Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 3.9e-213 744.6 391 100.0
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 5.0e-200 701.0 391 93.9
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 3.5e-185 651.7 377 89.9
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 4.5e-169 598.2 370 84.6
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 2.2e-163 579.3 379 80.7
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 2.2e-163 579.3 378 82.0
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 4.9e-163 578.2 376 81.1
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 1.8e-162 576.2 390 78.7
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 4.1e-162 575.1 378 81.5
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.2e-161 573.5 370 81.9
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 2.0e-161 572.8 346 85.5
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 4.6e-161 571.6 368 80.7
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 5.9e-161 571.2 390 78.2
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.9e-161 571.2 390 78.2
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 5.9e-161 571.2 370 81.4
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 7.8e-161 570.9 355 82.0
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.3e-160 570.1 386 78.8
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 6.6e-160 567.8 363 80.4
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 6.6e-160 567.8 361 80.9
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 6.6e-160 567.8 345 84.3
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 2.5e-159 565.8 346 83.2
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.5e-159 565.8 361 80.6
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 7.3e-159 564.3 376 80.3
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.2e-158 563.5 378 79.4
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 2.1e-158 562.8 360 81.7
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.1e-158 562.8 376 78.2
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 2.8e-158 562.4 323 87.0
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.6e-158 562.0 346 83.5
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 1.8e-157 559.7 361 80.6
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 3.1e-157 558.9 391 77.2
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 6.8e-157 557.8 338 83.4
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 6.8e-157 557.8 323 85.8
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 6.8e-157 557.8 353 81.0
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 8.9e-157 557.4 369 78.6
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 8.9e-157 557.4 323 86.1
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 1.5e-156 556.6 323 86.1
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.5e-156 556.6 390 77.2
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.5e-156 556.6 390 77.2
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 1.5e-156 556.6 353 80.7
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.6e-156 555.8 358 80.2
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.6e-156 555.8 355 81.4
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 2.6e-156 555.8 340 82.4
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 3.4e-156 555.4 361 79.8
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 4.4e-156 555.1 352 81.0
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 4.4e-156 555.1 347 83.3
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 9.8e-156 553.9 390 75.6
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 9.8e-156 553.9 379 77.6
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 9.8e-156 553.9 355 80.0
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 1.3e-155 553.5 353 81.0
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 2.2e-155 552.7 355 80.0
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 4.9e-155 551.6 349 82.5
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 4.9e-155 551.6 390 76.7
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 4.9e-155 551.6 354 81.1
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 6.4e-155 551.2 372 76.6
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 6.4e-155 551.2 345 81.2
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 8.3e-155 550.8 347 82.4
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 8.3e-155 550.8 345 82.0
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 1.4e-154 550.1 385 76.6
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 1.4e-154 550.1 385 76.6
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 1.4e-154 550.1 323 85.8
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 1.4e-154 550.1 389 75.8
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.9e-154 549.7 347 82.4
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 2.4e-154 549.3 386 75.4
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 4.1e-154 548.5 386 75.1
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 4.1e-154 548.5 383 75.5
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 5.4e-154 548.1 386 75.4
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.2e-153 547.0 344 80.8
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 2.0e-153 546.2 348 79.6
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 2.0e-153 546.2 385 75.8
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 2.0e-153 546.2 345 80.9
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 2.0e-153 546.2 343 80.8
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 3.5e-153 545.4 356 79.2
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 3.5e-153 545.4 355 80.3
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 3.5e-153 545.4 347 80.7
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 4.6e-153 545.0 386 74.1
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 4.6e-153 545.0 360 78.9
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 4.6e-153 545.0 363 78.8
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 4.6e-153 545.0 386 75.9
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 6.0e-153 544.7 354 80.5
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 1.3e-152 543.5 356 79.2
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 1.3e-152 543.5 356 79.2
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 1.3e-152 543.5 362 79.3
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 1.3e-152 543.5 366 76.8
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 1.7e-152 543.1 356 78.7
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 1.7e-152 543.1 356 78.7
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.7e-152 543.1 383 75.7
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 2.3e-152 542.7 384 75.5
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 2.3e-152 542.7 334 82.0
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 2.3e-152 542.7 387 76.7
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 6.6e-152 541.2 353 79.6
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 6.6e-152 541.2 353 79.6
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 1.1e-151 540.4 383 74.9
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 1.5e-151 540.0 389 74.8
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 3.3e-151 538.9 383 74.9
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 5.6e-151 538.1 382 75.4
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 5.6e-151 538.1 366 77.3
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 9.5e-151 537.3 392 74.2
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 2.8e-150 535.8 349 80.5
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.8e-150 535.8 341 80.4
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 4.7e-150 535.0 383 74.4
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.3e-149 532.7 301 88.0
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 2.3e-149 532.7 327 82.6
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 5.2e-149 531.6 378 74.6
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 8.9e-149 530.8 454 66.5
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 2.0e-148 529.6 363 76.6
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 2.0e-148 529.6 373 75.1
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.6e-148 529.3 352 78.4
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 4.4e-148 528.5 447 66.4
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 4.4e-148 528.5 439 67.0
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 5.8e-148 528.1 318 84.9
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 1.7e-147 526.6 354 77.1
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 4.9e-147 525.0 353 75.9
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 1.4e-146 523.5 354 76.3
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 1.9e-146 523.1 325 80.0
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 4.1e-146 521.9 333 79.0
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 7.1e-146 521.2 353 77.6
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 7.1e-146 521.2 332 77.4
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 4.6e-145 518.5 354 74.9
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.6e-145 518.5 390 71.3
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.3e-144 516.9 349 75.9
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 1.7e-144 516.5 388 71.1
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.3e-144 516.2 348 78.7
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 3.9e-144 515.4 373 71.0
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.5e-143 513.5 368 71.2
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 1.9e-143 513.1 406 68.0
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 3.3e-143 512.3 354 76.6
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 7.3e-143 511.1 333 79.3
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 9.5e-143 510.8 354 76.3
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 4.7e-142 508.4 325 80.3
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 9.9e-140 500.7 385 71.2
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 9.9e-140 500.7 284 87.7
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 1.3e-139 500.4 284 87.7
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 9.2e-138 494.2 361 72.9
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 3.0e-136 489.2 290 84.8
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 8.6e-136 487.6 383 69.7
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.1e-135 487.3 325 76.3
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 3.6e-134 482.3 344 71.8
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 1.4e-133 480.3 343 72.3
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 5.8e-132 474.9 312 76.6
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.1e-130 470.7 312 76.3
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.2e-129 467.2 312 75.3
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.3e-128 463.8 310 79.0
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 5.1e-128 461.8 299 77.6
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 1.1e-127 460.7 321 72.9
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 7.3e-127 458.0 321 72.0
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 1.6e-126 456.8 299 75.6
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 8.1e-126 454.5 387 62.8
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 7.1e-114 414.8 297 70.0
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 2.1e-113 413.3 275 81.8
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 5.3e-109 398.7 338 63.3
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 1.1e-106 391.0 250 79.2
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 2.1e-105 386.7 264 78.4
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.4e-98 364.0 289 64.0
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 1.0e-91 341.3 291 67.4
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 3.3e-79 299.7 300 58.3
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 6.1e-73 278.9 189 77.2
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 1.4e-69 267.7 161 84.5
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 5.0e-67 259.2 357 47.6
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 8.5e-67 258.5 384 44.3
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 1.4e-48 198.0 112 83.9
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 3.4e-47 193.4 113 85.0
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 9.5e-42 175.3 174 60.3
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 9.5e-42 175.3 174 60.3
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 1.6e-41 174.5 200 55.5
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 3.3e-34 150.2 102 72.5
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 1.6e-33 147.9 100 74.0
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 1.6e-33 147.9 100 74.0
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 2.8e-33 147.1 304 34.2
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 1.1e-32 145.2 100 73.0
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 6.8e-32 142.5 98 72.4
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 8.9e-32 142.1 104 69.2
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 2.9e-30 137.1 105 64.8
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 4.1e-29 133.3 104 64.4
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 8.6e-19 99.0 64 75.0
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.8e-16 91.3 91 58.2
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 2.4e-16 90.9 67 70.1
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 3.1e-16 90.5 61 77.0
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 4.8e-09 66.6 36 80.6
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 5.3e-08 63.2 36 77.8


User provided reference genes

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