Gene: Carub.0001s2816
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0001s2816
- Transcript Identifier Carub.0001s2816.1
- Gene Type Coding gene
- Location scaffold_1 : 10260010-10267332 : negative
Gene Family Information
- ID HOM05D000688
- #Genes/#Species 832/100
- Phylogenetic origin
- ID ORTHO05D005697
- #Genes/#Species 153/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Carub.0001s2816.v1.1
- pacid 39228010
- synonym Carubv10008127m.g
Descriptions
- Description K03002 - DNA-directed RNA polymerase I subunit RPA2 (RPA2, POLR1B)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0009561 | ISO | PLAZA Integrative Orthology | megagametogenesis | AT1G29940 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0032549 | IEA | InterPro | ribonucleoside binding | |
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G29940 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR015712 | DNA-directed RNA polymerase, subunit 2 |
| IPR007642 | RNA polymerase Rpb2, domain 2 |
| IPR007641 | RNA polymerase Rpb2, domain 7 |
| IPR007120 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain |
| IPR007645 | RNA polymerase Rpb2, domain 3 |
| IPR009674 | DNA-directed RNA polymerase I subunit RPA2, domain 4 |
| IPR037034 | RNA polymerase Rpb2, domain 2 superfamily |
| IPR007644 | RNA polymerase, beta subunit, protrusion |
| IPR014724 | RNA polymerase Rpb2, OB-fold |
| IPR037033 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily |
| Mapman id | Description |
|---|---|
| 15.1.1.2 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic components.subunit 2 |