Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 1.1e-104 383.3 184 100.0
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 2.9e-102 375.2 184 97.3
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 3.0e-99 365.2 184 92.9
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 5.2e-99 364.4 184 92.4
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 5.2e-99 364.4 184 92.4
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.5e-98 362.8 184 91.8
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 4.4e-98 361.3 184 91.3
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 6.3e-97 357.5 181 91.7
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 2.7e-95 352.1 181 90.1
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 3.5e-95 351.7 181 89.5
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 7.8e-95 350.5 181 89.5
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 1.0e-94 350.1 181 89.5
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 2.9e-94 348.6 181 89.5
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 2.9e-94 348.6 181 89.0
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 1.1e-93 346.7 181 88.4
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 1.5e-93 346.3 181 87.8
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 1.9e-93 345.9 181 86.7
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 2.5e-93 345.5 181 86.2
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 4.3e-93 344.7 181 87.8
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 7.3e-93 344.0 181 87.3
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 7.3e-93 344.0 181 86.2
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 9.5e-93 343.6 181 86.7
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 2.1e-92 342.4 181 87.3
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 2.1e-92 342.4 181 86.7
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 2.1e-92 342.4 181 86.7
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 2.1e-92 342.4 181 86.7
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 2.1e-92 342.4 181 86.7
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 2.8e-92 342.0 181 87.3
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 3.6e-92 341.7 181 87.3
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 3.6e-92 341.7 181 85.1
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 4.7e-92 341.3 181 86.7
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 4.7e-92 341.3 181 86.2
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 4.7e-92 341.3 181 85.1
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 4.7e-92 341.3 181 86.7
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 8.0e-92 340.5 181 86.2
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 1.0e-91 340.1 181 85.6
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 1.0e-91 340.1 181 85.6
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.4e-91 339.7 181 86.7
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 1.4e-91 339.7 181 86.7
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 1.4e-91 339.7 181 86.2
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 1.4e-91 339.7 181 86.7
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 1.8e-91 339.3 181 86.2
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 1.8e-91 339.3 181 86.2
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 1.8e-91 339.3 181 84.0
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 1.8e-91 339.3 181 86.7
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 2.3e-91 339.0 181 86.2
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 2.3e-91 339.0 181 85.6
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 2.3e-91 339.0 181 85.6
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 3.1e-91 338.6 181 85.6
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 4.0e-91 338.2 181 84.5
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 4.0e-91 338.2 181 84.5
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 5.2e-91 337.8 181 85.6
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 5.2e-91 337.8 181 85.6
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 6.8e-91 337.4 181 84.5
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 8.9e-91 337.0 181 86.2
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 8.9e-91 337.0 181 85.1
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 8.9e-91 337.0 181 84.0
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 1.2e-90 336.7 181 86.2
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 1.2e-90 336.7 181 86.2
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 1.2e-90 336.7 182 83.5
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 1.2e-90 336.7 181 85.1
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 1.2e-90 336.7 179 85.5
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 1.5e-90 336.3 181 84.0
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 1.5e-90 336.3 181 84.0
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 2.0e-90 335.9 181 85.1
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 2.6e-90 335.5 181 84.5
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 2.6e-90 335.5 181 84.5
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 2.6e-90 335.5 179 85.5
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 3.4e-90 335.1 181 84.5
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 4.4e-90 334.7 181 84.0
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 5.8e-90 334.3 181 85.1
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 5.8e-90 334.3 181 84.0
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 1.3e-89 333.2 181 85.1
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 1.7e-89 332.8 181 83.4
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 3.7e-89 331.6 181 82.9
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 4.9e-89 331.3 181 85.1
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 8.3e-89 330.5 181 82.3
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 1.4e-88 329.7 181 81.8
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 3.2e-88 328.6 181 82.3
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 7.0e-88 327.4 176 84.7
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 1.2e-87 326.6 169 89.3
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 4.6e-87 324.7 181 82.9
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 6.0e-87 324.3 181 80.1
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 7.8e-87 323.9 181 81.8
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 7.8e-87 323.9 181 82.9
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 1.3e-86 323.2 181 83.4
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 2.3e-86 322.4 207 74.4
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 2.3e-86 322.4 181 82.3
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 3.0e-86 322.0 181 82.9
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 6.6e-86 320.9 181 82.9
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 1.5e-85 319.7 181 81.8
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 7.3e-85 317.4 181 79.6
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 6.2e-84 314.3 181 79.6
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 1.4e-83 313.2 181 80.7
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 1.4e-83 313.2 181 78.5
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 1.4e-83 313.2 181 77.9
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 2.3e-83 312.4 181 79.0
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 2.3e-83 312.4 169 82.8
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 2.3e-83 312.4 181 79.6
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 4.0e-83 311.6 181 79.0
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 5.2e-83 311.2 181 79.0
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 1.2e-82 310.1 181 77.9
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 1.2e-82 310.1 181 77.3
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 1.5e-82 309.7 182 78.6
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.5e-82 309.7 181 77.9
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 2.0e-82 309.3 175 80.0
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 2.2e-81 305.8 179 77.7
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 3.7e-81 305.1 179 76.5
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 8.3e-81 303.9 179 75.4
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 1.1e-80 303.5 179 75.4
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 2.4e-80 302.4 167 82.6
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 1.6e-79 299.7 181 74.6
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 3.5e-79 298.5 181 74.0
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 1.7e-73 279.6 150 86.0
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 3.2e-64 248.8 169 71.0
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 4.2e-64 248.4 177 63.3
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 1.1e-59 233.8 124 85.5
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 2.4e-59 232.6 179 60.9
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 1.5e-58 229.9 178 61.2
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 5.4e-56 221.5 135 74.8
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 7.1e-56 221.1 175 58.9
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 6.7e-46 188.0 117 78.6
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 3.7e-44 182.2 102 81.4
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.3e-33 147.1 76 85.5
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 1.7e-33 146.7 78 82.1
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 1.8e-22 110.2 57 89.5
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 1.5e-21 107.1 59 83.1
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 1.5e-21 107.1 59 83.1
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 1.2e-18 97.4 48 89.6
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 1.5e-18 97.1 53 83.0
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.4e-16 90.5 50 78.0
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 1.2e-15 87.4 50 76.0
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 2.3e-14 83.2 49 73.5
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 2.4e-11 73.2 48 62.5
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 4.5e-10 68.9 177 28.2
CBR_g21303 Chara braunii HOM05D001677 ORTHO05D000002 8.8e-06 54.7 173 28.3


User provided reference genes

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