Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 2026.1 1086 100.0
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1830.1 1014 96.9
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1738.4 1020 90.2
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1697.2 1029 87.4
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1339.3 1024 71.2
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1328.5 1032 71.0
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1324.7 1024 70.3
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1316.6 1032 70.1
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1309.7 1053 68.5
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1299.6 1079 67.0
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1294.6 1024 69.5
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1294.6 1024 69.5
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1287.3 1038 67.9
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1286.2 1030 68.2
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1285.0 1063 68.3
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1284.6 1030 68.5
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1279.6 1056 67.1
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1279.6 1046 69.3
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1276.9 1044 69.0
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1275.8 1066 67.3
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1274.6 1043 68.2
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1272.7 1047 67.6
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1268.4 1036 68.0
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1266.9 1026 66.5
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1263.4 1031 66.8
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1262.3 1040 67.7
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1261.5 1037 67.1
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1254.2 1038 67.6
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1253.0 1021 68.2
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1246.9 1038 66.4
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1246.5 1028 66.9
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1246.1 1028 66.6
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1239.6 1025 68.1
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1234.9 1023 65.9
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1234.9 1023 65.9
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1234.2 1027 66.1
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1233.8 1023 65.9
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1233.8 1018 65.9
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1231.1 1028 64.9
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1229.9 1023 66.2
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1229.9 1026 66.0
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1229.5 1023 66.3
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1229.5 1023 66.6
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1226.5 1024 65.3
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1224.5 1044 64.7
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1222.6 1024 65.7
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1221.1 1026 65.2
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1219.9 1043 64.6
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1219.1 1021 65.4
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1219.1 1018 66.0
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1218.4 1023 65.6
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1216.8 1023 65.9
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1213.4 1024 65.2
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1213.0 1023 65.6
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1212.6 1023 65.0
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1211.8 1022 65.9
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1211.4 1019 64.9
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1209.1 1021 64.3
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1206.4 1021 64.3
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1204.1 1161 59.7
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1201.4 1058 63.8
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1200.7 1033 64.6
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1197.2 1027 64.6
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1194.9 1024 64.4
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1194.1 1063 62.7
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1186.8 1027 64.9
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1181.0 1024 64.2
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1180.6 1072 62.2
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1174.5 1023 62.4
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1174.1 1059 61.6
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1173.7 1023 62.5
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1172.5 1025 63.8
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1167.9 1020 64.6
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1164.8 1049 61.2
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1157.1 1018 63.0
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1147.1 1026 63.2
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1116.7 1027 60.9
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 0.0e+00 1115.9 1035 58.3
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1111.7 963 64.2
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1092.8 1020 58.9
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 0.0e+00 1081.2 891 66.1
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 0.0e+00 1081.2 1044 57.2
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1079.7 1013 59.3
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1077.0 867 67.9
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 0.0e+00 1076.6 866 68.2
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 2.4e-308 1062.4 881 67.1
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 9.0e-308 1060.4 1024 58.7
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 1.8e-303 1046.2 1040 56.7
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 3.2e-273 945.7 1024 53.2
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 2.6e-270 936.0 1024 54.8
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 6.9e-268 927.9 1037 54.3
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 9.4e-265 917.5 1041 52.5
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 7.4e-262 907.9 1086 50.1
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 1.8e-260 903.3 1092 48.9
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 1.0e-255 887.5 1045 49.5
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 8.3e-237 824.7 815 57.8
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.3e-210 737.6 755 54.7
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 1.4e-207 727.6 634 64.7
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 1.4e-196 691.0 597 64.3
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 1.2e-195 688.0 660 58.9
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 1.0e-194 684.9 984 46.2
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 1.2e-190 671.4 849 49.5
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 2.5e-185 653.7 585 62.1
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 2.9e-157 560.5 572 56.3
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 4.4e-153 546.6 1025 34.0
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 2.0e-137 494.6 395 65.1
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 1.4e-130 471.9 365 64.1
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 3.6e-123 447.2 294 78.2
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.0e-122 445.7 305 70.5
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 1.6e-118 431.8 380 58.9
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 8.6e-117 426.0 276 77.5
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 9.5e-116 422.5 1038 30.3
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 1.0e-114 419.1 270 80.4
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 2.6e-113 414.5 271 76.8
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 2.5e-108 397.9 367 58.0
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 9.8e-105 386.0 1290 30.3
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 1.1e-98 365.9 1007 32.0
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 3.1e-90 337.8 824 32.0
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.4e-88 330.1 286 59.1
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 1.6e-83 315.5 225 74.2
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 2.8e-83 314.7 168 92.3
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 7.6e-73 280.0 242 62.4
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.9e-71 275.4 203 68.0
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 7.6e-65 253.4 184 72.8
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 4.6e-62 244.2 138 88.4
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.7e-56 225.7 206 61.2
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 3.5e-54 218.0 150 74.0
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.3e-52 211.5 137 72.3
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 2.8e-51 208.4 201 58.2
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 1.8e-50 205.7 834 28.5
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 1.1e-47 196.4 105 91.4
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.1e-47 196.4 129 70.5
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 3.9e-45 188.0 129 67.4
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 3.3e-44 184.9 166 61.4
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.3e-43 180.6 131 69.5
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 2.1e-38 165.6 93 87.1
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 2.7e-38 165.2 123 70.7
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.0e-36 159.1 101 77.2
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 3.1e-34 151.8 206 49.5
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 1.6e-25 122.9 139 53.2
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 2.6e-25 122.1 85 67.1
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 7.7e-25 120.6 80 71.2
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 5.0e-24 117.9 171 38.6
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 4.2e-15 88.2 42 97.6
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 2.0e-09 69.3 45 75.6


User provided reference genes

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