Gene: Sopen01g033710
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen01g033710
- Transcript Identifier Sopen01g033710.1
- Gene Type Coding gene
- Location Spenn-ch01 : 91415687-91431152 : positive
Gene Family Information
- ID HOM05D000688
- #Genes/#Species 832/100
- Phylogenetic origin
- ID ORTHO05D005697
- #Genes/#Species 153/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen01g033710.1
Descriptions
- Description Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A). | nuclear RNA polymerase A2 (NRPA2) | FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding | INVOLVED IN: transcription | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 , RNA polymerase Rpb2, domain 7 , RNA polymerase, beta subunit, protrusion , RNA polymerase I, Rpa2 specific , DNA-directed RNA polymerase, subunit 2 , RNA polymerase Rpb2, domain 3 , RNA polymerase Rpb2, domain 2 , RNA polymerase, beta subunit, conserved site | BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0009561 | ISO | PLAZA Integrative Orthology | megagametogenesis | AT1G29940 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0032549 | IEA | InterPro | ribonucleoside binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G29940 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR014724 | RNA polymerase Rpb2, OB-fold |
| IPR037033 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily |
| IPR009674 | DNA-directed RNA polymerase I subunit RPA2, domain 4 |
| IPR007641 | RNA polymerase Rpb2, domain 7 |
| IPR015712 | DNA-directed RNA polymerase, subunit 2 |
| IPR007642 | RNA polymerase Rpb2, domain 2 |
| IPR037034 | RNA polymerase Rpb2, domain 2 superfamily |
| IPR007120 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain |
| IPR007645 | RNA polymerase Rpb2, domain 3 |
| IPR007644 | RNA polymerase, beta subunit, protrusion |
| Mapman id | Description |
|---|---|
| 15.1.1.2 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic components.subunit 2 |