Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1400900 Malus domestica HOM05D000070 ORTHO05D248642 2.8e-48 194.9 93 100.0
MD05G1251500 Malus domestica HOM05D000070 ORTHO05D006627 5.1e-26 120.9 78 78.2
Prupe.4G112300 Prunus persica HOM05D000070 ORTHO05D006627 1.6e-19 99.4 76 64.5
FvH4_3g12310 Fragaria vesca HOM05D000070 ORTHO05D006627 8.6e-18 93.6 79 57.0
FAN21G2030 Fragaria x ananassa HOM05D000070 ORTHO05D006627 1.1e-17 93.2 78 57.7
QL11p017850 Quercus lobata HOM05D000070 ORTHO05D006627 1.9e-17 92.4 67 64.2
RcHm_v2.0_Chr5g0020121 Rosa chinensis HOM05D000070 ORTHO05D006627 4.3e-17 91.3 79 57.0
Cfa006373 Carpinus fangiana HOM05D000070 ORTHO05D006627 7.3e-17 90.5 75 57.3
Haze_04406 Corylus avellana HOM05D000070 ORTHO05D006627 1.6e-16 89.4 75 56.0
Lj4g0001942 Lotus japonicus HOM05D000070 ORTHO05D006627 1.6e-16 89.4 72 61.1
CANSAT35G0895 Cannabis sativa HOM05D000070 ORTHO05D006627 1.8e-15 85.9 68 57.4
Aa31LG3G18070 Aethionema arabicum HOM05D000065 ORTHO05D006627 2.4e-15 85.5 71 50.7
PGR102G0872 Punica granatum HOM05D000070 ORTHO05D006627 3.1e-15 85.1 70 52.9
Lalb_Chr05g0219821 Lupinus albus HOM05D000070 ORTHO05D006627 4.0e-15 84.7 73 57.5
Psat7g132840 Pisum sativum HOM05D000070 ORTHO05D006627 6.8e-15 84.0 72 55.6
TWI09G1172 Tripterygium wilfordii HOM05D000070 ORTHO05D006627 8.9e-15 83.6 72 51.4
arahy.Tifrunner.gnm1.ann1.REAP7F Arachis hypogaea HOM05D000070 ORTHO05D006627 1.5e-14 82.8 72 54.2
CiPaw.02G023600 Carya illinoinensis HOM05D000070 ORTHO05D006627 1.5e-14 82.8 75 52.0
COL.COLO4_30925 Corchorus olitorius HOM05D000070 ORTHO05D006627 1.5e-14 82.8 67 53.7
Medtr4g083460 Medicago truncatula HOM05D000070 ORTHO05D006627 1.5e-14 82.8 68 57.4
Glyma.07G224000 Glycine max HOM05D000070 ORTHO05D006627 2.0e-14 82.4 68 57.4
Thecc.06G135300 Theobroma cacao HOM05D000070 ORTHO05D006627 2.6e-14 82.0 67 55.2
TAR626G1726 Trochodendron aralioides HOM05D000070 ORTHO05D006627 2.6e-14 82.0 85 50.6
GSVIVG01013614001 Vitis vinifera HOM05D000070 ORTHO05D006627 3.4e-14 81.6 81 46.9
arahy.Tifrunner.gnm1.ann1.UR3YMK Arachis hypogaea HOM05D000070 ORTHO05D006627 4.4e-14 81.3 72 52.8
C09p68530 Brassica napus HOM05D000070 ORTHO05D006627 4.4e-14 81.3 82 41.5
CARHR204530 Cardamine hirsuta HOM05D000070 ORTHO05D006627 4.4e-14 81.3 85 43.5
Phvul.002G100600 Phaseolus vulgaris HOM05D000070 ORTHO05D006627 4.4e-14 81.3 72 56.9
Gohir.D10G048401 Gossypium hirsutum HOM05D000070 ORTHO05D006627 7.6e-14 80.5 67 53.7
Gorai.011G051500 Gossypium raimondii HOM05D000070 ORTHO05D006627 7.6e-14 80.5 67 53.7
TPR.G9706 Trifolium pratense HOM05D000070 ORTHO05D006627 9.9e-14 80.1 72 52.8
BcaB08g37256 Brassica carinata HOM05D000070 ORTHO05D006627 1.3e-13 79.7 82 42.7
Ca_18785_v3 Cicer arietinum L. HOM05D000070 ORTHO05D006627 1.3e-13 79.7 68 58.8
Duzib192G0613 Durio zibethinus HOM05D000070 ORTHO05D006627 1.3e-13 79.7 67 53.7
BraA10t44876Z Brassica rapa HOM05D000070 ORTHO05D006627 2.2e-13 79.0 82 41.5
A10p28270 Brassica napus HOM05D000070 ORTHO05D006627 2.9e-13 78.6 71 46.5
BolC9t59597H Brassica oleracea HOM05D000070 ORTHO05D006627 2.9e-13 78.6 82 41.5
Nn7g37939 Nelumbo nucifera HOM05D000070 ORTHO05D006627 4.9e-13 77.8 80 52.5
PSO541G5972 Papaver somniferum HOM05D000070 ORTHO05D006627 4.9e-13 77.8 81 44.4
Cpa.g.sc138.31 Carica papaya HOM05D000070 ORTHO05D006627 6.4e-13 77.4 80 52.5
PSO675G1403 Papaver somniferum HOM05D000070 ORTHO05D006627 6.4e-13 77.4 81 44.4
AT5G08470 Arabidopsis thaliana HOM05D000070 ORTHO05D006627 8.4e-13 77.0 82 42.7
Thhalv10012497m.g Eutrema salsugineum HOM05D000070 ORTHO05D006627 8.4e-13 77.0 71 46.5
Eucgr.E02009 Eucalyptus grandis HOM05D000070 ORTHO05D006627 1.9e-12 75.9 65 50.8
Manes.11G051180 Manihot esculenta HOM05D000070 ORTHO05D006627 4.2e-12 74.7 68 51.5
Ciclev10014090m.g Citrus clementina HOM05D000070 ORTHO05D006627 5.4e-12 74.3 69 50.7
Sp6g34430 Schrenkiella parvula HOM05D000070 ORTHO05D006627 5.4e-12 74.3 71 46.5
Sed0014200 Sechium edule HOM05D000070 ORTHO05D006627 5.4e-12 74.3 69 46.4
Atru.chr10.621 Acer truncatum HOM05D000070 ORTHO05D006627 1.2e-11 73.2 68 48.5
ATR0763G153 Amborella trichopoda HOM05D000070 ORTHO05D006627 1.6e-11 72.8 85 43.5
Hma1.2p1_1220F.1_g268000 Hydrangea macrophylla HOM05D000070 ORTHO05D006627 2.7e-11 72.0 71 50.7
Lsat_1_v5_gn_1_6720 Lactuca sativa HOM05D000070 ORTHO05D006627 3.5e-11 71.6 69 47.8
Carub.0006s0739 Capsella rubella HOM05D000070 ORTHO05D006627 6.0e-11 70.9 63 50.8
DCAR_014363 Daucus carota HOM05D000070 ORTHO05D006627 6.0e-11 70.9 78 46.2
HanXRQChr02g0040551 Helianthus annuus HOM05D000070 ORTHO05D006627 6.0e-11 70.9 65 49.2
MBI01_g11418_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D006627 6.0e-11 70.9 69 50.7
Potri.001G174100 Populus trichocarpa HOM05D000070 ORTHO05D006627 7.8e-11 70.5 68 47.1
AUR62024782 Chenopodium quinoa HOM05D000070 ORTHO05D006627 1.7e-10 69.3 71 45.1
TPR.G22941 Trifolium pratense HOM05D000002 ORTHO05D000001 2.3e-10 68.9 55 56.4
Actinidia01326 Actinidia chinensis HOM05D000070 ORTHO05D006627 3.9e-10 68.2 71 50.7
AUR62032439 Chenopodium quinoa HOM05D000070 ORTHO05D006627 3.9e-10 68.2 67 44.8
Rhsim01G0112400 Rhododendron simsii HOM05D000070 ORTHO05D006627 3.9e-10 68.2 69 50.7
Hund09412 Selenicereus undatus HOM05D000070 ORTHO05D006627 6.6e-10 67.4 67 47.8
CsaV3_1G046740 Cucumis sativus L. HOM05D000070 ORTHO05D006627 1.1e-09 66.6 69 40.6
ECA247G0604 Erigeron canadensis HOM05D000070 ORTHO05D006627 1.1e-09 66.6 71 43.7
ClCG01G008970 Citrullus lanatus HOM05D000070 ORTHO05D006627 4.3e-09 64.7 69 40.6
Aqoxy1G01537 Aquilegia oxysepala HOM05D000070 ORTHO05D006627 2.8e-08 62.0 67 43.3
Migut.C01080 Erythranthe guttata HOM05D000070 ORTHO05D006627 3.6e-08 61.6 63 46.0
Solyc04g057960.4 Solanum lycopersicum HOM05D000070 ORTHO05D006627 3.6e-08 61.6 68 42.6
Sopen04g025820 Solanum pennellii HOM05D000070 ORTHO05D006627 3.6e-08 61.6 68 42.6
Cc10_g13650 Coffea canephora HOM05D000070 ORTHO05D006627 4.8e-08 61.2 86 41.9
Peaxi162Scf00066g00526 Petunia axillaris HOM05D000070 ORTHO05D006627 6.2e-08 60.8 68 42.6
CAN.G405.6 Capsicum annuum HOM05D000070 ORTHO05D006627 1.1e-07 60.1 63 46.0
Lj4A664T70 Lonicera japonica HOM05D000070 ORTHO05D006627 1.1e-07 60.1 85 36.5
vmacro20772 Vaccinium macrocarpon HOM05D000070 ORTHO05D006627 1.4e-07 59.7 85 41.2
FAN26G0150 Fragaria x ananassa HOM05D000049 ORTHO05D006627 1.8e-07 59.3 79 41.8


User provided reference genes

Program Settings