Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 0.0e+00 1149.8 565 100.0
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 0.0e+00 1124.0 567 97.5
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 0.0e+00 1110.1 565 95.8
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1106.7 568 95.4
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 0.0e+00 1106.3 568 95.6
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1103.6 566 95.4
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1103.6 566 95.4
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1102.4 565 95.0
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 0.0e+00 1102.0 563 95.2
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 0.0e+00 1102.0 566 95.2
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 0.0e+00 1101.3 564 95.4
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1101.3 566 95.1
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 0.0e+00 1100.9 563 95.2
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 0.0e+00 1099.3 563 95.4
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1099.3 565 94.9
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 0.0e+00 1098.2 563 95.0
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 0.0e+00 1096.6 565 94.3
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1096.6 563 95.0
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 0.0e+00 1096.6 562 95.2
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 0.0e+00 1096.3 565 94.2
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 0.0e+00 1094.7 562 95.0
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 0.0e+00 1094.0 565 94.7
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 0.0e+00 1094.0 563 94.1
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 0.0e+00 1093.6 563 94.8
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1093.6 566 94.3
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1093.2 563 94.5
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 0.0e+00 1092.0 565 94.0
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 0.0e+00 1090.1 555 95.5
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 0.0e+00 1089.7 565 93.6
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 0.0e+00 1088.6 565 93.6
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1088.2 561 94.3
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 0.0e+00 1088.2 556 95.1
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 0.0e+00 1087.4 565 94.2
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 0.0e+00 1087.0 564 93.8
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1087.0 563 94.0
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 0.0e+00 1086.6 566 93.6
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 0.0e+00 1085.9 554 95.1
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 0.0e+00 1085.5 597 89.9
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 0.0e+00 1085.5 559 94.8
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 0.0e+00 1084.7 562 93.4
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1083.9 563 94.0
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 0.0e+00 1083.2 566 92.6
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 0.0e+00 1082.8 586 91.3
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 0.0e+00 1082.4 566 92.6
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 0.0e+00 1082.4 566 92.6
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 0.0e+00 1082.0 564 92.7
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 0.0e+00 1082.0 567 92.2
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 0.0e+00 1081.6 565 92.7
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 0.0e+00 1081.2 565 92.7
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 0.0e+00 1080.9 566 92.4
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 0.0e+00 1080.9 562 93.2
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 0.0e+00 1080.5 566 92.2
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1080.5 563 93.1
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1080.5 563 93.3
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 0.0e+00 1080.1 562 92.7
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 0.0e+00 1079.7 567 92.2
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 0.0e+00 1079.7 565 93.6
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1078.5 564 92.7
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 0.0e+00 1077.0 566 91.9
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 0.0e+00 1077.0 566 91.9
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 0.0e+00 1076.6 599 89.1
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 0.0e+00 1076.2 564 92.4
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 0.0e+00 1075.8 564 92.4
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 0.0e+00 1075.5 566 92.8
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 0.0e+00 1075.5 565 92.7
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 3.9e-312 1074.7 565 92.6
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 3.9e-312 1074.7 564 92.2
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 3.9e-312 1074.7 566 92.6
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 3.9e-312 1074.7 563 92.7
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 7.7e-312 1073.2 562 92.5
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 7.7e-312 1073.2 565 92.6
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 7.7e-312 1072.8 565 92.2
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 4.6e-311 1070.5 564 92.0
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 7.7e-311 1069.7 555 93.2
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 1.7e-310 1068.5 564 91.8
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 3.2e-309 1064.3 565 92.0
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 3.6e-308 1060.8 557 90.8
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 1.0e-307 1059.3 566 91.0
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 1.0e-307 1059.3 554 93.1
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 3.0e-307 1057.7 618 85.6
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 4.0e-307 1057.4 571 90.9
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 9.7e-306 1052.7 556 91.0
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 2.2e-305 1051.6 565 90.6
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 3.1e-304 1047.7 595 87.2
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 1.3e-302 1042.3 565 90.6
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 8.5e-302 1039.6 565 89.9
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 4.7e-300 1033.9 523 95.4
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 4.0e-299 1030.8 553 88.6
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 9.8e-298 1026.2 575 88.5
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 2.4e-296 1021.5 554 88.4
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.9e-293 1011.9 554 87.0
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.9e-293 1011.9 554 87.0
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 2.1e-292 1008.4 564 88.5
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 4.7e-292 1007.3 542 88.2
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 1.8e-288 995.3 523 92.0
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 1.9e-277 958.7 489 93.9
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 3.1e-275 951.4 489 94.1
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 7.3e-269 930.2 566 82.7
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 2.9e-265 918.3 456 96.1
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 3.5e-263 911.4 540 80.6
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 1.1e-251 873.2 544 78.5
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.1e-237 826.6 565 75.2
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 5.3e-235 817.8 408 96.1
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 4.5e-234 814.7 528 79.9
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 2.9e-233 812.0 416 95.7
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.4e-232 808.9 567 74.8
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 7.4e-229 797.3 523 78.2
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.8e-227 792.7 523 77.8
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 3.9e-222 775.0 565 71.7
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.1e-221 773.5 503 75.1
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 8.2e-220 767.3 564 71.3
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 6.5e-217 757.7 565 71.3
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 5.1e-214 748.0 390 93.6
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.0e-209 733.8 566 67.0
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 5.9e-194 681.4 502 70.7
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 5.2e-190 668.3 331 95.8
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 2.0e-170 603.2 312 90.7
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 5.8e-157 558.5 502 61.0
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.0e-149 533.5 556 56.1
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.3e-145 520.8 262 93.9
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.0e-137 494.6 462 57.8
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.0e-133 480.3 301 81.1
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 9.3e-131 471.5 567 51.0
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 9.3e-131 471.5 258 89.9
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 1.3e-129 467.6 385 66.2
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 6.6e-129 465.3 293 79.9
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 3.3e-128 463.0 504 53.0
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.6e-122 442.6 499 50.1
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 7.9e-122 441.8 565 47.8
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 9.9e-117 424.9 237 89.5
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 6.0e-114 415.6 350 62.6
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 3.1e-110 403.3 196 96.9
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 5.3e-102 375.9 300 69.3
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 5.0e-100 369.4 246 77.2
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.5e-96 357.8 267 68.2
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 7.4e-96 355.5 321 63.9
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 9.1e-94 348.6 214 78.0
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 6.5e-92 342.4 183 87.4
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.1e-91 341.7 167 97.0
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 2.6e-85 320.5 154 96.8
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 3.8e-84 316.6 160 91.9
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 2.7e-82 310.5 158 93.7
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 1.3e-71 275.0 177 81.9
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 2.0e-69 267.7 159 83.6
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 5.2e-65 253.1 159 79.9
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 5.4e-54 216.5 123 88.6
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 8.0e-50 202.6 105 93.3
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 5.2e-49 199.9 126 78.6
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-46 192.2 113 86.7
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.7e-44 184.9 134 70.1
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 5.0e-44 183.3 276 43.1
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 8.1e-34 149.4 96 80.2
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 6.8e-33 146.4 147 59.9
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 1.0e-28 132.5 75 89.3
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 2.1e-26 124.8 86 77.9
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 4.7e-26 123.6 73 84.9
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 2.4e-22 111.3 55 98.2
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 1.9e-19 101.7 58 86.2
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 5.6e-19 100.1 60 91.7
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 8.1e-18 96.3 60 88.3
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 1.4e-17 95.5 49 95.9
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 9.0e-17 92.8 63 73.0
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-16 92.0 47 91.5
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 9.9e-16 89.4 53 83.0
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 2.2e-15 88.2 44 88.6
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.9e-14 85.1 88 59.1
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 1.9e-14 85.1 59 71.2
MD06G1156600 Malus domestica HOM05D004180 ORTHO05D020683 4.6e-13 80.5 51 88.2


User provided reference genes

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