Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007743.2 Cucumis melo HOM05D001364 ORTHO05D001316 6.4e-27 123.6 76 100.0
ClCG01G018630 Citrullus lanatus HOM05D001364 ORTHO05D001316 1.4e-18 95.9 75 85.3
Hma1.2p1_0019F.1_g013640 Hydrangea macrophylla HOM05D001364 ORTHO05D001316 5.1e-16 87.4 76 77.6
Sabra07G0078900 Salix brachista HOM05D001364 ORTHO05D001316 3.3e-15 84.7 73 67.1
vmacro12967 Vaccinium macrocarpon HOM05D001364 ORTHO05D001316 3.3e-15 84.7 68 79.4
Hund13597 Selenicereus undatus HOM05D001364 ORTHO05D001316 4.3e-15 84.3 75 76.0
VMungo0251G1244 Vigna mungo HOM05D001364 ORTHO05D001316 1.6e-14 82.4 69 78.3
CARHR202950 Cardamine hirsuta HOM05D001364 ORTHO05D001316 2.1e-14 82.0 71 67.6
Duzib187G0072 Durio zibethinus HOM05D001364 ORTHO05D001316 2.8e-14 81.6 75 70.7
Glyma.05G176400 Glycine max HOM05D001364 ORTHO05D001316 2.8e-14 81.6 69 76.8
COL.COLO4_27278 Corchorus olitorius HOM05D001364 ORTHO05D001316 3.6e-14 81.3 75 64.0
PGR004G2141 Punica granatum HOM05D001364 ORTHO05D001316 4.7e-14 80.9 77 62.3
Thhalv10014635m.g Eutrema salsugineum HOM05D001364 ORTHO05D001316 1.1e-13 79.7 71 64.8
Aa31LG1G16700 Aethionema arabicum HOM05D001364 ORTHO05D001316 1.8e-13 79.0 75 62.7
Sc16g0000190 Simmondsia chinensis HOM05D001364 ORTHO05D001316 2.4e-13 78.6 75 64.0
Ah.03g143950 Amaranthus hybridus HOM05D001364 ORTHO05D001316 3.1e-13 78.2 75 70.7
Manes.13G095800 Manihot esculenta HOM05D001364 ORTHO05D001316 3.1e-13 78.2 72 72.2
THA.LOC104814766 Tarenaya hassleriana HOM05D001364 ORTHO05D001316 3.1e-13 78.2 72 65.3
BolC2t12463H Brassica oleracea HOM05D001364 ORTHO05D001316 6.8e-13 77.0 64 68.8
HanXRQChr04g0117461 Helianthus annuus HOM05D001364 ORTHO05D001316 6.8e-13 77.0 65 67.7
Oeu022952.1 Olea europaea HOM05D001364 ORTHO05D001316 6.8e-13 77.0 74 63.5
AL6G20840 Arabidopsis lyrata HOM05D001364 ORTHO05D001316 8.9e-13 76.6 71 64.8
AT5G10350 Arabidopsis thaliana HOM05D001364 ORTHO05D001316 8.9e-13 76.6 71 64.8
Phvul.002G261500 Phaseolus vulgaris HOM05D001364 ORTHO05D001316 8.9e-13 76.6 69 75.4
Lalb_Chr07g0185281 Lupinus albus HOM05D001364 ORTHO05D001316 1.2e-12 76.3 71 64.8
Peaxi162Scf00295g01128 Petunia axillaris HOM05D001364 ORTHO05D001316 1.2e-12 76.3 68 69.1
BcaC03g18321 Brassica carinata HOM05D001364 ORTHO05D001316 2.0e-12 75.5 64 67.2
BcaC03g18341 Brassica carinata HOM05D001364 ORTHO05D001316 2.0e-12 75.5 64 67.2
C02p63970 Brassica napus HOM05D001364 ORTHO05D001316 2.0e-12 75.5 64 67.2
C02p64200 Brassica napus HOM05D001364 ORTHO05D001316 2.0e-12 75.5 64 67.2
CARHR279210 Cardamine hirsuta HOM05D001364 ORTHO05D001316 2.0e-12 75.5 73 67.1
Nitab4.5_0005282g0030 Nicotiana tabacum HOM05D001364 ORTHO05D001316 2.0e-12 75.5 70 65.7
Nitab4.5_0007452g0020 Nicotiana tabacum HOM05D001364 ORTHO05D001316 2.0e-12 75.5 70 65.7
Sp2g28360 Schrenkiella parvula HOM05D001364 ORTHO05D001316 2.0e-12 75.5 73 65.8
TWI77G0568 Tripterygium wilfordii HOM05D001364 ORTHO05D001316 2.0e-12 75.5 74 63.5
Actinidia28851 Actinidia chinensis HOM05D001364 ORTHO05D001316 2.6e-12 75.1 68 72.1
AL8G42820 Arabidopsis lyrata HOM05D001364 ORTHO05D001316 2.6e-12 75.1 73 64.4
AT5G65260 Arabidopsis thaliana HOM05D001364 ORTHO05D001316 2.6e-12 75.1 73 64.4
Sopen05g029970 Solanum pennellii HOM05D001364 ORTHO05D001316 2.6e-12 75.1 69 65.2
PGSC0003DMG400016798 Solanum tuberosum HOM05D001364 ORTHO05D001316 2.6e-12 75.1 69 65.2
arahy.Tifrunner.gnm1.ann1.A3Z183 Arachis hypogaea HOM05D001364 ORTHO05D001316 3.4e-12 74.7 69 65.2
arahy.Tifrunner.gnm1.ann1.XUU5QY Arachis hypogaea HOM05D001364 ORTHO05D001316 3.4e-12 74.7 69 65.2
Carub.0008s2613 Capsella rubella HOM05D001364 ORTHO05D001316 3.4e-12 74.7 71 62.0
Nn1g05423 Nelumbo nucifera HOM05D001364 ORTHO05D001316 5.8e-12 73.9 75 61.3
Carub.0006s0881 Capsella rubella HOM05D001364 ORTHO05D001316 1.3e-11 72.8 79 55.7
ClCG07G017390 Citrullus lanatus HOM05D001364 ORTHO05D001316 1.3e-11 72.8 68 75.0
Ciclev10026448m.g Citrus clementina HOM05D001364 ORTHO05D001316 1.3e-11 72.8 72 75.0
A02p43440 Brassica napus HOM05D001364 ORTHO05D017670 1.7e-11 72.4 65 67.7
A02p43810 Brassica napus HOM05D001364 ORTHO05D001316 1.7e-11 72.4 65 67.7
BraA02t09269Z Brassica rapa HOM05D001364 ORTHO05D017670 1.7e-11 72.4 65 67.7
MD00G1037000 Malus domestica HOM05D001364 ORTHO05D001316 1.7e-11 72.4 75 60.0
Psat7g056840 Pisum sativum HOM05D001364 ORTHO05D001316 3.8e-11 71.2 70 61.4
A06p32120 Brassica napus HOM05D001364 ORTHO05D001316 4.9e-11 70.9 73 65.8
C03p60820 Brassica napus HOM05D001364 ORTHO05D001316 4.9e-11 70.9 73 65.8
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 4.9e-11 70.9 73 65.8
BraA06t26140Z Brassica rapa HOM05D001364 ORTHO05D001316 4.9e-11 70.9 73 65.8
TPR.G7464 Trifolium pratense HOM05D001364 ORTHO05D001316 4.9e-11 70.9 70 71.4
TWI74G0657 Tripterygium wilfordii HOM05D001364 ORTHO05D001316 1.4e-10 69.3 74 70.3
Glyma.08G133900 Glycine max HOM05D001364 ORTHO05D001316 1.9e-10 68.9 75 61.3
Medtr8g089990 Medicago truncatula HOM05D001364 ORTHO05D001316 2.4e-10 68.6 70 68.6
THA.LOC104798864 Tarenaya hassleriana HOM05D001364 ORTHO05D001316 4.1e-10 67.8 74 64.9
Dinv08843 Davidia involucrata HOM05D001364 ORTHO05D001316 5.4e-10 67.4 75 62.7
Ca_17755_v3 Cicer arietinum L. HOM05D001364 ORTHO05D001316 7.1e-10 67.0 75 57.3
Lalb_Chr12g0203931 Lupinus albus HOM05D001364 ORTHO05D001316 7.1e-10 67.0 71 66.2
DCAR_014649 Daucus carota HOM05D001364 ORTHO05D001316 9.2e-10 66.6 77 54.5
CSS0049658 Camellia sinensis var. sinensis HOM05D001364 ORTHO05D001316 1.6e-09 65.9 71 70.4
PSO447G0151 Papaver somniferum HOM05D001364 ORTHO05D001316 1.6e-09 65.9 73 56.2
Sed0017052 Sechium edule HOM05D001364 ORTHO05D001316 3.5e-09 64.7 68 67.6
TAR374G0408 Trochodendron aralioides HOM05D001364 ORTHO05D001316 3.5e-09 64.7 71 56.3
Zm00001eb279340 Zea mays HOM05D001364 ORTHO05D001316 3.5e-09 64.7 62 59.7
Lj4C898G2 Lonicera japonica HOM05D001364 ORTHO05D001316 4.6e-09 64.3 78 64.1
CsaV3_UNG223550 Cucumis sativus L. HOM05D001364 ORTHO05D001316 6.0e-09 63.9 39 84.6
Zm00001eb255450 Zea mays HOM05D001364 ORTHO05D001316 7.8e-09 63.5 79 54.4
Solyc03g094090.3 Solanum lycopersicum HOM05D001364 ORTHO05D001316 1.0e-08 63.2 81 50.6
Actinidia07772 Actinidia chinensis HOM05D001364 ORTHO05D001316 1.3e-08 62.8 71 53.5
Prupe.2G269600 Prunus persica HOM05D001364 ORTHO05D001316 1.3e-08 62.8 73 54.8
TAR636G1484 Trochodendron aralioides HOM05D001364 ORTHO05D001316 1.3e-08 62.8 71 54.9
Pp3c22_11600 Physcomitrium patens HOM05D001364 ORTHO05D001316 1.7e-08 62.4 79 53.2
vmacro06855 Vaccinium macrocarpon HOM05D001364 ORTHO05D001316 1.7e-08 62.4 68 55.9
Zm00001eb193960 Zea mays HOM05D001364 ORTHO05D001316 1.7e-08 62.4 76 63.2
EL10Ac6g15138 Beta vulgaris HOM05D001364 ORTHO05D001316 2.3e-08 62.0 75 66.7
Phvul.L002072 Phaseolus vulgaris HOM05D001364 ORTHO05D001316 2.3e-08 62.0 72 52.8
Os06g0219600 Oryza sativa ssp. japonica HOM05D001364 ORTHO05D001316 3.0e-08 61.6 72 54.2
RcHm_v2.0_Chr1g0373171 Rosa chinensis HOM05D001364 ORTHO05D001316 3.0e-08 61.6 73 54.8
VMungo0720G0052 Vigna mungo HOM05D001364 ORTHO05D001316 3.0e-08 61.6 72 52.8
CANSAT56G1687 Cannabis sativa HOM05D001364 ORTHO05D001316 3.9e-08 61.2 72 51.4
MSTRG.3765 Avicennia marina HOM05D001364 ORTHO05D001316 5.1e-08 60.8 66 66.7
Glyma.10G191400 Glycine max HOM05D001364 ORTHO05D001316 5.1e-08 60.8 72 52.8
Glyma.20G198900 Glycine max HOM05D001364 ORTHO05D001316 5.1e-08 60.8 72 52.8
Os02g0757900 Oryza sativa ssp. japonica HOM05D001364 ORTHO05D001316 5.1e-08 60.8 79 51.9
PSO210G3552 Papaver somniferum HOM05D001364 ORTHO05D001316 5.1e-08 60.8 75 54.7
Gohir.A03G061300 Gossypium hirsutum HOM05D001364 ORTHO05D001316 6.6e-08 60.5 90 47.8
MBI04_g13863_MAGBIO Magnolia biondii HOM05D001364 ORTHO05D001316 6.6e-08 60.5 71 52.1
CiPaw.07G182700 Carya illinoinensis HOM05D001364 ORTHO05D001316 8.7e-08 60.1 73 54.8
DCAR_014648 Daucus carota HOM05D001364 ORTHO05D001316 8.7e-08 60.1 70 55.7
FvH4_7g26520 Fragaria vesca HOM05D001364 ORTHO05D001316 8.7e-08 60.1 73 53.4
FAN03G1271 Fragaria x ananassa HOM05D001364 ORTHO05D001316 8.7e-08 60.1 73 53.4
FAN06G0092 Fragaria x ananassa HOM05D001364 ORTHO05D001316 8.7e-08 60.1 73 53.4
FAN10G2134 Fragaria x ananassa HOM05D001364 ORTHO05D001316 8.7e-08 60.1 73 53.4
COL.COLO4_37303 Corchorus olitorius HOM05D001364 ORTHO05D001316 1.1e-07 59.7 82 50.0
FAN01G3060 Fragaria x ananassa HOM05D001364 ORTHO05D001316 1.1e-07 59.7 75 54.7
Gohir.D03G104700 Gossypium hirsutum HOM05D001364 ORTHO05D001316 1.1e-07 59.7 90 46.7
Gorai.003G110600 Gossypium raimondii HOM05D001364 ORTHO05D001316 1.1e-07 59.7 90 46.7
Hma1.2p1_0502F.1_g167970 Hydrangea macrophylla HOM05D001364 ORTHO05D001316 1.1e-07 59.7 67 55.2
Sopen03g024950 Solanum pennellii HOM05D001364 ORTHO05D001316 1.5e-07 59.3 72 54.2
Oeu015885.1 Olea europaea HOM05D001364 ORTHO05D001316 1.9e-07 58.9 74 50.0
TAR629G1498 Trochodendron aralioides HOM05D001364 ORTHO05D001316 1.9e-07 58.9 68 55.9
Actinidia31760 Actinidia chinensis HOM05D001364 ORTHO05D001316 2.5e-07 58.5 69 53.6
MSTRG.15719 Avicennia marina HOM05D001364 ORTHO05D001316 2.5e-07 58.5 73 61.6
Gohir.A12G195600 Gossypium hirsutum HOM05D001364 ORTHO05D001316 2.5e-07 58.5 81 48.1
Gohir.D12G198400 Gossypium hirsutum HOM05D001364 ORTHO05D001316 2.5e-07 58.5 81 48.1
Gorai.008G213100 Gossypium raimondii HOM05D001364 ORTHO05D001316 2.5e-07 58.5 81 48.1
Potri.015G110800 Populus trichocarpa HOM05D001364 ORTHO05D001316 2.5e-07 58.5 81 49.4
SMO141G0172 Selaginella moellendorffii HOM05D001364 ORTHO05D001316 2.5e-07 58.5 69 55.1
THA.LOC104801673 Tarenaya hassleriana HOM05D001364 ORTHO05D001316 2.5e-07 58.5 47 68.1
TAR310G0002 Trochodendron aralioides HOM05D001364 ORTHO05D001316 2.5e-07 58.5 68 52.9
ATR0665G544 Amborella trichopoda HOM05D001364 ORTHO05D001316 3.3e-07 58.2 72 52.8
MELO3C017602.2 Cucumis melo HOM05D001364 ORTHO05D001316 3.3e-07 58.2 68 67.6
CsaV3_4G004620 Cucumis sativus L. HOM05D001364 ORTHO05D001316 3.3e-07 58.2 36 83.3
CsaV3_UNG128990 Cucumis sativus L. HOM05D001364 ORTHO05D001316 3.3e-07 58.2 36 83.3
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 3.3e-07 58.2 36 83.3
Dinv21888 Davidia involucrata HOM05D001364 ORTHO05D001316 3.3e-07 58.2 68 52.9
FAN26G2773 Fragaria x ananassa HOM05D001364 ORTHO05D001316 3.3e-07 58.2 76 67.1
Gohir.A07G044900 Gossypium hirsutum HOM05D001364 ORTHO05D001316 3.3e-07 58.2 80 50.0
Gohir.D07G049400 Gossypium hirsutum HOM05D001364 ORTHO05D001316 3.3e-07 58.2 80 50.0
Gorai.001G052500 Gossypium raimondii HOM05D001364 ORTHO05D001316 3.3e-07 58.2 80 50.0
Medtr1g073000 Medicago truncatula HOM05D001364 ORTHO05D001316 3.3e-07 58.2 76 48.7
TPR.G18549 Trifolium pratense HOM05D001364 ORTHO05D001316 3.3e-07 58.2 76 48.7
Thecc.03G145000 Theobroma cacao HOM05D001364 ORTHO05D001316 4.3e-07 57.8 82 48.8
TWI39G0945 Tripterygium wilfordii HOM05D001364 ORTHO05D001316 4.3e-07 57.8 73 50.7
Actinidia13624 Actinidia chinensis HOM05D001569 ORTHO05D001316 5.6e-07 57.4 68 52.9
CSS0040896 Camellia sinensis var. sinensis HOM05D001364 ORTHO05D001316 5.6e-07 57.4 69 50.7
CiPaw.08G042900 Carya illinoinensis HOM05D001364 ORTHO05D001316 5.6e-07 57.4 73 50.7
MD01G1174000 Malus domestica HOM05D001364 ORTHO05D001316 5.6e-07 57.4 76 48.7
AL53U10020 Arabidopsis lyrata HOM05D001364 ORTHO05D001316 7.3e-07 57.0 56 58.9
AL53U10070 Arabidopsis lyrata HOM05D001364 ORTHO05D001316 7.3e-07 57.0 56 58.9
Hma1.2p1_1014F.1_g247860 Hydrangea macrophylla HOM05D001364 ORTHO05D001316 7.3e-07 57.0 76 48.7
Lj4g0023301 Lotus japonicus HOM05D001364 ORTHO05D001316 7.3e-07 57.0 65 56.9
MD07G1240900 Malus domestica HOM05D001364 ORTHO05D001316 7.3e-07 57.0 75 49.3
SalBow5G3912 Salvia bowleyana HOM05D001364 ORTHO05D001316 7.3e-07 57.0 71 64.8
SalBow5G5532 Salvia bowleyana HOM05D001364 ORTHO05D001316 7.3e-07 57.0 71 64.8
CSS0029113 Camellia sinensis var. sinensis HOM05D001364 ORTHO05D017670 1.2e-06 56.2 49 61.2
Migut.L00149 Erythranthe guttata HOM05D001364 ORTHO05D001316 1.6e-06 55.8 69 65.2
Cc00_g20090 Coffea canephora HOM05D001364 ORTHO05D001316 2.1e-06 55.5 49 61.2
Psat6g134520 Pisum sativum HOM05D001364 ORTHO05D001316 2.1e-06 55.5 75 48.0
Sabra12G0082600 Salix brachista HOM05D001364 ORTHO05D001316 2.1e-06 55.5 76 50.0
Solyc11g009090.2 Solanum lycopersicum HOM05D001364 ORTHO05D001316 2.1e-06 55.5 76 60.5
Sopen11g004880 Solanum pennellii HOM05D001364 ORTHO05D001316 2.1e-06 55.5 76 60.5
CsaV3_6G045300 Cucumis sativus L. HOM05D001364 ORTHO05D001316 2.8e-06 55.1 65 67.7
Manes.06G129500 Manihot esculenta HOM05D001364 ORTHO05D001316 2.8e-06 55.1 81 46.9
SGA_v2.0_scaffold335G49110 Striga asiatica HOM05D001364 ORTHO05D001316 2.8e-06 55.1 71 66.2
BraA03t10922Z Brassica rapa HOM05D001364 ORTHO05D001316 3.6e-06 54.7 82 43.9
Duzib264G0343 Durio zibethinus HOM05D001364 ORTHO05D001316 3.6e-06 54.7 75 64.0
Lsat_1_v5_gn_9_58420 Lactuca sativa HOM05D001364 ORTHO05D001316 3.6e-06 54.7 75 46.7
Potri.012G115100 Populus trichocarpa HOM05D001364 ORTHO05D001316 3.6e-06 54.7 76 48.7
HPP92_009248 Vanilla planifolia HOM05D001364 ORTHO05D001316 3.6e-06 54.7 50 68.0
ClCG07G017210 Citrullus lanatus HOM05D001364 ORTHO05D001316 4.7e-06 54.3 78 47.4
HanXRQChr11g0324731 Helianthus annuus HOM05D001364 ORTHO05D001316 6.2e-06 53.9 69 49.3
Lalb_Chr06g0169591 Lupinus albus HOM05D001364 ORTHO05D001316 6.2e-06 53.9 76 50.0
PSO063G3935 Papaver somniferum HOM05D001364 ORTHO05D001316 8.1e-06 53.5 67 52.2
PSO782G2358 Papaver somniferum HOM05D001364 ORTHO05D001316 8.1e-06 53.5 67 52.2
PGSC0003DMG400016158 Solanum tuberosum HOM05D001364 ORTHO05D001316 8.1e-06 53.5 71 59.2
GSVIVG01024485001 Vitis vinifera HOM05D001364 ORTHO05D001316 8.1e-06 53.5 80 46.2


User provided reference genes

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