Gene: Sopen05g029970
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen05g029970
- Transcript Identifier Sopen05g029970.1
- Gene Type Coding gene
- Location Spenn-ch05 : 73732223-73740268 : positive
Gene Family Information
- ID HOM05D001364
- #Genes/#Species 458/99
- Phylogenetic origin
- ID ORTHO05D001316
- #Genes/#Species 434/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen05g029970.1
Descriptions
- Description RNA-binding (RRM/RBD/RNP motifs) family protein | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein .
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G65260 |
| GO:0008143 | ISO | PLAZA Integrative Orthology | poly(A) binding | AT5G10350 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G65260 |
| GO:0043621 | ISO | PLAZA Integrative Orthology | protein self-association | AT5G10350 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G10350 |
| GO:0016607 | ISO | PLAZA Integrative Orthology | nuclear speck | AT5G65260 |
| GO:0005774 | ISO | PLAZA Integrative Orthology | vacuolar membrane | AT5G10350 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.3.1.1.2 | RNA processing.RNA 3'-end processing.mRNA polyadenylation.poly(A) RNA polymerase activity.poly(A) RNA polymerase regulatory protein |