Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 8.4e-108 393.7 194 100.0
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 2.8e-103 378.6 194 94.8
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 2.1e-98 362.5 194 88.7
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 2.7e-98 362.1 194 90.7
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 6.1e-98 360.9 194 88.7
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 7.9e-98 360.5 194 88.7
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.3e-97 359.8 194 88.1
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.8e-97 359.4 194 87.6
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 1.8e-97 359.4 194 89.2
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 3.9e-97 358.2 194 88.1
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 6.7e-97 357.5 194 90.2
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 8.7e-97 357.1 194 88.1
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 1.1e-96 356.7 193 88.1
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 5.7e-96 354.4 194 87.6
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 7.4e-96 354.0 194 87.6
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 7.4e-96 354.0 194 88.1
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 1.3e-95 353.2 194 87.6
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.6e-95 352.8 194 86.1
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 2.2e-95 352.4 194 87.1
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 2.8e-95 352.1 194 87.1
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 2.8e-95 352.1 194 86.6
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 3.7e-95 351.7 194 87.1
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 8.2e-95 350.5 194 86.1
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 8.2e-95 350.5 194 86.1
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 8.2e-95 350.5 194 86.1
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 8.2e-95 350.5 194 86.1
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 1.4e-94 349.7 194 85.6
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 1.4e-94 349.7 194 86.1
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 1.8e-94 349.4 194 86.6
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 3.1e-94 348.6 194 85.6
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 3.1e-94 348.6 194 85.1
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 3.1e-94 348.6 194 86.1
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 4.1e-94 348.2 194 85.1
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 6.9e-94 347.4 194 86.6
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 6.9e-94 347.4 194 86.1
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 6.9e-94 347.4 194 85.1
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 9.0e-94 347.1 194 85.1
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 9.0e-94 347.1 194 86.1
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 1.5e-93 346.3 194 86.1
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 1.5e-93 346.3 194 84.0
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 1.5e-93 346.3 194 85.6
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 2.6e-93 345.5 194 84.5
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 3.4e-93 345.1 194 85.6
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 3.4e-93 345.1 194 86.1
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 4.5e-93 344.7 194 85.1
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 4.5e-93 344.7 194 85.1
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 4.5e-93 344.7 194 85.1
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 84.5
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 85.6
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 7.7e-93 344.0 194 86.6
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 1.0e-92 343.6 194 84.0
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 1.3e-92 343.2 194 84.0
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 1.3e-92 343.2 194 84.5
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.3e-92 343.2 194 84.0
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 1.3e-92 343.2 195 85.1
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 1.3e-92 343.2 194 84.0
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 2.2e-92 342.4 194 83.5
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 2.2e-92 342.4 194 84.0
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 2.2e-92 342.4 194 84.0
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 2.9e-92 342.0 194 84.0
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 3.8e-92 341.7 194 83.5
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 3.8e-92 341.7 210 82.4
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 5.0e-92 341.3 194 84.0
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 5.0e-92 341.3 194 85.1
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 5.0e-92 341.3 194 84.0
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 6.5e-92 340.9 194 84.0
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 1.1e-91 340.1 194 84.0
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 1.9e-91 339.3 194 83.0
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 2.5e-91 339.0 200 82.5
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 4.2e-91 338.2 214 79.0
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 1.2e-90 336.7 194 83.5
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 1.6e-90 336.3 194 82.5
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 7.9e-90 334.0 187 84.5
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 1.4e-89 333.2 194 82.5
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 3.0e-89 332.0 214 77.6
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 5.1e-89 331.3 235 71.9
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 6.7e-89 330.9 214 77.1
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 2.5e-88 328.9 194 81.4
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 5.7e-88 327.8 225 73.8
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 9.7e-88 327.0 194 79.4
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 8.2e-87 323.9 194 77.3
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.8e-86 322.8 194 78.4
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 5.3e-86 321.2 210 74.3
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 1.2e-85 320.1 194 78.4
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 5.9e-85 317.8 188 80.3
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 7.7e-85 317.4 194 79.9
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 1.0e-84 317.0 177 84.7
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 1.0e-84 317.0 193 79.8
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 1.7e-84 316.2 194 76.8
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 2.9e-84 315.5 178 82.6
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 3.8e-84 315.1 174 86.8
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 6.5e-84 314.3 194 79.9
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 8.5e-84 313.9 187 77.5
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 1.6e-82 309.7 161 90.7
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 6.1e-82 307.8 297 56.9
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 3.0e-81 305.4 194 73.7
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 3.9e-81 305.1 194 72.7
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 2.6e-80 302.4 194 72.2
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 2.2e-79 299.3 194 71.6
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 8.2e-79 297.4 194 75.3
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 9.1e-78 293.9 274 59.1
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 1.6e-77 293.1 195 69.7
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 1.3e-76 290.0 162 85.2
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 2.9e-76 288.9 160 85.6
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 5.2e-73 278.1 283 55.8
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 1.6e-69 266.5 172 70.9
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 6.5e-60 234.6 120 91.7
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 1.5e-59 233.4 120 90.8
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.6e-58 229.9 120 90.0
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 3.7e-55 218.8 134 77.6
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 2.4e-54 216.1 178 57.3
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.6e-53 213.4 121 81.0
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.8e-49 199.9 123 77.2
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 2.3e-49 199.5 123 76.4
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 5.2e-49 198.4 191 50.8
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 2.4e-46 189.5 114 79.8
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 3.5e-45 185.7 114 79.8
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 2.1e-42 176.4 99 82.8
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 4.7e-42 175.3 122 67.2
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 6.2e-42 174.9 112 74.1
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 4.0e-41 172.2 93 86.0
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 2.0e-40 169.9 173 50.3
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 3.9e-36 155.6 186 42.5
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 8.6e-36 154.5 92 80.4
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 7.5e-32 141.4 76 82.9
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 9.8e-32 141.0 88 78.4
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 9.8e-32 141.0 88 78.4
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 2.2e-31 139.8 71 87.3
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 2.9e-31 139.4 73 84.9
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 1.1e-30 137.5 73 86.3
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 1.1e-30 137.5 73 86.3
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 1.1e-30 137.5 73 86.3
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 8.6e-28 127.9 64 89.1
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 7.8e-21 104.8 74 73.0
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 3.3e-19 99.4 59 81.4
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 9.9e-16 87.8 55 78.2
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.7e-15 87.0 88 55.7
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 5.4e-14 82.0 83 54.2
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 5.4e-14 82.0 83 54.2
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 6.0e-13 78.6 40 92.5
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 2.1e-10 70.1 90 46.7
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 3.6e-10 69.3 56 60.7


User provided reference genes

Program Settings