Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1428900 Malus domestica HOM05D000688 ORTHO05D005697 1.5e-37 159.1 81 100.0
MD08G1237100 Malus domestica HOM05D000688 ORTHO05D005697 2.9e-30 134.8 75 90.7
CiPaw.06G056500 Carya illinoinensis HOM05D000688 ORTHO05D005697 2.0e-26 122.1 76 78.9
TAR633G0469 Trochodendron aralioides HOM05D000688 ORTHO05D005697 2.6e-26 121.7 78 76.9
Atru.chr12.1303 Acer truncatum HOM05D000688 ORTHO05D005697 7.5e-26 120.2 78 75.6
MELO3C011383.2 Cucumis melo HOM05D000688 ORTHO05D005697 9.8e-26 119.8 75 77.3
Sed0023837 Sechium edule HOM05D000688 ORTHO05D005697 9.8e-26 119.8 78 75.6
Duzib106G0283 Durio zibethinus HOM05D000688 ORTHO05D005697 1.3e-25 119.4 78 75.6
FAN04G2303 Fragaria x ananassa HOM05D000688 ORTHO05D005697 1.3e-25 119.4 77 75.3
Gohir.A10G189000 Gossypium hirsutum HOM05D000688 ORTHO05D005697 1.3e-25 119.4 78 76.9
CsaV3_6G035750 Cucumis sativus L. HOM05D000688 ORTHO05D005697 2.2e-25 118.6 75 76.0
Thecc.10G143000 Theobroma cacao HOM05D000688 ORTHO05D005697 2.9e-25 118.2 78 75.6
ClCG08G010800 Citrullus lanatus HOM05D000688 ORTHO05D005697 3.7e-25 117.9 75 76.0
FvH4_7g07420 Fragaria vesca HOM05D000688 ORTHO05D005697 3.7e-25 117.9 77 75.3
FAN01G1757 Fragaria x ananassa HOM05D000688 ORTHO05D005697 3.7e-25 117.9 77 75.3
FAN06G2747 Fragaria x ananassa HOM05D000688 ORTHO05D005697 3.7e-25 117.9 77 75.3
FAN10G3028 Fragaria x ananassa HOM05D000688 ORTHO05D005697 3.7e-25 117.9 77 75.3
Manes.04G156600 Manihot esculenta HOM05D000688 ORTHO05D005697 3.7e-25 117.9 75 78.7
Prupe.1G574600 Prunus persica HOM05D000688 ORTHO05D005697 4.9e-25 117.5 75 77.3
RcHm_v2.0_Chr1g0339591 Rosa chinensis HOM05D000688 ORTHO05D005697 4.9e-25 117.5 77 75.3
Eucgr.G03213 Eucalyptus grandis HOM05D000688 ORTHO05D005697 6.4e-25 117.1 78 74.4
FAN08G1568 Fragaria x ananassa HOM05D000688 ORTHO05D005697 6.4e-25 117.1 77 75.3
Lalb_Chr03g0032171 Lupinus albus HOM05D000688 ORTHO05D005697 6.4e-25 117.1 78 75.6
PGR031G2571 Punica granatum HOM05D000688 ORTHO05D005697 6.4e-25 117.1 78 75.6
Aqoxy2G00414 Aquilegia oxysepala HOM05D000688 ORTHO05D005697 8.3e-25 116.7 78 71.8
Gohir.D10G196900 Gossypium hirsutum HOM05D000688 ORTHO05D005697 8.3e-25 116.7 75 74.7
Gorai.011G220100 Gossypium raimondii HOM05D000688 ORTHO05D005697 8.3e-25 116.7 75 74.7
Nn1g02628 Nelumbo nucifera HOM05D000688 ORTHO05D005697 8.3e-25 116.7 78 74.4
Ciclev10024768m.g Citrus clementina HOM05D000688 ORTHO05D005697 1.1e-24 116.3 78 70.5
Glyma.17G183400 Glycine max HOM05D000688 ORTHO05D005697 1.8e-24 115.5 77 74.0
Glyma.13G192600 Glycine max HOM05D000688 ORTHO05D005697 4.1e-24 114.4 75 73.3
AUR62029096 Chenopodium quinoa HOM05D000688 ORTHO05D005697 5.4e-24 114.0 78 70.5
FvH4_5g25870 Fragaria vesca HOM05D000688 ORTHO05D005697 5.4e-24 114.0 77 74.0
AUR62015017 Chenopodium quinoa HOM05D000688 ORTHO05D005697 1.2e-23 112.8 78 69.2
DCAR_019382 Daucus carota HOM05D000688 ORTHO05D005697 1.2e-23 112.8 78 76.9
Sabra01G0022100 Salix brachista HOM05D000688 ORTHO05D005697 1.6e-23 112.5 74 71.6
arahy.Tifrunner.gnm1.ann1.078WK3 Arachis hypogaea HOM05D000688 ORTHO05D005697 2.0e-23 112.1 78 71.8
arahy.Tifrunner.gnm1.ann1.91DTPA Arachis hypogaea HOM05D000688 ORTHO05D005697 2.0e-23 112.1 78 71.8
arahy.Tifrunner.gnm1.ann1.92109M Arachis hypogaea HOM05D000688 ORTHO05D005697 2.0e-23 112.1 78 71.8
CSS0007151 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D005697 2.7e-23 111.7 79 75.9
CSS0026386 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D005697 2.7e-23 111.7 79 75.9
FAN13G3127 Fragaria x ananassa HOM05D000688 ORTHO05D005697 3.5e-23 111.3 77 72.7
Lalb_Chr01g0007401 Lupinus albus HOM05D000688 ORTHO05D005697 3.5e-23 111.3 78 70.5
Medtr4g124030 Medicago truncatula HOM05D000688 ORTHO05D005697 3.5e-23 111.3 75 72.0
Potri.001G030750 Populus trichocarpa HOM05D000688 ORTHO05D005697 3.5e-23 111.3 74 70.3
VMungo1127G1973 Vigna mungo HOM05D000688 ORTHO05D005697 3.5e-23 111.3 76 69.7
Rhsim07G0068800 Rhododendron simsii HOM05D000688 ORTHO05D005697 4.6e-23 110.9 75 74.7
Sc10g0004560 Simmondsia chinensis HOM05D000688 ORTHO05D005697 4.6e-23 110.9 75 74.7
Lj3g0023740 Lotus japonicus HOM05D000688 ORTHO05D005697 7.8e-23 110.2 78 67.9
TPR.G8542 Trifolium pratense HOM05D000688 ORTHO05D005697 7.8e-23 110.2 73 69.9
Dinv32011 Davidia involucrata HOM05D000688 ORTHO05D005697 1.0e-22 109.8 78 71.8
Psat2g146640 Pisum sativum HOM05D000688 ORTHO05D005697 1.3e-22 109.4 77 68.8
THA.LOC104799325 Tarenaya hassleriana HOM05D000688 ORTHO05D005697 1.3e-22 109.4 79 69.6
ECA236G4343 Erigeron canadensis HOM05D000688 ORTHO05D005697 1.7e-22 109.0 75 72.0
Ah.10g030030 Amaranthus hybridus HOM05D000688 ORTHO05D005697 2.3e-22 108.6 78 67.9
Ca_00571_v3 Cicer arietinum L. HOM05D000688 ORTHO05D005697 2.3e-22 108.6 73 69.9
Nitab4.5_0003951g0030 Nicotiana tabacum HOM05D000688 ORTHO05D005697 2.3e-22 108.6 81 69.1
EL10Ac2g02765 Beta vulgaris HOM05D000688 ORTHO05D005697 3.9e-22 107.8 78 67.9
BcaC06g35474 Brassica carinata HOM05D000688 ORTHO05D005697 3.9e-22 107.8 77 68.8
C07p15670 Brassica napus HOM05D000688 ORTHO05D005697 3.9e-22 107.8 77 68.8
BolC7t42057H Brassica oleracea HOM05D000688 ORTHO05D005697 3.9e-22 107.8 77 68.8
Nitab4.5_0001542g0120 Nicotiana tabacum HOM05D000688 ORTHO05D005697 5.0e-22 107.5 81 67.9
A07p10170 Brassica napus HOM05D000688 ORTHO05D005697 6.6e-22 107.1 77 67.5
BraA07t28807Z Brassica rapa HOM05D000688 ORTHO05D005697 6.6e-22 107.1 77 67.5
BraA07t28810Z Brassica rapa HOM05D000688 ORTHO05D005697 6.6e-22 107.1 77 67.5
CAN.G1393.16 Capsicum annuum HOM05D000688 ORTHO05D005697 6.6e-22 107.1 76 68.4
Cc11_g03150 Coffea canephora HOM05D000688 ORTHO05D005697 6.6e-22 107.1 78 70.5
Phvul.011G201300 Phaseolus vulgaris HOM05D000688 ORTHO05D005697 6.6e-22 107.1 81 66.7
Hund15747 Selenicereus undatus HOM05D000688 ORTHO05D005697 6.6e-22 107.1 76 65.8
Lsat_1_v5_gn_7_31561 Lactuca sativa HOM05D000688 ORTHO05D005697 8.6e-22 106.7 78 70.5
Lj7C267G3 Lonicera japonica HOM05D000688 ORTHO05D005697 1.5e-21 105.9 77 68.8
CANSAT01G0672 Cannabis sativa HOM05D000688 ORTHO05D005697 1.9e-21 105.5 78 66.7
AL1G43780 Arabidopsis lyrata HOM05D000688 ORTHO05D005697 2.5e-21 105.1 78 67.9
BcaB03g13851 Brassica carinata HOM05D000688 ORTHO05D005697 2.5e-21 105.1 78 66.7
Ca_00570_v3 Cicer arietinum L. HOM05D000688 ORTHO05D005697 2.5e-21 105.1 73 68.5
Sp1g25790 Schrenkiella parvula HOM05D000688 ORTHO05D005697 2.5e-21 105.1 75 69.3
AT1G29940 Arabidopsis thaliana HOM05D000688 ORTHO05D005697 3.3e-21 104.8 74 68.9
QL04p021099 Quercus lobata HOM05D000688 ORTHO05D005697 3.3e-21 104.8 79 65.8
TWI15G1069 Tripterygium wilfordii HOM05D000688 ORTHO05D005697 4.3e-21 104.4 70 74.3
Aa31LG10G7670 Aethionema arabicum HOM05D000688 ORTHO05D005697 5.6e-21 104.0 79 67.1
SGA_v2.0_scaffold260G45868 Striga asiatica HOM05D000688 ORTHO05D005697 5.6e-21 104.0 80 70.0
COL.COLO4_20728 Corchorus olitorius HOM05D000688 ORTHO05D005697 9.5e-21 103.2 78 65.4
MBI06_g17216_MAGBIO Magnolia biondii HOM05D000688 ORTHO05D005697 9.5e-21 103.2 72 69.4
Prupe.7G223000 Prunus persica HOM05D000688 ORTHO05D005697 9.5e-21 103.2 71 74.6
QL04p021054 Quercus lobata HOM05D000688 ORTHO05D005697 9.5e-21 103.2 79 64.6
MSTRG.23938 Avicennia marina HOM05D000688 ORTHO05D005697 1.2e-20 102.8 80 70.0
Carub.0001s2816 Capsella rubella HOM05D000688 ORTHO05D005697 1.2e-20 102.8 74 67.6
PSO384G4547 Papaver somniferum HOM05D000688 ORTHO05D005697 1.6e-20 102.4 79 68.4
Solyc01g086710.4 Solanum lycopersicum HOM05D000688 ORTHO05D005697 2.1e-20 102.1 77 70.1
Sopen01g033710 Solanum pennellii HOM05D000688 ORTHO05D005697 2.1e-20 102.1 77 70.1
PSO339G3101 Papaver somniferum HOM05D000688 ORTHO05D005697 6.2e-20 100.5 76 68.4
SalBow5G0935 Salvia bowleyana HOM05D000688 ORTHO05D005697 6.2e-20 100.5 79 69.6
Hma1.2p1_1796F.1_g302740 Hydrangea macrophylla HOM05D000688 ORTHO05D005697 8.0e-20 100.1 75 68.0
Hma1.2p1_1796F.1_g302760 Hydrangea macrophylla HOM05D000688 ORTHO05D005697 8.0e-20 100.1 75 68.0
Thhalv10006599m.g Eutrema salsugineum HOM05D000688 ORTHO05D005697 1.1e-19 99.8 73 67.1
Prupe.7G184700 Prunus persica HOM05D000688 ORTHO05D005697 1.1e-19 99.8 71 73.2
Peaxi162Scf00058g00317 Petunia axillaris HOM05D000688 ORTHO05D005697 1.4e-19 99.4 76 67.1
HanXRQChr04g0119011 Helianthus annuus HOM05D000688 ORTHO05D005697 3.1e-19 98.2 74 63.5
CARHR029500 Cardamine hirsuta HOM05D000688 ORTHO05D005697 4.0e-19 97.8 74 63.5
Thhalv10006600m.g Eutrema salsugineum HOM05D000688 ORTHO05D005697 4.0e-19 97.8 74 63.5
Prupe.7G107000 Prunus persica HOM05D000688 ORTHO05D005697 8.9e-19 96.7 71 71.8
Cfa010946 Carpinus fangiana HOM05D000688 ORTHO05D005697 9.8e-18 93.2 80 62.5
CDE04G0978 Ceratophyllum demersum HOM05D000688 ORTHO05D005697 1.7e-17 92.4 75 62.7
HPP92_008588 Vanilla planifolia HOM05D000688 ORTHO05D005697 1.7e-17 92.4 81 58.0
BcaC06g35472 Brassica carinata HOM05D000688 ORTHO05D005697 2.2e-17 92.0 75 62.7
Migut.B01339 Erythranthe guttata HOM05D000688 ORTHO05D005697 1.4e-16 89.4 77 62.3
SHI03904 Sapria himalayana HOM05D000688 ORTHO05D005697 1.4e-16 89.4 78 56.4
Zm00001eb044710 Zea mays HOM05D000688 ORTHO05D005697 2.4e-16 88.6 74 59.5
RcHm_v2.0_Chr1g0339571 Rosa chinensis HOM05D000688 ORTHO05D005697 4.1e-16 87.8 64 64.1
Haze_03000 Corylus avellana HOM05D000688 ORTHO05D005697 5.4e-16 87.4 76 59.2
unitig_8.g3855 Utricularia gibba HOM05D000688 ORTHO05D005697 3.5e-15 84.7 75 61.3
SEGI_04274 Sequoiadendron giganteum HOM05D000688 ORTHO05D005697 4.3e-13 77.8 75 54.7
GSVIVG01036642001 Vitis vinifera HOM05D000688 ORTHO05D005697 1.1e-11 73.2 77 55.8
ATR0138G022 Amborella trichopoda HOM05D000688 ORTHO05D005697 5.2e-11 70.9 81 46.9
Oeu030631.3 Olea europaea HOM05D000688 ORTHO05D005697 6.8e-11 70.5 77 55.8
Pp3c5_14880 Physcomitrium patens HOM05D000688 ORTHO05D005697 2.0e-10 68.9 70 52.9
Mapoly0004s0090 Marchantia polymorpha HOM05D000688 ORTHO05D005697 1.3e-09 66.2 72 50.0
SMO142G0003 Selaginella moellendorffii HOM05D000688 ORTHO05D005697 2.9e-09 65.1 72 44.4
SMO358G0395 Selaginella moellendorffii HOM05D000688 ORTHO05D005697 2.9e-09 65.1 72 44.4
CBR_g38732 Chara braunii HOM05D000688 ORTHO05D005697 1.2e-07 59.7 42 61.9
Mapoly4004s0001 Marchantia polymorpha HOM05D000688 ORTHO05D005697 1.2e-07 59.7 71 46.5
MCO01G228 Micromonas commoda HOM05D000688 ORTHO05D005697 1.2e-07 59.7 44 56.8
MCO01G532 Micromonas commoda HOM05D000688 ORTHO05D005697 1.2e-07 59.7 44 56.8


User provided reference genes

Program Settings