0
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 5.5e-60 235.0 171 69.6
SalBow7G1071 Salvia bowleyana HOM05D005614 ORTHO05D006759 5.7e-57 224.9 149 75.8
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 1.3e-56 223.8 180 62.2
Nn8g39974 Nelumbo nucifera HOM05D005614 ORTHO05D006759 1.2e-54 217.2 136 77.9
Eucgr.G01112 Eucalyptus grandis HOM05D005614 ORTHO05D006759 1.3e-48 197.2 130 74.6
TPR.G40310 Trifolium pratense HOM05D001808 ORTHO05D001747 9.1e-47 191.0 112 80.4
CDE12G0551 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 5.9e-46 188.3 133 70.7
Psat5g132400 Pisum sativum HOM05D005614 ORTHO05D006759 6.5e-45 184.9 122 73.0
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 8.5e-45 184.5 165 59.4
vmacro00825 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 1.4e-44 183.7 140 70.0
SGA_v2.0_scaffold31G12915 Striga asiatica HOM05D005614 ORTHO05D006759 2.1e-43 179.9 120 76.7
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 7.9e-43 177.9 351 38.5
Nitab4.5_0000003g0570 Nicotiana tabacum HOM05D005614 ORTHO05D006759 4.4e-41 172.2 143 65.7
Lj4A622G15 Lonicera japonica HOM05D005614 ORTHO05D006759 7.4e-41 171.4 95 88.4
Sabra05G0133300 Salix brachista HOM05D005614 ORTHO05D006759 4.1e-39 165.6 224 45.1
MBI03_g33030_MAGBIO Magnolia biondii HOM05D005614 ORTHO05D006759 3.5e-38 162.5 158 55.1
SEGI_11087 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 1.7e-37 160.2 96 78.1
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 2.7e-35 152.9 163 47.2
Haze_00458 Corylus avellana HOM05D005614 ORTHO05D006759 8.0e-35 151.4 84 82.1
Peaxi162Scf00689g00225 Petunia axillaris HOM05D005614 ORTHO05D006759 5.2e-34 148.7 125 64.0
Haze_00457 Corylus avellana HOM05D005614 ORTHO05D006759 2.8e-32 142.9 93 77.4
CDE06G0499 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 1.8e-31 140.2 97 67.0
QL09p036498 Quercus lobata HOM05D005614 ORTHO05D006759 9.4e-28 127.9 70 87.1
TPR.G24041 Trifolium pratense HOM05D005614 ORTHO05D006759 6.8e-26 121.7 94 63.8
MCO01G384 Micromonas commoda HOM05D005614 ORTHO05D006759 2.0e-25 120.2 192 38.5
PRCOL_00005856 Prasinoderma coloniale HOM05D005614 ORTHO05D006759 3.7e-24 115.9 136 44.9
Psat5g132360 Pisum sativum HOM05D005614 ORTHO05D006759 2.7e-22 109.8 76 68.4
Cfa025530 Carpinus fangiana HOM05D005614 ORTHO05D006759 5.9e-22 108.6 209 35.4
TWI75G0111 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 1.6e-19 100.5 115 52.2
SMO358G0086 Selaginella moellendorffii HOM05D005614 ORTHO05D006759 2.7e-14 83.2 84 54.8
TPR.G32 Trifolium pratense HOM05D005614 ORTHO05D006759 2.6e-09 66.6 32 87.5
Cfa016005 Carpinus fangiana HOM05D005614 ORTHO05D006759 1.1e-07 61.2 47 68.1
Rhsim03G0117800 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.1e-07 61.2 87 46.0
SEGI_10746 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 3.2e-07 59.7 56 50.0


User provided reference genes

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