Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 0.0e+00 1166.0 582 100.0
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 1.6e-295 1018.8 551 93.6
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 4.8e-284 980.7 551 90.2
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 7.5e-269 930.2 552 85.5
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 2.1e-263 912.1 552 84.6
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 9.0e-214 747.3 555 69.5
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 4.5e-213 745.0 553 69.4
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 3.2e-211 738.8 551 69.9
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 6.0e-210 734.6 536 70.3
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 3.0e-209 732.3 578 67.0
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 1.5e-208 729.9 553 69.6
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 1.6e-207 726.5 567 67.5
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 2.1e-207 726.1 573 66.5
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 2.4e-206 722.6 585 66.0
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 9.0e-206 720.7 552 67.2
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 3.4e-205 718.8 577 65.7
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.7e-204 716.5 585 65.5
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 2.9e-204 715.7 552 67.6
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 2.9e-204 715.7 554 67.9
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 1.4e-203 713.4 609 62.9
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 1.6e-202 709.9 553 67.5
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 2.7e-202 709.1 557 68.2
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 2.7e-202 709.1 557 66.8
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.8e-201 706.4 558 68.1
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 1.8e-201 706.4 553 66.7
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 3.0e-201 705.7 559 67.4
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 3.0e-201 705.7 557 67.7
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 5.1e-201 704.9 564 67.2
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 3.3e-200 702.2 556 66.4
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 4.3e-200 701.8 556 66.4
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 7.4e-200 701.0 556 66.0
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 2.8e-199 699.1 559 67.1
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 6.3e-199 698.0 545 67.0
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 1.1e-198 697.2 566 65.5
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 5.9e-197 691.4 561 65.6
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 5.0e-196 688.3 554 65.7
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 4.2e-195 685.3 485 72.0
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 3.0e-193 679.1 513 68.2
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 1.1e-192 677.2 519 68.0
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 2.6e-192 676.0 536 64.9
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 4.4e-192 675.2 523 67.7
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 9.7e-192 674.1 505 67.5
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 3.7e-191 672.2 553 62.9
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 5.3e-190 668.3 553 62.6
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 1.5e-189 666.8 553 64.0
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 7.7e-189 664.5 560 63.6
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 7.7e-189 664.5 520 67.1
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 1.7e-188 663.3 460 75.2
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 2.2e-188 662.9 525 67.0
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 9.4e-187 657.5 553 62.6
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 2.7e-186 656.0 523 65.8
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 2.7e-186 656.0 547 64.2
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 1.1e-184 650.6 569 62.0
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 1.5e-184 650.2 552 62.0
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 4.4e-184 648.7 488 67.4
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 1.3e-183 647.1 525 65.7
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 2.2e-183 646.4 611 59.2
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 4.8e-183 645.2 468 72.6
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 1.2e-181 640.6 559 62.1
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 4.5e-181 638.6 557 61.9
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 3.8e-180 635.6 499 66.7
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 5.0e-180 635.2 564 61.2
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 5.0e-180 635.2 553 62.7
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 4.2e-179 632.1 567 61.0
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 5.5e-179 631.7 567 61.2
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 9.4e-179 630.9 494 67.0
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 9.4e-179 630.9 522 63.4
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 3.6e-178 629.0 564 60.6
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 6.1e-178 628.2 562 60.5
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 8.0e-178 627.9 562 60.5
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 8.0e-178 627.9 564 60.5
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 1.8e-177 626.7 495 65.9
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 2.3e-177 626.3 539 62.0
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 1.5e-176 623.6 494 65.4
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 4.4e-176 622.1 540 61.5
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 1.3e-175 620.5 568 59.2
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 8.2e-175 617.8 533 62.9
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 4.1e-174 615.5 533 62.5
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 4.1e-174 615.5 498 64.7
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 2.0e-173 613.2 544 61.6
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 5.0e-172 608.6 519 63.4
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 5.5e-171 605.1 568 58.1
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 4.0e-169 599.0 451 67.6
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 6.8e-169 598.2 536 59.1
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 2.0e-168 596.7 526 60.6
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 1.4e-166 590.5 527 60.2
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 2.4e-166 589.7 545 57.8
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 1.6e-165 587.0 426 71.1
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 3.5e-165 585.9 485 62.9
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 4.2e-163 578.9 479 64.1
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 6.8e-161 571.6 535 57.0
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 1.1e-155 554.3 447 65.3
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 1.9e-147 526.9 477 58.1
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 8.9e-145 518.1 508 55.7
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 7.5e-144 515.0 514 55.3
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 9.9e-112 408.3 294 70.4
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 9.9e-104 381.7 345 55.1
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 2.3e-92 344.0 270 67.4
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 6.7e-92 342.4 268 65.3
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 1.4e-89 334.7 269 65.8
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 1.9e-83 314.3 479 40.3
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 1.7e-82 311.2 311 55.9
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 9.4e-78 295.4 447 38.3
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 1.1e-75 288.5 198 72.7
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 1.5e-75 288.1 167 80.8
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 5.7e-67 259.6 420 36.4
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 7.4e-67 259.2 380 40.0
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 1.6e-53 214.9 125 76.0
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 4.0e-52 210.3 164 64.6
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 6.8e-52 209.5 125 76.8
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 2.6e-51 207.6 188 56.9
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 2.4e-49 201.1 194 54.1
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 7.2e-46 189.5 184 56.5
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 2.4e-41 174.5 346 34.1
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 6.4e-34 149.8 80 86.2
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 2.3e-31 141.4 223 42.6
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 1.1e-28 132.5 126 61.9
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 1.9e-25 121.7 92 69.6
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 8.1e-21 106.3 71 67.6
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 3.1e-20 104.4 83 63.9
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 4.9e-18 97.1 100 57.0
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 3.2e-17 94.4 53 81.1
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 3.5e-16 90.9 102 54.9
Actinidia33672 Actinidia chinensis HOM05D005980 ORTHO05D007618 5.6e-14 83.6 94 54.3
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 4.7e-13 80.5 72 62.5
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 6.2e-13 80.1 92 46.7
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 1.8e-12 78.6 155 39.4
Actinidia33673 Actinidia chinensis HOM05D005980 ORTHO05D007618 6.8e-12 76.6 127 44.9
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 2.0e-11 75.1 46 67.4
Cpa.g.c48158 Carica papaya HOM05D005980 ORTHO05D007618 6.6e-07 60.1 32 84.4


User provided reference genes

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